Cmc10g0279291 (gene) Melon (Charmono) v1.1

Overview
NameCmc10g0279291
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionNBS-LRR type resistance protein
LocationCMiso1.1chr10: 16399867 .. 16401948 (-)
RNA-Seq ExpressionCmc10g0279291
SyntenyCmc10g0279291
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTAGAGATAAGTTGAGTTTCCTTGCAAGAGTGAAGTTAAAGCAAGAGGGTATTGGCGTCAAGTTGCAGTTGGGTGTTCCACCAAGAGACATCCACGAAGTCAAGGGTGTTGGCTAGTTTGAGCTGAAGAGGAAGAGTATAGCTTGAGGCTAGATCCAAGTAAGTTTAAGTTTCTCCTTTCTCATTTAAGAAGTTTAAGAGCAACTTACTAAGTTGGGATTTCTTATTTTAGGCACTAGATCTGCGAGCTCATGTTGAGCTATGGCAAGTTTAAAGAACCGGTCTTGAGCAAGCTAAGATCCCCCAAAGAATTCAAAGAAATCAAGATTAGTAAGAAAACGTTTACTTGAGAAGAAAAAGGAAAATGGTAAGGAAGTTGAAGAATTTTCTCTTTGTTGGGACCCATTAATTTACTTGATGTTTATGCTTATTTTTAGAGTAGAGGAAATATGGCAAATGTATAAATCAAGAATCTAGCTAAAAGTTGTGAGCGACAAAAATGAATTTTAAACGAATTTCTAAGCTTGATTAAAGAATTTATGTTTTAAAGCATACTTTGAGTTTAAGCATTTGAATATGCTTGATTTATGAATTAAATAGAAAGCATGAGTTTCAAGTTTAGAAATGAGTTATAAGAATGCATGATTGAGTTAAATTTCTAAACCATTCAAATTGAGAAATGTTTCTTAAAACATGAGGTTTATGAAAACGTGTTTGAATGCTAAGTTTATGCAAGTATTTGAGCAAAGAGATTATTTAAAGCAAAGCTAGATATGAGACTTGCTTAATGCAAGAGTTTTTTATAAGCATGCTAACTTAAGCAAGTTAAAGTTTTAGCATGAGATTTATGAATATGCTTAAGTTTATATCGAGATATTTTGATTTGATAGCAACCCTACGAGGGAGATTGTCATGTGCACAGAGGTTGTGTGATGAGGGTATCCAGTAGATGCCAAGAGTTTCCATCACATAGACAAAGTAAGAGACGAGGGCCTCCTTGGATGCCTAGATTTTCTATCTCATGAAGGTATAGCAAGATAGGGTGCTATTGGAGCTTCGTCTCGTAGGTATCGTTTCACGGGATAGAGTTTTCATGCTTAGAGTTTCATCCCGTAGATATAAGAAGTTCAAGGTATAGCAAGAAAGAAAAGAGAAAGTTGAAAGCTAAGTTTGAAAAGAAAGTTGCTTTATGAAGTTTATGTATATTATTTTGCTATGAGTTTTTATTATCATGTTTAATTGAAAAGGGATAGTTAAGAGATGCAGGTTAAGCAGAATCGAGAGGTGTCATTAGAAGAAGAATGATGCAAGTTGGCTTTATGCTGCATCTCGAGCCTAGTTAGGAGGTGCTTTGGGATGGGGTATGACAAAAAATTTACTATTAAAACATATAACTATTTAAATCGCGTGATCTTGCGAAAAGAATTGCAATGCTTCATGGTTGAGAGTTATTCAATAAATATGTTGCTAAAAAACCCCACTCGCTAGATACTTTTGTCTAATCTTTCAAATGCTTTGTATTATCCCCCCCCCCCCCCCCCCCCCCCCACTTGCCAAATTGAATATTTGTCATGCCATAATTGAGTCACATCAACTTGTTAGTATTCACAGTCAATTCGCTTAACATGAACAGTTTTAGGCAAGATAAGATGATCAAGTTATTGTTTTCGGGACTTATATATCTTCAATTTTAAAGAAACTTTCTATACTCTTGTTTCAAATGTACTCTTTTATCAAATATCAATGAAGTCCTTATTATCTCAAATGAGTTCTCATTTTGCGTTAAGATTAATGTTTGTGTTTATTCTGCTCACTAGACGTTCTACATGTTATCTCGCGGAGAGATTGGCGTTGAATGTTTAGACGGTCATGCCTTCATATGGTCGCAAGAAGTCATTTTGGGGCGGAACGTGAAACACATTGGGTCATTGCATTTGTATCAATTACAAAGTAAGTCGTACTCATAGTGTAAGTCGTACTCATAGTGTTACCAAAATAAGGTACTCAACCTTATCCCTATAATATAGACCTTTAAGCTGTATCTCGAATATCGATCCTTATATGTTTCTACGTTAAGACTCA

