Cmc10g0279271 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc10g0279271
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ribosome biogenesis protein BRX1-like protein
Location	CMiso1.1chr10: 16392103 .. 16394565 (+)
RNA-Seq Expression	Cmc10g0279271
Synteny	Cmc10g0279271

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCGCCGACAACGACGACAATCCACGCCGCAATTGTAAGTCGCGCTCCTCCTCACCGATCGTCACACTATAAGTCGTCGCTCCTCCGCTCCTGTTGTATGCTGTAGACGCCGCCGCTCTCTGATGTACGCCCTCTTTCTCCTCCAAATGAAAGGTAAACTTTCTCTATAACCTCCATTGTTACGTGCTTTACCATATCTGAAGCTTTTCTCTGTTACATTCATGTGGTTTAGCCATTAGAAAACAAAATGGAAAGGAGATAGTACGGATAGAAAAGAAAAAGAGAAAAAAAAAAGACAACAAATTAGAAAGAGGACCTAAAGATGGGAATTGTTGGCATGACTATTGTTGCCAATTCCTCCCCTTATGTGAAATTTTTTCTCAATATTCATATGGGTAAAGATTGGGAGTTTGGGACCGTTCTTCTCTCGATTTTTCTTCTTCTAGGCTTGGATGAGTTCATGCCCCTTTTAAATGTAGAATTTGAAAAAAGTATGTAACTATTTTTGTACACCCCCTCCCGGATTGGAACAAATAATTACCATAATTTATTCTTTTCTTATGATATTTCCTTTCATAAATAGTGGCTACTTTCTTACCTTCTTGAGAGGGTCCATTGTGTTGATTCAGAAAATGTAATAAGTGATGCACACTAGGGGTTGTTTGCCCAAGGTGGAATGAGATGGTTTGGGTCATGACAAACTAATTCCGTTTTTCACTTTTTTTAGCCTTCATAATCTTATTTCTATTGTACCATCAATTCTTTATGCATTTCAATGTCAATCATATTTTCATTAAATCTGATTACATTTTAGTCTTTAATCTACTCTTTAAATAACATGTGAGACTTTAAAATTTTGAGTCTTCAAACCACTGCTCTATGATTTCTGTTGGTTGTTGGGATTAATATTTTCAAAATGTGCTTTTACTTGTACGACTTCATACTATGGTTGGCTATTGGATCTTAAATCATGTCTAAATTTTTATTTTGTTGGAAATAACAAATTTCTTTCCTTCTTAAAGTTGTAGAATTGGGATTCTTTTGCTTTTGGATTATATTGAGTTTATATATCTATATTTTTTCTTTTTTATAACTAAAACGTTAAAGCTTCCGACCGTCGACCAGCGTCCTTCAAACAGTCCTACTAGACGAAAACGAAAATCTACTGGCCAAAATGAGAAGCGGTCGCTTGATGAAAGCGAAAAGGGTGAATAAAAATGAAAACGCTTTGTTCTGTACGACCGCCGACCGTTAACCTATTGAAGTTATCCTTGTTCTTTATAGAAAATCTTAGAAGATGGATGTTTCAACATTTACCATTCATTTTTCTTTGCAGGTGGTCCTAAACAAAAAGAAAGAATTTCAATAGCAAAGGGTTGTTCTTTTTCTAAGAATAGGTGCAATGAGGTATGTTAGGTTATGTTTCGTTTCACTTGAATTCGTAATATGCTTTTCTACACTCTCATGAGTCATTCATCTAAGGAAAAGTGTTATATCCTTTCCAATACACCCATAGTTATTATTTATACACTTGCGTGGGTTGACAAAGCATCTTCAAAATTACTGAGGATAGGCCATGATTATAGTTCAAGGAATTGGATCTTTCAACTTCAACATCCTGGTTATTAAGGCAATAACTTTGGTAGTATATGAATCCAAAACCTTTTTTATGTATTGAATATCAGGAAAGGTTTACAGCATCGTAGTTAAACAATATTATGATGTAATTGTTTCTTTTTCTAGAATAAGTGTTGAATGTTCTATCAAGTTTAGTTCAATTGGAATGTAAATAAGAGCAAGATTTTCTTCATTGCTGGGTAATGTTATGATGGAAAATATTATGATAGAATGGTTGCAATGGCTATTTTACTCTTTCCAGAGAACATGGTAGCATGGGCTTTTTCTTACCAAGTTGATTCAATTCTCATTTTGGTAGCTCCTCTCTTCTTCGATCTTGATCTCTATGATCACTTACTTGCATGCTTTAGATTTAATTGGCATTTTGCATAAGAAAGCTAAAAGACTCTATGTTTGTTCCTATCTCAATCTACTTGGGATGATGAACTTTTTTTTTTATCTTGATTGCATTTTTGTTCTTTTAGTTCAATGATTTTGGTACTGATGGAGGACCGGCACCCAAGTATCTTAATCCAAGTTTTCTTACTTCTCCATTTTTTTTTGCTTTCAGTGCAATAGAAGAATTGAAGCTTATAGGGAACTATCTTAAAGGTTCCCGTCCAATTTTGACATTTTCATCGAATTTTGATAAAGATGTCCTCCGGAAACTTCTGAAGGAAATGATTATTCAGGTACCAATGGCAAAGTTATAGAATTTAATGCGTATGCAAACATTTTCTACTTGCTACAAAATTTAATGCTAATTGTGGATAGCATCCAAAAGTACAACCTCCCCTTGACACCTAAATAATGCACTGGATGTTGTCTTTCTTCTAAATGTTTGCT

