Cmc10g0279321 (gene) Melon (Charmono) v1.1

Overview
NameCmc10g0279321
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
LocationCMiso1.1chr10: 16427030 .. 16428567 (+)
RNA-Seq ExpressionCmc10g0279321
SyntenyCmc10g0279321
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAAAGCGAGACTAGTAGCTCAAGGATATTCTTGAATTGAAGGTCTTGGCTATGAGGAAACCTTTAGCCTTGCTGTTAAACCAACAACAATTTGATTAGTACTTGCTCTTGCTGCTTCTTTCAACTGGCCCTGAAACAAATGTATGTCAAAAACGCCTTCCTCCACGGTTATCTCAAAGAGTGTACATGGCTCAACCTCCAGGTTTCACTTGCCTTGCTCATCTTAATTGTGTCTATTTATTGAAACGATCACTTTATGGCTTAAAACAAGCACCTAGAGCTTGGTTCGATAGATTGTCCACTTTCCTTACTCACATAGGTTTTACATGTACCATCTTCGACCCATCTCTCTTCCTTTCCAAAAATTCTAGTACCTTAGTTCTTATGCTTTTTTACATTAATAATATTATCCTCACCGCGCAATGACACAACCTTTATTGCCACCTTAGTAACCAAGTCAGGTCAAGAATTTGCTTTAAAAGATTTTGGGATCCTTCACTACTTCTTAGAAGTTGAACTAAAGCATAAACCCCATGGTTTTCACATCACTCAAACTAAGTATACACGGTAGATATTCTATAAGGCTAACTAAATGTTTCTCCAATATCTACTCCAACAGCAACAAGCAAGAACAAATGCCCAAGAGATGATGAACTAGTCAATCCTACCACTTATAGAGGCCTTGTTGGGTCCATCCAATACCTCACCTTAACAAGACCTGACATCGCCTTTGCCATCAACAAAGCTTGTAAAAAATGCAACCACCCACATTGCAGCACTTCAGGGAAGTTAAACGCATTCTAAGCATGCTTTGCATCATGGCATCACTTTTCTTAAAAATAAATTGCCTTAAGCTCTATGCTTTTAGTGATGCAGATTAGTTGGTTGTCCAAACACAAGGAGGAGCATCTCGGGCATTTGTGTGTATCTTGGATCCAACCTCATCTCATGGGTTTCCAAGAAGCAACCAACTGTCTCTAGATCCAGCGTTGAGGTAGAATATCTCGCTATGGCGAACGCAACCGCAGAACTCACTTGGATCACATTCCTGCTATCTGACGTTGAAATCTCATTACTTAAAGCTCCTGAACTTTTCAGCGATAATATGAGTGCTCTCCAAATGTCCATCAACCCTGTGTAGTCCCTCATATTTCAGTGATAATATGAGTTCTTTTATTTATTAGAAACATGCCAGAAATTGTATAGAAGAAAAGTTTCAAAAACTGCCTATGTCACGAGCAGAGGGGTTTTGAAACCCTCAATCTAACAAGTGAAAGTGAAAACAGTAGCAATACCACATGAAAGATAAAACATCACATTGTAGGCAGATTCATATACCTCTTACTATGATGAATGGACGCCATCTAAAATCATGGTGGGGAGAGGAACAAAAGAGTATTATTTTTCAAGTTATAGTGTGATTCATGAGGATTTCAAGGCTCAATAAGTTCTTATAAACGTGCGTCAGAAGTAAGCTTTAACGTTAAAAGTTTGAGCTTCACACATAAGTTTCAGAAGCCTTTTAAACAAGAAAACAGT

