Cmc10g0278821 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc10g0278821
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr10: 15605962 .. 15606832 (+)
RNA-Seq Expression	Cmc10g0278821
Synteny	Cmc10g0278821

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCCCCGCAGAATTGAAAGAACTGAAGGTACAGTTACAGGAATTGCTTGATAAGGGATTCATTCGACCGAGCGTGTCACCTTGGGGTGCGCCAGTCTTATTCGTTAAGAAGAAGGATGGGTCGATGCGTCTATGCATTGACTATAGGGAGTTGAACAAAGTAACGGTAAAGAACAGATATCCCTTACCCAGGATAGACGATCTATTTGACCAGTTACAGGGAGCCACAGTGTTCTCTAAGATTGATCTTCGGTCAGGATACCATCAGCTGAGGATTAAGGATGAGGATATACCGAAGACAGCATTTCGATCCAGATATGGACACTACGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCGGCAGTGTTTATGGACTTGATGAACAGAGTGTGTTAGGGAGTTCCTAGATACTTTCGTGATTGTGTTTATCGACGATATCTTGATATACTCTAAGACGGAGGCCGAACACGAGGAGCATTTACGTATGGTTTTGCAAACACTTCGGGATAATAAGTTGTACGCAAAGTTCTCGAAGTGCGAGTTTTGGCTGAAACAGGTGTCCTTTCTGGGCCACGTGGTTTCTAAGGCTGGAGTCTCTGTGGATCCAGCTAAGATAGAGGCAGTCACTGGTTGGACCCGACCTTCCACAGTCAGTGAGGTTCGTAGCTTTCTGGGTTTAGCAGGCTATTATCGACGGTTTGTGGAGAAACTTTCTCGTATAGCTACTCCTCTTACTCAGTTGACCAGAAAGGGAGCTCCTTTTGTTTGGAGCAAGGCATGTGAGGACAGTTTCCAGACCCTTAAACAGAAGCTAGTTACCGCACCAGTCCTCACGGTACCGATGGTTCTGGCAGTTTCGTGA

mRNA sequence

ATGGCCCCCGCAGAATTGAAAGAACTGAAGGTACAGTTACAGGAATTGCTTGATAAGGGATTCATTCGACCGAGCGTGTCACCTTGGGGTGCGCCAGTCTTATTCGTTAAGAAGAAGGATGGGTCGATGCGTCTATGCATTGACTATAGGGAGTTGAACAAAGTAACGGTAAAGAACAGATATCCCTTACCCAGGATAGACGATCTATTTGACCAGTTACAGGGAGCCACAGTGTTCTCTAAGATTGATCTTCGGTCAGGATACCATCAGCTGAGGATTAAGGATGAGGATATACCGAAGACAGCATTTCGATCCAGATATGGACACTACGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCGGCAGTGTTTATGGACTTGATGAACAGAGTGTCCTTTCTGGGCCACGTGGTTTCTAAGGCTGGAGTCTCTGTGGATCCAGCTAAGATAGAGGCAGTCACTGGTTGGACCCGACCTTCCACAGTCAGTGAGGTTCGTAGCTTTCTGGGTTTAGCAGGCTATTATCGACGGTTTGTGGAGAAACTTTCTCGTATAGCTACTCCTCTTACTCAGTTGACCAGAAAGGGAGCTCCTTTTGTTTGGAGCAAGGCATGTGAGGACAGTTTCCAGACCCTTAAACAGAAGCTAGTTACCGCACCAGTCCTCACGGTACCGATGGTTCTGGCAGTTTCGTGA

Coding sequence (CDS)