mRNA sequence

GCCGCCGACAACGACGACAATCCACGCCGCAATTGTAAGTCGCGCTCCTCCTCACCGATCGTCACACTATAAGTCGTCGCTCCTCCGCTCCTGTTGTATGCTGTAGACGCCGCCGCTCTCTGATGTACGCCCTCTTTCTCCTCCAAATGAAAGGTGGTCCTAAACAAAAAGAAAGAATTTCAATAGCAAAGGGTTGTTCTTTTTCTAAGAATAGGTGCAATGAGTGCAATAGAAGAATTGAAGCTTATAGGGAACTATCTTAAAGGTTCCCGTCCAATTTTGACATTTTCATCGAATTTTGATAAAGATGTCCTCCGGAAACTTCTGAAGGAAATGATTATTCAGGTACCAATGGCAAAGTTATAGAATTTAATGCGTATGCAAACATTTTCTACTTGCTACAAAATTTAATGCTAATTGTGGATAGCATCCAAAAGTACAACCTCCCCTTGACACCTAAATAATGCACTGGATGTTGTCTTTCTTCTAAATGTTTGCT

Coding sequence (CDS)

ATGAGTGCAATAGAAGAATTGAAGCTTATAGGGAACTATCTTAAAGGTTCCCGTCCAATTTTGACATTTTCATCGAATTTTGATAAAGATGTCCTCCGGAAACTTCTGAAGGAAATGATTATTCAGGTACCAATGGCAAAGTTATAG

Protein sequence

MSAIEELKLIGNYLKGSRPILTFSSNFDKDVLRKLLKEMIIQVPMAKL

Homology

[Close]

BLAST of Cmc10g0279271 vs. NCBI nr
Match: KAA0031641.1 (ribosome biogenesis protein BRX1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 87.4 bits (215), Expect = 3.6e-14
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = 0


Query: 2   SAIEELKLIGNYLKGSRPILTFSSNFDKDVLRKLLKEMIIQVPMAKL 49
           SA+EELKLIGNYLKGSRPILTFSSNFDKDVL KL+KEMIIQVPMAKL
Sbjct: 72  SAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQVPMAKL 118

[Close]

BLAST of Cmc10g0279271 vs. NCBI nr
Match: XP_008456708.1 (PREDICTED: ribosome biogenesis protein BRX1 homolog [Cucumis melo])

HSP 1 Score: 80.5 bits (197), Expect = 4.4e-12
Identity = 40/48 (83.33%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 1  MSAIEELKLIGNYLKGSRPILTFSSNFDKDVLRKLLKEMIIQVPMAKL 49
          MSA+EELKLIGNYLKGSRPILTFSSNFDKDVL KL+KEMIIQV  +++
Sbjct: 29 MSAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQVVASRI 76