mRNA sequence

TAAAGCGAGACTAGTAGCTCAAGGATATTCTTGAATTGAAGGTCTTGGCTATGAGGAAACCTTTAGCCTTGCTGTTAAACCAACAACAATTTGATTAGTACTTGCTCTTGCTGCTTCTTTCAACTGGCCCTGAAACAAATGTATGTCAAAAACGCCTTCCTCCACGGTTATCTCAAAGAGTGTACATGGCTCAACCTCCAGCAACAAGCAAGAACAAATGCCCAAGAGATGATGAACTAGTCAATCCTACCACTTATAGAGGCCTTGTTGGGTCCATCCAATACCTCACCTTAACAAGACCTGACATCGCCTTTGCCATCAACAAAGCTTGTAAAAAATGCAACCACCCACATTGCAGCACTTCAGGGAAGTTAAACGCATTCTAAGCATGCTTTGCATCATGGCATCACTTTTCTTAAAAATAAATTGCCTTAAGCTCTATGCTTTTAGTGATGCAGATTAGTTGGTTGTCCAAACACAAGGAGGAGCATCTCGGGCATTTGTGTGTATCTTGGATCCAACCTCATCTCATGGGTTTCCAAGAAGCAACCAACTGTCTCTAGATCCAGCGTTGAGGTAGAATATCTCGCTATGGCGAACGCAACCGCAGAACTCACTTGGATCACATTCCTGCTATCTGACGTTGAAATCTCATTACTTAAAGCTCCTGAACTTTTCAGCGATAATATGAGTGCTCTCCAAATGTCCATCAACCCTGTGTAGTCCCTCATATTTCAGTGATAATATGAGTTCTTTTATTTATTAGAAACATGCCAGAAATTGTATAGAAGAAAAGTTTCAAAAACTGCCTATGTCACGAGCAGAGGGGTTTTGAAACCCTCAATCTAACAAGTGAAAGTGAAAACAGTAGCAATACCACATGAAAGATAAAACATCACATTGTAGGCAGATTCATATACCTCTTACTATGATGAATGGACGCCATCTAAAATCATGGTGGGGAGAGGAACAAAAGAGTATTATTTTTCAAGTTATAGTGTGATTCATGAGGATTTCAAGGCTCAATAAGTTCTTATAAACGTGCGTCAGAAGTAAGCTTTAACGTTAAAAGTTTGAGCTTCACACATAAGTTTCAGAAGCCTTTTAAACAAGAAAACAGT

Coding sequence (CDS)

ATGGCTCAACCTCCAGCAACAAGCAAGAACAAATGCCCAAGAGATGATGAACTAGTCAATCCTACCACTTATAGAGGCCTTGTTGGGTCCATCCAATACCTCACCTTAACAAGACCTGACATCGCCTTTGCCATCAACAAAGCTTGTAAAAAATGCAACCACCCACATTGCAGCACTTCAGGGAAGTTAAACGCATTCTAA

Protein sequence

MAQPPATSKNKCPRDDELVNPTTYRGLVGSIQYLTLTRPDIAFAINKACKKCNHPHCSTSGKLNAF
Homology
[Close]
BLAST of Cmc10g0279321 vs. NCBI nr
Match: XP_022157372.1 (uncharacterized protein LOC111024092 [Momordica charantia] >XP_022157373.1 uncharacterized protein LOC111024092 [Momordica charantia] >XP_022157374.1 uncharacterized protein LOC111024092 [Momordica charantia] >XP_022157375.1 uncharacterized protein LOC111024092 [Momordica charantia] >XP_022157377.1 uncharacterized protein LOC111024092 [Momordica charantia] >XP_022157378.1 uncharacterized protein LOC111024092 [Momordica charantia] >XP_022157379.1 uncharacterized protein LOC111024092 [Momordica charantia] >XP_022157380.1 uncharacterized protein LOC111024092 [Momordica charantia] >XP_022157381.1 uncharacterized protein LOC111024092 [Momordica charantia] >XP_022157382.1 uncharacterized protein LOC111024092 [Momordica charantia])

HSP 1 Score: 82.4 bits (202), Expect = 1.6e-12
Identity = 36/55 (65.45%), Postives = 44/55 (80.00%), Query Frame = 0 

Query: 1   MAQPPATSKNKCPRDDELVNPTTYRGLVGSIQYLTLTRPDIAFAINKACKKCNHP 56
           ++ P ATSKNKCP ++ELV+PT YR LVGS+QYLTLTRPDI F +NKAC+    P
Sbjct: 140 ISTPMATSKNKCPHENELVDPTAYRSLVGSLQYLTLTRPDIHFYVNKACQHMQQP 194

[Close]
BLAST of Cmc10g0279321 vs. NCBI nr
Match: XP_022139305.1 (uncharacterized protein LOC111010253 isoform X1 [Momordica charantia])

HSP 1 Score: 68.6 bits (166), Expect = 2.4e-08
Identity = 29/55 (52.73%), Postives = 41/55 (74.55%), Query Frame = 0 

Query: 1   MAQPPATSKNKCPRDDELVNPTTYRGLVGSIQYLTLTRPDIAFAINKACKKCNHP 56
           ++ P +TS +    D+E+++ T YR LVGS+QYLTLTRPDI FA+NKAC+  + P
Sbjct: 75  LSTPMSTSTSSSSNDNEIIDATQYRSLVGSLQYLTLTRPDITFAVNKACQHLHDP 129

[Close]
BLAST of Cmc10g0279321 vs. NCBI nr
Match: XP_019189700.1 (PREDICTED: uncharacterized protein LOC109184109 [Ipomoea nil])