ATGGCCCCCGCAGAATTGAAAGAACTGAAGGTACAGTTACAGGAATTGCTTGATAAGGGATTCATTCGACCGAGCGTGTCACCTTGGGGTGCGCCAGTCTTATTCGTTAAGAAGAAGGATGGGTCGATGCGTCTATGCATTGACTATAGGGAGTTGAACAAAGTAACGGTAAAGAACAGATATCCCTTACCCAGGATAGACGATCTATTTGACCAGTTACAGGGAGCCACAGTGTTCTCTAAGATTGATCTTCGGTCAGGATACCATCAGCTGAGGATTAAGGATGAGGATATACCGAAGACAGCATTTCGATCCAGATATGGACACTACGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCGGCAGTGTTTATGGACTTGATGAACAGAGTGTCCTTTCTGGGCCACGTGGTTTCTAAGGCTGGAGTCTCTGTGGATCCAGCTAAGATAGAGGCAGTCACTGGTTGGACCCGACCTTCCACAGTCAGTGAGGTTCGTAGCTTTCTGGGTTTAGCAGGCTATTATCGACGGTTTGTGGAGAAACTTTCTCGTATAGCTACTCCTCTTACTCAGTTGACCAGAAAGGGAGCTCCTTTTGTTTGGAGCAAGGCATGTGAGGACAGTTTCCAGACCCTTAAACAGAAGCTAGTTACCGCACCAGTCCTCACGGTACCGATGGTTCTGGCAGTTTCGTGA

Protein sequence

MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVEKLSRIATPLTQLTRKGAPFVWSKACEDSFQTLKQKLVTAPVLTVPMVLAVS

Homology

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BLAST of Cmc10g0278821 vs. NCBI nr
Match: KAA0031895.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 443.0 bits (1138), Expect = 1.6e-120
Identity = 222/236 (94.07%), Postives = 223/236 (94.49%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 479 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 538

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDIPKTAFRSRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDED+PKTAFRSRYGHYEFIVMSFGLT
Sbjct: 539 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLT 598

Query: 121 NAPAVFMDLMNR---------VSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFL 180
           NAPAVFMDLMNR         VSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFL
Sbjct: 599 NAPAVFMDLMNRVFREFLDTFVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFL 658

Query: 181 GLAGYYRRFVEKLSRIATPLTQLTRKGAPFVWSKACEDSFQTLKQKLVTAPVLTVP 228
           GLAGYYRRFV   SRIATPLTQLTRKGAPFVWSKACEDSFQ LKQKLVTAPVLTVP
Sbjct: 659 GLAGYYRRFVGNFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVP 714

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BLAST of Cmc10g0278821 vs. NCBI nr
Match: KAA0058399.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 429.5 bits (1103), Expect = 1.9e-116
Identity = 224/283 (79.15%), Postives = 225/283 (79.51%), Query Frame = 0


Query: 1    MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
            MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 811  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 870

Query: 61   YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDIPKTAFRSRYGHYEFIVMSFGLT 120
            YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDED+PKTAFRSRYGHYEFIVMSFGLT
Sbjct: 871  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLT 930

Query: 121  NAPAVFMDLMNR------------------------------------------------ 180
            NAPAVFMDLMNR                                                
Sbjct: 931  NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRNNKLYAKFS 990

Query: 181  --------VSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVEKL 228
                    VSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVE  
Sbjct: 991  KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 1050

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BLAST of Cmc10g0278821 vs. NCBI nr
Match: TYK01613.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 429.5 bits (1103), Expect = 1.9e-116
Identity = 224/283 (79.15%), Postives = 225/283 (79.51%), Query Frame = 0


Query: 1    MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
            MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 834  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 893

Query: 61   YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDIPKTAFRSRYGHYEFIVMSFGLT 120
            YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDED+PKTAFRSRYGHYEFIVMSFGLT
Sbjct: 894  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLT 953

Query: 121  NAPAVFMDLMNR------------------------------------------------ 180
            NAPAVFMDLMNR                                                
Sbjct: 954  NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS 1013

Query: 181  --------VSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVEKL 228
                    VSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVE  
Sbjct: 1014 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 1073

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BLAST of Cmc10g0278821 vs. NCBI nr
Match: AAO45752.1 (pol protein [Cucumis melo subsp. melo])

HSP 1 Score: 428.3 bits (1100), Expect = 4.2e-116
Identity = 223/283 (78.80%), Postives = 225/283 (79.51%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDIPKTAFRSRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDED+PKTAFRSRYGHY+FIVMSFGLT
Sbjct: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYQFIVMSFGLT 120

Query: 121 NAPAVFMDLMNR------------------------------------------------ 180
           NAPAVFMDLMNR                                                
Sbjct: 121 NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS 180

Query: 181 --------VSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVEKL 228
                   VSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVE  
Sbjct: 181 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 240

[Close]