[Close]

BLAST of Cmc10g0279271 vs. NCBI nr
Match: XP_008460241.1 (PREDICTED: ribosome biogenesis protein BRX1 homolog [Cucumis melo] >XP_008460242.1 PREDICTED: ribosome biogenesis protein BRX1 homolog [Cucumis melo])

HSP 1 Score: 80.1 bits (196), Expect = 5.7e-12
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 1  MSAIEELKLIGNYLKGSRPILTFSSNFDKDVLRKLLKEMIIQ 43
          MSAIEELKLIGNYLKGSRPILTFSSNFDKDVL KLLKEMIIQ
Sbjct: 1  MSAIEELKLIGNYLKGSRPILTFSSNFDKDVLWKLLKEMIIQ 42

[Close]

BLAST of Cmc10g0279271 vs. NCBI nr
Match: XP_011659901.2 (ribosome biogenesis protein BRX1 homolog 1 [Cucumis sativus] >XP_031743378.1 ribosome biogenesis protein BRX1 homolog 1 [Cucumis sativus] >XP_031743380.1 ribosome biogenesis protein BRX1 homolog 1 [Cucumis sativus])

HSP 1 Score: 70.1 bits (170), Expect = 5.9e-09
Identity = 35/43 (81.40%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 1   MSAIEELKLIGNYLKGSRPILTFSSNFDKDVLRKLLKEMIIQV 44
           M  +EELKL GN+LKGSRPILTFSSNFDKDV  KLLKEMIIQ+
Sbjct: 142 MHTMEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQI 184

[Close]

BLAST of Cmc10g0279271 vs. NCBI nr
Match: XP_031741723.1 (ribosome biogenesis protein BRX1 homolog 2-like [Cucumis sativus])

HSP 1 Score: 70.1 bits (170), Expect = 5.9e-09
Identity = 35/43 (81.40%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 1   MSAIEELKLIGNYLKGSRPILTFSSNFDKDVLRKLLKEMIIQV 44
           M  +EELKL GN+LKGSRPILTFSSNFDKDV  KLLKEMIIQ+
Sbjct: 114 MHTMEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQI 156

[Close]

BLAST of Cmc10g0279271 vs. ExPASy Swiss-Prot
Match: Q9C928 (Ribosome biogenesis protein BRX1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=BRIX1-2 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.3e-10
Identity = 31/41 (75.61%), Postives = 36/41 (87.80%), Query Frame = 0


Query: 3   AIEELKLIGNYLKGSRPILTFSSNFDKDVLRKLLKEMIIQV 44
           A+EE+KL GN+LKGSRP+LTFSSNFDKD   KLLKEM+ QV
Sbjct: 146 AMEEMKLTGNHLKGSRPLLTFSSNFDKDAHWKLLKEMLTQV 186

[Close]

BLAST of Cmc10g0279271 vs. ExPASy Swiss-Prot
Match: Q9LE16 (Ribosome biogenesis protein BRX1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=BRIX1-1 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 8.0e-09
Identity = 28/40 (70.00%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 4   IEELKLIGNYLKGSRPILTFSSNFDKDVLRKLLKEMIIQV 44
           +EELKL GN+LKGSRP+LTFSSNF+ D   KLLKEM+ Q+
Sbjct: 143 MEELKLTGNHLKGSRPLLTFSSNFENDAHWKLLKEMLTQI 182

[Close]

BLAST of Cmc10g0279271 vs. ExPASy Swiss-Prot
Match: Q54JN0 (Ribosome biogenesis protein BRX1 homolog OS=Dictyostelium discoideum OX=44689 GN=bxdc2 PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 1.2e-04
Identity = 20/40 (50.00%), Postives = 30/40 (75.00%), Query Frame = 0


Query: 4   IEELKLIGNYLKGSRPILTFSSNFDKDVLRKLLKEMIIQV 44
           ++EL++ GN LKGSRP L F  +FD +V  +L+KE+I Q+
Sbjct: 164 LDELQMTGNCLKGSRPFLHFDKSFDSEVHLQLIKELITQI 203

[Close]