HSP 1 Score: 64.3 bits (155), Expect = 4.5e-07
Identity = 26/55 (47.27%), Postives = 40/55 (72.73%), Query Frame = 0 

Query: 1  MAQPPATSKNKCPRDDELVNPTTYRGLVGSIQYLTLTRPDIAFAINKACKKCNHP 56
          +A P A +++  P  DE  NPT YR LVG++QYLT+TRPD+++A+N+ C+  + P
Sbjct: 7  LATPAAVTQSATPSTDEFENPTQYRRLVGALQYLTITRPDLSYAVNRLCQFMHMP 61

[Close]
BLAST of Cmc10g0279321 vs. NCBI nr
Match: XP_019156986.1 (PREDICTED: uncharacterized protein LOC109153587 [Ipomoea nil])

HSP 1 Score: 64.3 bits (155), Expect = 4.5e-07
Identity = 26/55 (47.27%), Postives = 40/55 (72.73%), Query Frame = 0 

Query: 1   MAQPPATSKNKCPRDDELVNPTTYRGLVGSIQYLTLTRPDIAFAINKACKKCNHP 56
           +A P A SK + P DD   NPT Y+ +VG++QYLT+TRPD+++A+N+ C+  + P
Sbjct: 155 LATPAAVSKAETPSDDPYDNPTQYQRIVGALQYLTITRPDLSYAVNRLCQFMHSP 209

[Close]
BLAST of Cmc10g0279321 vs. NCBI nr
Match: XP_022141787.1 (uncharacterized protein LOC111012071 [Momordica charantia])

HSP 1 Score: 64.3 bits (155), Expect = 4.5e-07
Identity = 27/45 (60.00%), Postives = 34/45 (75.56%), Query Frame = 0 

Query: 6   ATSKNKCPRDDELVNPTTYRGLVGSIQYLTLTRPDIAFAINKACK 51
           A S    P D +LV+ TTYR +VGS+QYLTLTRPDI +A+NK C+
Sbjct: 145 ALSSTSSPNDGDLVDATTYRSIVGSLQYLTLTRPDIVYAVNKVCQ 189

[Close]
BLAST of Cmc10g0279321 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 5.1e-06
Identity = 21/55 (38.18%), Postives = 35/55 (63.64%), Query Frame = 0 

Query: 1   MAQPPATSKNKCPRDDELVNPTTYRGLVGSIQYLTLTRPDIAFAINKACKKCNHP 56
           M+ P     N      +  +P+ +R +VG++QYLTLTRPDI++A+N  C++ + P
Sbjct: 77  MSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEP 131

[Close]
BLAST of Cmc10g0279321 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 5.1e-06
Identity = 25/56 (44.64%), Postives = 37/56 (66.07%), Query Frame = 0 

Query: 1    MAQPPATS-KNKCPRDDELVNPTTYRGLVGSIQYLTLTRPDIAFAINKACKKCNHP 56
            +A P ATS K       +L +PT YRG+VGS+QYL  TRPD+++A+N+  +  + P
Sbjct: 1204 VATPMATSPKLTLHSGTKLPDPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMP 1259

[Close]
BLAST of Cmc10g0279321 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 8.8e-06
Identity = 20/39 (51.28%), Postives = 30/39 (76.92%), Query Frame = 0 

Query: 17   ELVNPTTYRGLVGSIQYLTLTRPDIAFAINKACKKCNHP 56
            +L +PT YRG+VGS+QYL  TRPDI++A+N+  +  + P
Sbjct: 1238 KLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMP 1276

[Close]
BLAST of Cmc10g0279321 vs. ExPASy TrEMBL
Match: A0A6J1DUB4 (uncharacterized protein LOC111024092 OS=Momordica charantia OX=3673 GN=LOC111024092 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 7.7e-13
Identity = 36/55 (65.45%), Postives = 44/55 (80.00%), Query Frame = 0 

Query: 1   MAQPPATSKNKCPRDDELVNPTTYRGLVGSIQYLTLTRPDIAFAINKACKKCNHP 56
           ++ P ATSKNKCP ++ELV+PT YR LVGS+QYLTLTRPDI F +NKAC+    P
Sbjct: 140 ISTPMATSKNKCPHENELVDPTAYRSLVGSLQYLTLTRPDIHFYVNKACQHMQQP 194

[Close]
BLAST of Cmc10g0279321 vs. ExPASy TrEMBL
Match: A0A6J1CBZ1 (uncharacterized protein LOC111010253 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111010253 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.1e-08
Identity = 29/55 (52.73%), Postives = 41/55 (74.55%), Query Frame = 0 

