Cmc10g0278781 (gene) Melon (Charmono) v1.1

Overview
NameCmc10g0278781
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag-pol polyprotein
LocationCMiso1.1chr10: 15565248 .. 15566107 (-)
RNA-Seq ExpressionCmc10g0278781
SyntenyCmc10g0278781
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCATGGTAGGAGAACTTTCCTATTTTCTAGGTCTACAGATCAAACAGAGAAGTGAGGGTATATTTATATCTCAAGAGAAGTATGCCAAGAACGTGGTCAAAGAATTTGGTCTGGATCAGTGTCCACATAAAAGGACTCCAGCAACGACACACGTTAAAGTTACTAAAGATGTTAATGGTACAGTAGTAGATCACAAACTGTACAGGAGCATGATTGGAAGTCTTCTATATTTAATGACAAGCAGACCTGACATTGCCTATGTTGTTGGTATATGTGCTCGATTTCAGTCAGATCCTTGCATTTCTCAATTACATCTGTTAAACGGATTCTCAAATATGTACATGGGACGAGTGACTTTGGATTTTTGTATTCTTTTGACACAACCTCTACCATGGTTGGATATTGTGAGGCTAATTAGGCTGGTTCTACAGATGATAGGAAAAGCACTTTTGGAGGTTGTTTCTTTGTAGGAAACAATATTATATCATGGTTCAGTAAGAAACAGAATTGTGTATCATTGTCTACAGCTGAAGCTGAATATATATCAGCAAAAAGTGCTTGTACCCAAATAATTTGGATGAATAATATGTTACAGGAATATGGGTTTGCTCAAGAAACCATGACTTTATATTGTGATAATATGAGTGCCATTGACATATCTAGAAATCTAGTTCAATATAGTCGAACCAAACATATTAATATTAGGCATCATTTTATTCGTGAACTTGTTGAAAATAAAGTTATTAGACTTTATCATATTTGCTCGAACTTGCAATTAGCTGATATATTCACTAAGCCTCTAGATGCAAATACATTTGAATATTTACGTACTGGTTTAGGATTTTGTCGCATTTAA

mRNA sequence

ATGAGCATGGTAGGAGAACTTTCCTATTTTCTAGGTCTACAGATCAAACAGAGAAGTGAGGGTATATTTATATCTCAAGAGAAGTATGCCAAGAACGTGGTCAAAGAATTTGGTCTGGATCAGTGTCCACATAAAAGGACTCCAGCAACGACACACGTTAAAGTTACTAAAGATGTTAATGGTACAGTAGTAGATCACAAACTGTACAGGAGCATGATTGGAAGTCTTCTATATTTAATGACAAGCAGACCTGACATTGCCTATGTTGTTGATGATAGGAAAAGCACTTTTGGAGGTTGTTTCTTTGTAGGAAACAATATTATATCATGGTTCAGTAAGAAACAGAATTGTGTATCATTGTCTACAGCTGAAGCTGAATATATATCAGCAAAAAGTGCTTGTACCCAAATAATTTGGATGAATAATATGTTACAGGAATATGGGTTTGCTCAAGAAACCATGACTTTATATTGTGATAATATGAGTGCCATTGACATATCTAGAAATCTAGTTCAATATAGTCGAACCAAACATATTAATATTAGGCATCATTTTATTCGTGAACTTGTTGAAAATAAAGTTATTAGACTTTATCATATTTGCTCGAACTTGCAATTAGCTGATATATTCACTAAGCCTCTAGATGCAAATACATTTGAATATTTACGTACTGGTTTAGGATTTTGTCGCATTTAA

Coding sequence (CDS)