BLAST of Cmc10g0279271 vs. ExPASy Swiss-Prot
Match: Q8UVY2 (Ribosome biogenesis protein BRX1 homolog OS=Xenopus laevis OX=8355 GN=brix1 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 2.1e-04
Identity = 21/40 (52.50%), Postives = 29/40 (72.50%), Query Frame = 0


Query: 4   IEELKLIGNYLKGSRPILTFSSNFDKDVLRKLLKEMIIQV 44
           + ELK+ GN LKGSRPIL+F   FD++    LLKE++ Q+
Sbjct: 142 LAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLTQI 181

[Close]

BLAST of Cmc10g0279271 vs. ExPASy Swiss-Prot
Match: Q9VZE6 (Ribosome biogenesis protein BRX1 homolog OS=Drosophila melanogaster OX=7227 GN=CG11583 PE=2 SV=2)

HSP 1 Score: 45.1 bits (105), Expect = 2.7e-04
Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 0


Query: 6   ELKLIGNYLKGSRPILTFSSNFDKDVLRKLLKEMIIQ 43
           ELK+ GN L+GSRP+L+F S FD+    KLLKE+ +Q
Sbjct: 143 ELKMTGNCLRGSRPLLSFDSKFDELPHLKLLKELFVQ 179

[Close]

BLAST of Cmc10g0279271 vs. ExPASy TrEMBL
Match: A0A5A7SQ25 (Ribosome biogenesis protein BRX1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G004140 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.7e-14
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = 0


Query: 2   SAIEELKLIGNYLKGSRPILTFSSNFDKDVLRKLLKEMIIQVPMAKL 49
           SA+EELKLIGNYLKGSRPILTFSSNFDKDVL KL+KEMIIQVPMAKL
Sbjct: 72  SAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQVPMAKL 118

[Close]

BLAST of Cmc10g0279271 vs. ExPASy TrEMBL
Match: A0A1S3C4K0 (ribosome biogenesis protein BRX1 homolog OS=Cucumis melo OX=3656 GN=LOC103496572 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.1e-12
Identity = 40/48 (83.33%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 1  MSAIEELKLIGNYLKGSRPILTFSSNFDKDVLRKLLKEMIIQVPMAKL 49
          MSA+EELKLIGNYLKGSRPILTFSSNFDKDVL KL+KEMIIQV  +++
Sbjct: 29 MSAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQVVASRI 76

[Close]

BLAST of Cmc10g0279271 vs. ExPASy TrEMBL
Match: A0A1S3CC56 (ribosome biogenesis protein BRX1 homolog OS=Cucumis melo OX=3656 GN=LOC103499121 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.8e-12
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 1  MSAIEELKLIGNYLKGSRPILTFSSNFDKDVLRKLLKEMIIQ 43
          MSAIEELKLIGNYLKGSRPILTFSSNFDKDVL KLLKEMIIQ
Sbjct: 1  MSAIEELKLIGNYLKGSRPILTFSSNFDKDVLWKLLKEMIIQ 42

[Close]

BLAST of Cmc10g0279271 vs. ExPASy TrEMBL
Match: A0A1S3BQS3 (ribosome biogenesis protein BRX1-like OS=Cucumis melo OX=3656 GN=LOC103492188 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 8.4e-09
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 0


Query: 4   IEELKLIGNYLKGSRPILTFSSNFDKDVLRKLLKEMIIQV 44
           +EELKL GN+LKGSRPILTFSSNFDKDV  KLLKEMIIQ+
Sbjct: 145 MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQI 184

[Close]

BLAST of Cmc10g0279271 vs. ExPASy TrEMBL
Match: A0A5D3CG95 (Ribosome biogenesis protein BRX1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003710 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 8.4e-09
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 0


Query: 4   IEELKLIGNYLKGSRPILTFSSNFDKDVLRKLLKEMIIQV 44
           +EELKL GN+LKGSRPILTFSSNFDKDV  KLLKEMIIQ+
Sbjct: 145 MEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQI 184

[Close]

BLAST of Cmc10g0279271 vs. TAIR 10
Match: AT1G52930.1 (Ribosomal RNA processing Brix domain protein )