BLAST of Cmc10g0278821 vs. NCBI nr
Match: KAA0048687.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 427.6 bits (1098), Expect = 7.1e-116
Identity = 223/283 (78.80%), Postives = 224/283 (79.15%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 580 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 639

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDIPKTAFRSRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDED+PKTAFRSRYGHYEFIVMSFGLT
Sbjct: 640 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLT 699

Query: 121 NAPAVFMDLMNR------------------------------------------------ 180
           NAPAVFMDLMNR                                                
Sbjct: 700 NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS 759

Query: 181 --------VSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVEKL 228
                   VSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVE  
Sbjct: 760 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 819

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BLAST of Cmc10g0278821 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 3.9e-40
Identity = 93/283 (32.86%), Postives = 148/283 (52.30%), Query Frame = 0


Query: 7   KELKVQLQELLDKGFIRPSVSPWGAPVLFV-KKKDGS----MRLCIDYRELNKVTVKNRY 66
           +E++ Q+Q++L++G IR S SP+ +P+  V KK+D S     R+ IDYR+LN++TV +R+
Sbjct: 221 QEVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRH 280

Query: 67  PLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDIPKTAFRSRYGHYEFIVMSFGLTN 126
           P+P +D++  +L     F+ IDL  G+HQ+ +  E + KTAF +++GHYE++ M FGL N
Sbjct: 281 PIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKN 340

Query: 127 APAVFMDLMNRV------------------------------------------------ 186
           APA F   MN +                                                
Sbjct: 341 APATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDK 400

Query: 187 --------SFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVEKLS 228
                   +FLGHV++  G+  +P KIEA+  +  P+   E+++FLGL GYYR+F+   +
Sbjct: 401 CEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFA 460

[Close]

BLAST of Cmc10g0278821 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 5.1e-40
Identity = 90/282 (31.91%), Postives = 143/282 (50.71%), Query Frame = 0


Query: 8   ELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD-----GSMRLCIDYRELNKVTVKNRYP 67
           E++ Q+QE+L++G IR S SP+ +P   V KK         R+ IDYR+LN++T+ +RYP
Sbjct: 221 EVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYP 280

Query: 68  LPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDIPKTAFRSRYGHYEFIVMSFGLTNA 127
           +P +D++  +L     F+ IDL  G+HQ+ + +E I KTAF ++ GHYE++ M FGL NA
Sbjct: 281 IPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNA 340

Query: 128 PAVFMDLMNRV------------------------------------------------- 187
           PA F   MN +                                                 
Sbjct: 341 PATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKC 400

Query: 188 -------SFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVEKLSR 228
                  +FLGH+V+  G+  +P K++A+  +  P+   E+R+FLGL GYYR+F+   + 
Sbjct: 401 EFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYAD 460

[Close]

BLAST of Cmc10g0278821 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.2e-38
Identity = 90/292 (30.82%), Postives = 141/292 (48.29%), Query Frame = 0


Query: 8   ELKVQLQELLDKGFIRPSVSPWGAPVLFVKKK-----DGSMRLCIDYRELNKVTVKNRYP 67
           E++ Q+ ELL  G IRPS SP+ +P+  V KK     +   R+ +D++ LN VT+ + YP
Sbjct: 138 EVERQIDELLQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYP 197

Query: 68  LPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDIPKTAFRSRYGHYEFIVMSFGLTNA 127
           +P I+     L  A  F+ +DL SG+HQ+ +K+ DIPKTAF +  G YEF+ + FGL NA
Sbjct: 198 IPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNA 257

Query: 128 PAVFMDLMN--------------------------------------------------- 187
           PA+F  +++                                                   
Sbjct: 258 PAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKS 317

Query: 188 -----RVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVEKLSR 228
                +V FLG++V+  G+  DP K+ A++    P++V E++ FLG+  YYR+F++  ++
Sbjct: 318 HFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAK 377

[Close]

BLAST of Cmc10g0278821 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 155.6 bits (392), Expect = 6.8e-37
Identity = 89/272 (32.72%), Postives = 132/272 (48.53%), Query Frame = 0


Query: 7   KELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRI 66
           +E+   +Q+LLD  FI PS SP  +PV+ V KKDG+ RLC+DYR LNK T+ + +PLPRI
Sbjct: 636 QEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRI 695