Query: 1   MAQPPATSKNKCPRDDELVNPTTYRGLVGSIQYLTLTRPDIAFAINKACKKCNHP 56
           ++ P +TS +    D+E+++ T YR LVGS+QYLTLTRPDI FA+NKAC+  + P
Sbjct: 75  LSTPMSTSTSSSSNDNEIIDATQYRSLVGSLQYLTLTRPDITFAVNKACQHLHDP 129

[Close]
BLAST of Cmc10g0279321 vs. ExPASy TrEMBL
Match: A0A6J1CKU6 (uncharacterized protein LOC111012071 OS=Momordica charantia OX=3673 GN=LOC111012071 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.2e-07
Identity = 27/45 (60.00%), Postives = 34/45 (75.56%), Query Frame = 0 

Query: 6   ATSKNKCPRDDELVNPTTYRGLVGSIQYLTLTRPDIAFAINKACK 51
           A S    P D +LV+ TTYR +VGS+QYLTLTRPDI +A+NK C+
Sbjct: 145 ALSSTSSPNDGDLVDATTYRSIVGSLQYLTLTRPDIVYAVNKVCQ 189

[Close]
BLAST of Cmc10g0279321 vs. ExPASy TrEMBL
Match: A0A7T0BR62 (Uncharacterized protein OS=Dendrobium nobile OX=94219 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.8e-07
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 0 

Query: 5  PATSKNKCPRD-DELVNPTTYRGLVGSIQYLTLTRPDIAFAINKACKKCNHP 56
          P + K  C  D  E  NPT YR LVG++QYLTLTRPDI +A+NKAC+  + P
Sbjct: 48 PTSVKAVCSSDSSEFTNPTLYRQLVGALQYLTLTRPDITYAVNKACQHMHKP 99

[Close]
BLAST of Cmc10g0279321 vs. ExPASy TrEMBL
Match: A0A2I0X1H4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Dendrobium catenatum OX=906689 GN=MA16_Dca018704 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.8e-07
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 0 

Query: 5    PATSKNKCPRD-DELVNPTTYRGLVGSIQYLTLTRPDIAFAINKACKKCNHP 56
            P + K  C  D  E  NPT YR LVG++QYLTLTRPDI +A+NKAC+  + P
Sbjct: 1099 PTSVKAVCSSDSSEFTNPTLYRQLVGALQYLTLTRPDITYAVNKACQHMHKP 1150

[Close]
BLAST of Cmc10g0279321 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 51.2 bits (121), Expect = 3.7e-07
Identity = 21/55 (38.18%), Postives = 35/55 (63.64%), Query Frame = 0 

Query: 1   MAQPPATSKNKCPRDDELVNPTTYRGLVGSIQYLTLTRPDIAFAINKACKKCNHP 56
           M+ P     N      +  +P+ +R +VG++QYLTLTRPDI++A+N  C++ + P
Sbjct: 77  MSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEP 131

The following BLAST results are available for this feature:
BLAST of Cmc10g0279321 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022157372.11.6e-1265.45uncharacterized protein LOC111024092 [Momordica charantia] >XP_022157373.1 uncha... [more]
XP_022139305.12.4e-0852.73uncharacterized protein LOC111010253 isoform X1 [Momordica charantia][more]
XP_019189700.14.5e-0747.27PREDICTED: uncharacterized protein LOC109184109 [Ipomoea nil][more]
XP_019156986.14.5e-0747.27PREDICTED: uncharacterized protein LOC109153587 [Ipomoea nil][more]
XP_022141787.14.5e-0760.00uncharacterized protein LOC111012071 [Momordica charantia][more]
BLAST of Cmc10g0279321 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P925195.1e-0638.18Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ... [more]
Q9ZT945.1e-0644.64Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
Q94HW28.8e-0651.28Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
BLAST of Cmc10g0279321 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DUB47.7e-1365.45uncharacterized protein LOC111024092 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A6J1CBZ11.1e-0852.73uncharacterized protein LOC111010253 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A6J1CKU62.2e-0760.00uncharacterized protein LOC111012071 OS=Momordica charantia OX=3673 GN=LOC111012... [more]
A0A7T0BR624.8e-0755.77Uncharacterized protein OS=Dendrobium nobile OX=94219 PE=2 SV=1[more]
A0A2I0X1H44.8e-0755.77Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Dendrobium catena... [more]
BLAST of Cmc10g0279321 vs. TAIR 10
Match NameE-valueIdentityDescription
ATMG00810.13.7e-0738.18DNA/RNA polymerases superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc10g0279321.1Cmc10g0279321.1mRNA