HSP 1 Score: 64.7 bits (156), Expect = 2.3e-11
Identity = 31/41 (75.61%), Postives = 36/41 (87.80%), Query Frame = 0


Query: 3   AIEELKLIGNYLKGSRPILTFSSNFDKDVLRKLLKEMIIQV 44
           A+EE+KL GN+LKGSRP+LTFSSNFDKD   KLLKEM+ QV
Sbjct: 146 AMEEMKLTGNHLKGSRPLLTFSSNFDKDAHWKLLKEMLTQV 186

[Close]

BLAST of Cmc10g0279271 vs. TAIR 10
Match: AT3G15460.1 (Ribosomal RNA processing Brix domain protein )

HSP 1 Score: 60.1 bits (144), Expect = 5.7e-10
Identity = 28/40 (70.00%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 4   IEELKLIGNYLKGSRPILTFSSNFDKDVLRKLLKEMIIQV 44
           +EELKL GN+LKGSRP+LTFSSNF+ D   KLLKEM+ Q+
Sbjct: 143 MEELKLTGNHLKGSRPLLTFSSNFENDAHWKLLKEMLTQI 182

The following BLAST results are available for this feature:

BLAST of Cmc10g0279271 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031641.1	3.6e-14	93.62	ribosome biogenesis protein BRX1-like protein [Cucumis melo var. makuwa]	[more]
XP_008456708.1	4.4e-12	83.33	PREDICTED: ribosome biogenesis protein BRX1 homolog [Cucumis melo]	[more]
XP_008460241.1	5.7e-12	97.62	PREDICTED: ribosome biogenesis protein BRX1 homolog [Cucumis melo] >XP_008460242...	[more]
XP_011659901.2	5.9e-09	81.40	ribosome biogenesis protein BRX1 homolog 1 [Cucumis sativus] >XP_031743378.1 rib...	[more]
XP_031741723.1	5.9e-09	81.40	ribosome biogenesis protein BRX1 homolog 2-like [Cucumis sativus]	[more]

BLAST of Cmc10g0279271 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C928	3.3e-10	75.61	Ribosome biogenesis protein BRX1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=BR...	[more]
Q9LE16	8.0e-09	70.00	Ribosome biogenesis protein BRX1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=BR...	[more]
Q54JN0	1.2e-04	50.00	Ribosome biogenesis protein BRX1 homolog OS=Dictyostelium discoideum OX=44689 GN...	[more]
Q8UVY2	2.1e-04	52.50	Ribosome biogenesis protein BRX1 homolog OS=Xenopus laevis OX=8355 GN=brix1 PE=2...	[more]
Q9VZE6	2.7e-04	56.76	Ribosome biogenesis protein BRX1 homolog OS=Drosophila melanogaster OX=7227 GN=C...	[more]

BLAST of Cmc10g0279271 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SQ25	1.7e-14	93.62	Ribosome biogenesis protein BRX1-like protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3C4K0	2.1e-12	83.33	ribosome biogenesis protein BRX1 homolog OS=Cucumis melo OX=3656 GN=LOC103496572...	[more]
A0A1S3CC56	2.8e-12	97.62	ribosome biogenesis protein BRX1 homolog OS=Cucumis melo OX=3656 GN=LOC103499121...	[more]
A0A1S3BQS3	8.4e-09	85.00	ribosome biogenesis protein BRX1-like OS=Cucumis melo OX=3656 GN=LOC103492188 PE...	[more]
A0A5D3CG95	8.4e-09	85.00	Ribosome biogenesis protein BRX1-like OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]

BLAST of Cmc10g0279271 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G52930.1	2.3e-11	75.61	Ribosomal RNA processing Brix domain protein	[more]
AT3G15460.1	5.7e-10	70.00	Ribosomal RNA processing Brix domain protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR13634:SF3	RIBOSOME BIOGENESIS PROTEIN BRX1 HOMOLOG 2	coord: 3..43
IPR026532	Ribosome biogenesis protein BRX1	PANTHER	PTHR13634	RIBOSOME BIOGENESIS PROTEIN BRIX	coord: 3..43

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc10g0279271.1	Cmc10g0279271.1	mRNA