mRNA sequence

AGTAGAGATAAGTTGAGTTTCCTTGCAAGAGTGAAGTTAAAGCAAGAGGGTATTGGCGTCAAGTTGCAGTTGGGTGTTCCACCAAGAGACATCCACGAAGTCAAGGGTGTTGGCTAGTTTGAGCTGAAGAGGAAGAGTATAGCTTGAGGCTAGATCCAAGCACTAGATCTGCGAGCTCATGTTGAGCTATGGCAAGTTTAAAGAACCGGTCTTGAGCAAGCTAAGATCCCCCAAAGAATTCAAAGAAATCAAGATTAGTAAGAAAACGTTTACTTGAGAAGAAAAAGGAAAATGCAACCCTACGAGGGAGATTGTCATGTGCACAGAGGTTGTGTGATGAGGGTATCCAGTAGATGCCAAGAGTTTCCATCACATAGACAAAGTAAGAGACGAGGGCCTCCTTGGATGCCTAGATTTTCTATCTCATGAAGGTATAGCAAGATAGGGTGCTATTGGAGCTTCGTCTCGTAGGTATCGTTTCACGGGATAGAGTTTTCATGCTTAGAGTTTCATCCCGTAGATATAAGAAGTTCAAGGTATAGCAAGAAAGAAAAGAGAAAGTTGAAAGCTAAGTTTGAAAAGAAAGTTGCTTTATGAAGTTTATGTATATTATTTTGCTATGAGTTTTTATTATCATGTTTAATTGAAAAGGGATAGTTAAGAGATGCAGGTTAAGCAGAATCGAGAGGTGTCATTAGAAGAAGAATGATGCAAGTTGGCTTTATGCTGCATCTCGAGCCTAGTTAGGAGGTGCTTTGGGATGGGACGTTCTACATGTTATCTCGCGGAGAGATTGGCGTTGAATGTTTAGACGGTCATGCCTTCATATGGTCGCAAGAAGTCATTTTGGGGCGGAACGTGAAACACATTGGGTCATTGCATTTGTATCAATTACAAAGTAAGTCGTACTCATAGTGTAAGTCGTACTCATAGTGTTACCAAAATAAGGTACTCAACCTTATCCCTATAATATAGACCTTTAAGCTGTATCTCGAATATCGATCCTTATATGTTTCTACGTTAAGACTCA

Coding sequence (CDS)

ATGCAACCCTACGAGGGAGATTGTCATGTGCACAGAGGTTGTGTGATGAGGGTATCCAGTAGATGCCAAGAGTTTCCATCACATAGACAAAGTAAGAGACGAGGGCCTCCTTGGATGCCTAGATTTTCTATCTCATGA

Protein sequence

MQPYEGDCHVHRGCVMRVSSRCQEFPSHRQSKRRGPPWMPRFSIS
Homology
[Close]
BLAST of Cmc10g0279291 vs. NCBI nr
Match: KAA0060075.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 53.5 bits (127), Expect = 5.4e-04
Identity = 24/29 (82.76%), Postives = 25/29 (86.21%), Query Frame = 0 

Query: 2  QPYEGDCHVHRGCVMRVSSRCQEFPSHRQ 31
          QPY GDC VH+G VMRVSSR QEFPSHRQ
Sbjct: 17 QPYGGDCLVHKGRVMRVSSRFQEFPSHRQ 45

[Close]
BLAST of Cmc10g0279291 vs. ExPASy TrEMBL
Match: A0A5A7V2H2 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold160G00440 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.6e-04
Identity = 24/29 (82.76%), Postives = 25/29 (86.21%), Query Frame = 0 

Query: 2  QPYEGDCHVHRGCVMRVSSRCQEFPSHRQ 31
          QPY GDC VH+G VMRVSSR QEFPSHRQ
Sbjct: 17 QPYGGDCLVHKGRVMRVSSRFQEFPSHRQ 45

The following BLAST results are available for this feature:
BLAST of Cmc10g0279291 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0060075.15.4e-0482.76NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
BLAST of Cmc10g0279291 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc10g0279291 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V2H22.6e-0482.76NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
BLAST of Cmc10g0279291 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..45

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc10g0279291.1Cmc10g0279291.1mRNA