ATGAGCATGGTAGGAGAACTTTCCTATTTTCTAGGTCTACAGATCAAACAGAGAAGTGAGGGTATATTTATATCTCAAGAGAAGTATGCCAAGAACGTGGTCAAAGAATTTGGTCTGGATCAGTGTCCACATAAAAGGACTCCAGCAACGACACACGTTAAAGTTACTAAAGATGTTAATGGTACAGTAGTAGATCACAAACTGTACAGGAGCATGATTGGAAGTCTTCTATATTTAATGACAAGCAGACCTGACATTGCCTATGTTGTTGATGATAGGAAAAGCACTTTTGGAGGTTGTTTCTTTGTAGGAAACAATATTATATCATGGTTCAGTAAGAAACAGAATTGTGTATCATTGTCTACAGCTGAAGCTGAATATATATCAGCAAAAAGTGCTTGTACCCAAATAATTTGGATGAATAATATGTTACAGGAATATGGGTTTGCTCAAGAAACCATGACTTTATATTGTGATAATATGAGTGCCATTGACATATCTAGAAATCTAGTTCAATATAGTCGAACCAAACATATTAATATTAGGCATCATTTTATTCGTGAACTTGTTGAAAATAAAGTTATTAGACTTTATCATATTTGCTCGAACTTGCAATTAGCTGATATATTCACTAAGCCTCTAGATGCAAATACATTTGAATATTTACGTACTGGTTTAGGATTTTGTCGCATTTAA

Protein sequence

MSMVGELSYFLGLQIKQRSEGIFISQEKYAKNVVKEFGLDQCPHKRTPATTHVKVTKDVNGTVVDHKLYRSMIGSLLYLMTSRPDIAYVVDDRKSTFGGCFFVGNNIISWFSKKQNCVSLSTAEAEYISAKSACTQIIWMNNMLQEYGFAQETMTLYCDNMSAIDISRNLVQYSRTKHINIRHHFIRELVENKVIRLYHICSNLQLADIFTKPLDANTFEYLRTGLGFCRI
Homology
BLAST of Cmc10g0278781 vs. NCBI nr
Match: KAA0048308.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK10653.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 350.5 bits (898), Expect = 1.1e-92
Identity = 173/234 (73.93%), Postives = 195/234 (83.33%), Query Frame = 0

Query: 1   MSMVGELSYFLGLQIKQRSEGIFISQEKYAKNVVKEFGLDQCPHKRTPATTHVKVTKDVN 60
           MSMVGELS FL LQIKQRSEG+FISQEKYAKN+VK+FGLDQ  HK TPA THVK+T+D+N
Sbjct: 1   MSMVGELSCFLELQIKQRSEGLFISQEKYAKNIVKKFGLDQSQHKSTPAATHVKITQDIN 60

Query: 61  GTVVDHKLYRSMIGSLLYLMTSRPDIAYVV--------DDRKSTFGGCFFVGNNIISWFS 120
            T VDHKLYRSMIG+LLYL TSRPDIAY V        DDRKS   GCFF+GNN+ISWFS
Sbjct: 61  DTAVDHKLYRSMIGTLLYLTTSRPDIAYAVGIYWAGFTDDRKSASSGCFFLGNNLISWFS 120

Query: 121 KKQNCVSLSTAEAEYISAKSACTQIIWMNNMLQEYGFAQETMTLYCDNMSAIDISRNLVQ 180
           KKQN VSLSTAEAEYI+  S CTQ+IWM NML EY   Q+ MT+YCDNM+AIDIS+N +Q
Sbjct: 121 KKQNSVSLSTAEAEYIAVGSGCTQLIWMKNMLHEYEITQDVMTMYCDNMNAIDISKNPIQ 180

Query: 181 YSRTKHINIRHHFIRELVENKVIRLYHICSNLQLADIFTKPLDANTFEYLRTGL 227
            SRTK+I+IRHHFIREL+ENK+I L HI SN QLADIFTKPLDA TF++LR GL
Sbjct: 181 RSRTKYIDIRHHFIRELIENKIITLEHIRSNSQLADIFTKPLDATTFDHLRAGL 234

BLAST of Cmc10g0278781 vs. NCBI nr
Match: KAA0055610.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK24458.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 336.3 bits (861), Expect = 2.1e-88
Identity = 177/283 (62.54%), Postives = 201/283 (71.02%), Query Frame = 0

Query: 3   MVGELSYFLGLQIKQRSEGIFISQEKYAKNVVKEFGLDQCPHKRTPATTHVKVTKDVNGT 62
           MVGELS FLGLQIK++++GIFISQEKYAKN+VK+FGL+Q  +KRTP  THVK+TKD    
Sbjct: 1   MVGELSCFLGLQIKRKNDGIFISQEKYAKNMVKKFGLEQARNKRTPTATHVKLTKDTE-D 60

Query: 63  VVDHKLYRSMIGSLLYLMTSRPDIAYVV-------------------------------- 122
           V DHKLYRS++GSLLYL  SRP+IAYVV                                
Sbjct: 61  VEDHKLYRSIVGSLLYLTASRPNIAYVVGICAHYQADPRITHLEAVKRILKYVHGTSDFG 120