Query: 67  DDLFDQLQGATVFSKIDLRSGYHQLRIKDEDIPKTAFRSRYGHYEFIVMSFGLTNAPAVF 126
           D+L  ++  A +F+ +DL SGYHQ+ ++ +D  KTAF +  G YE+ VM FGL NAP+ F
Sbjct: 696 DNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTF 755

Query: 127 MDLM------------------------------------------------------NR 186
              M                                                        
Sbjct: 756 ARYMADTFRDLRFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEE 815

Query: 187 VSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVEKLSRIATPLT 225
             FLG+ +    ++    K  A+  +  P TV + + FLG+  YYRRF+   S+IA P+ 
Sbjct: 816 TEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPIQ 875

[Close]

BLAST of Cmc10g0278821 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 155.2 bits (391), Expect = 8.9e-37
Identity = 89/272 (32.72%), Postives = 131/272 (48.16%), Query Frame = 0


Query: 7   KELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRI 66
           +E+   +Q+LLD  FI PS SP  +PV+ V KKDG+ RLC+DYR LNK T+ + +PLPRI
Sbjct: 610 QEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRI 669

Query: 67  DDLFDQLQGATVFSKIDLRSGYHQLRIKDEDIPKTAFRSRYGHYEFIVMSFGLTNAPAVF 126
           D+L  ++  A +F+ +DL SGYHQ+ ++ +D  KTAF +  G YE+ VM FGL NAP+ F
Sbjct: 670 DNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTF 729

Query: 127 MDLM------------------------------------------------------NR 186
              M                                                        
Sbjct: 730 ARYMADTFRDLRFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEE 789

Query: 187 VSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVEKLSRIATPLT 225
             FLG+ +    ++    K  A+  +  P TV + + FLG+  YYRRF+   S+IA P+ 
Sbjct: 790 TEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPIQ 849

[Close]

BLAST of Cmc10g0278821 vs. ExPASy TrEMBL
Match: A0A5A7SRV9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold218G00130 PE=4 SV=1)

HSP 1 Score: 443.0 bits (1138), Expect = 7.9e-121
Identity = 222/236 (94.07%), Postives = 223/236 (94.49%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 479 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 538

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDIPKTAFRSRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDED+PKTAFRSRYGHYEFIVMSFGLT
Sbjct: 539 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLT 598

Query: 121 NAPAVFMDLMNR---------VSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFL 180
           NAPAVFMDLMNR         VSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFL
Sbjct: 599 NAPAVFMDLMNRVFREFLDTFVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFL 658

Query: 181 GLAGYYRRFVEKLSRIATPLTQLTRKGAPFVWSKACEDSFQTLKQKLVTAPVLTVP 228
           GLAGYYRRFV   SRIATPLTQLTRKGAPFVWSKACEDSFQ LKQKLVTAPVLTVP
Sbjct: 659 GLAGYYRRFVGNFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVP 714

[Close]

BLAST of Cmc10g0278821 vs. ExPASy TrEMBL
Match: A0A5D3BPI1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G002120 PE=4 SV=1)

HSP 1 Score: 429.5 bits (1103), Expect = 9.0e-117
Identity = 224/283 (79.15%), Postives = 225/283 (79.51%), Query Frame = 0


Query: 1    MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
            MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 834  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 893

Query: 61   YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDIPKTAFRSRYGHYEFIVMSFGLT 120
            YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDED+PKTAFRSRYGHYEFIVMSFGLT
Sbjct: 894  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLT 953

Query: 121  NAPAVFMDLMNR------------------------------------------------ 180
            NAPAVFMDLMNR                                                
Sbjct: 954  NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS 1013

Query: 181  --------VSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVEKL 228
                    VSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVE  
Sbjct: 1014 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 1073

[Close]

BLAST of Cmc10g0278821 vs. ExPASy TrEMBL
Match: A0A5A7UY04 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold409G001070 PE=4 SV=1)

HSP 1 Score: 429.5 bits (1103), Expect = 9.0e-117
Identity = 224/283 (79.15%), Postives = 225/283 (79.51%), Query Frame = 0


Query: 1    MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
            MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 811  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 870

Query: 61   YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDIPKTAFRSRYGHYEFIVMSFGLT 120
            YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDED+PKTAFRSRYGHYEFIVMSFGLT
Sbjct: 871  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLT 930

Query: 121  NAPAVFMDLMNR------------------------------------------------ 180
            NAPAVFMDLMNR                                                
Sbjct: 931  NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRNNKLYAKFS 990

Query: 181  --------VSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVEKL 228
                    VSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVE  
Sbjct: 991  KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 1050

[Close]

BLAST of Cmc10g0278821 vs. ExPASy TrEMBL
Match: Q84KB0 (Pol protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 428.3 bits (1100), Expect = 2.0e-116
Identity = 223/283 (78.80%), Postives = 225/283 (79.51%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDIPKTAFRSRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDED+PKTAFRSRYGHY+FIVMSFGLT
Sbjct: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYQFIVMSFGLT 120

Query: 121 NAPAVFMDLMNR------------------------------------------------ 180
           NAPAVFMDLMNR                                                
Sbjct: 121 NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS 180

Query: 181 --------VSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVEKL 228
                   VSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVE  
Sbjct: 181 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 240

[Close]

BLAST of Cmc10g0278821 vs. ExPASy TrEMBL
Match: A0A5A7T190 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold379G001700 PE=4 SV=1)

HSP 1 Score: 427.6 bits (1098), Expect = 3.4e-116
Identity = 223/283 (78.80%), Postives = 224/283 (79.15%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 614 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 673

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDIPKTAFRSRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDED+PKTAFRSRYGHYEFIVMSFGLT
Sbjct: 674 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLT 733

Query: 121 NAPAVFMDLMNR------------------------------------------------ 180
           NAPAVFMDLMNR                                                
Sbjct: 734 NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFL 793

Query: 181 --------VSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVEKL 228
                   VSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVE  
Sbjct: 794 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 853

[Close]

BLAST of Cmc10g0278821 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 94.0 bits (232), Expect = 1.7e-19
Identity = 44/98 (44.90%), Postives = 65/98 (66.33%), Query Frame = 0


Query: 132 RVSFLG--HVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVEKLSRIAT 191
           ++++LG  H++S  GVS DPAK+EA+ GW  P   +E+R FLGL GYYRRFV+   +I  
Sbjct: 29  QIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKNTTELRGFLGLTGYYRRFVKNYGKIVR 88

Query: 192 PLTQLTRKGAPFVWSKACEDSFQTLKQKLVTAPVLTVP 228
           PLT+L +K +   W++    +F+ LK  + T PVL +P
Sbjct: 89  PLTELLKKNS-LKWTEMAALAFKALKGAVTTLPVLALP 125

The following BLAST results are available for this feature:

BLAST of Cmc10g0278821 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031895.1	1.6e-120	94.07	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0058399.1	1.9e-116	79.15	pol protein [Cucumis melo var. makuwa]	[more]
TYK01613.1	1.9e-116	79.15	pol protein [Cucumis melo var. makuwa]	[more]
AAO45752.1	4.2e-116	78.80	pol protein [Cucumis melo subsp. melo]	[more]
KAA0048687.1	7.1e-116	78.80	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc10g0278821 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	3.9e-40	32.86	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	5.1e-40	31.91	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
Q8I7P9	1.2e-38	30.82	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
Q7LHG5	6.8e-37	32.72	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q99315	8.9e-37	32.72	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc10g0278821 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SRV9	7.9e-121	94.07	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21...	[more]
A0A5D3BPI1	9.0e-117	79.15	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45...	[more]
A0A5A7UY04	9.0e-117	79.15	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold40...	[more]
Q84KB0	2.0e-116	78.80	Pol protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A5A7T190	3.4e-116	78.80	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37...	[more]

BLAST of Cmc10g0278821 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	1.7e-19	44.90	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 61..136 e-value: 1.6E-60 score: 206.0
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 150..232 e-value: 4.5E-30 score: 105.5
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 1..121 e-value: 1.6E-60 score: 206.0
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..227
None	No IPR available	PANTHER	PTHR24559:SF363	SUBFAMILY NOT NAMED	coord: 2..227
None	No IPR available	CDD	cd01647	RT_LTR	coord: 20..133 e-value: 2.08992E-64 score: 196.277
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 36..134 e-value: 4.7E-12 score: 45.9
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..227

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc10g0278821.1	Cmc10g0278821.1	mRNA