Query: 123 -----------------------DDRKSTFGGCFFVGNNIISWFSKKQNCVSLSTAEAEY 182
                                  DDRKST GGCFF+GNN+ISW SKKQNCVSLST EAEY
Sbjct: 121 MMYSYDTTPFLVGYCDADWAGSADDRKSTSGGCFFLGNNLISWLSKKQNCVSLSTTEAEY 180

Query: 183 ISAKSACTQIIWMNNMLQEYGFAQETMTLYCDNMSAIDISRNLVQYSRTKHINIRHHFIR 231
           I+A S CTQ+IWM NML EYGF Q+TMTLYCDN SAIDIS+N VQ+SRTKHI+IRHHFIR
Sbjct: 181 IAAGSGCTQLIWMKNMLHEYGFDQDTMTLYCDNTSAIDISKNPVQHSRTKHIDIRHHFIR 240

BLAST of Cmc10g0278781 vs. NCBI nr
Match: AAO73521.1 (gag-pol polyprotein [Glycine max])

HSP 1 Score: 309.7 bits (792), Expect = 2.1e-80
Identity = 158/284 (55.63%), Postives = 192/284 (67.61%), Query Frame = 0

Query: 1    MSMVGELSYFLGLQIKQRSEGIFISQEKYAKNVVKEFGLDQCPHKRTPATTHVKVTKDVN 60
            MS+VGEL+YFLGLQ+KQ  + IF+SQ +YAKN+VK+FG++   HKRTPA TH+K++KD  
Sbjct: 1286 MSLVGELTYFLGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEA 1345

Query: 61   GTVVDHKLYRSMIGSLLYLMTSRPDIAYVV------------------------------ 120
            GT VD  LYRSMIGSLLYL  SRPDI Y V                              
Sbjct: 1346 GTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLTQVKRILKYVNGTSD 1405

Query: 121  -------------------------DDRKSTFGGCFFVGNNIISWFSKKQNCVSLSTAEA 180
                                     DDRKST GGCF++GNN+ISWFSKKQNCVSLSTAEA
Sbjct: 1406 YGIMYCHCSNPMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEA 1465

Query: 181  EYISAKSACTQIIWMNNMLQEYGFAQETMTLYCDNMSAIDISRNLVQYSRTKHINIRHHF 230
            EYI+A S+C+Q++WM  ML+EY   Q+ MTLYCDNMSAI+IS+N VQ+SRTKHI+IRHH+
Sbjct: 1466 EYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHY 1525

BLAST of Cmc10g0278781 vs. NCBI nr
Match: AAO73527.1 (gag-pol polyprotein [Glycine max])

HSP 1 Score: 309.7 bits (792), Expect = 2.1e-80
Identity = 158/284 (55.63%), Postives = 192/284 (67.61%), Query Frame = 0

Query: 1    MSMVGELSYFLGLQIKQRSEGIFISQEKYAKNVVKEFGLDQCPHKRTPATTHVKVTKDVN 60
            MS+VGEL+YFLGLQ+KQ  + IF+SQ +YAKN+VK+FG++   HKRTPA TH+K++KD  
Sbjct: 1288 MSLVGELTYFLGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEA 1347

Query: 61   GTVVDHKLYRSMIGSLLYLMTSRPDIAYVV------------------------------ 120
            GT VD  LYRSMIGSLLYL  SRPDI Y V                              
Sbjct: 1348 GTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLTQVKRILKYVNGTSD 1407

Query: 121  -------------------------DDRKSTFGGCFFVGNNIISWFSKKQNCVSLSTAEA 180
                                     DDRKST GGCF++GNN+ISWFSKKQNCVSLSTAEA
Sbjct: 1408 YGIMYCHCSNPMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEA 1467

Query: 181  EYISAKSACTQIIWMNNMLQEYGFAQETMTLYCDNMSAIDISRNLVQYSRTKHINIRHHF 230
            EYI+A S+C+Q++WM  ML+EY   Q+ MTLYCDNMSAI+IS+N VQ+SRTKHI+IRHH+
Sbjct: 1468 EYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHY 1527

BLAST of Cmc10g0278781 vs. NCBI nr
Match: AAO73529.1 (gag-pol polyprotein [Glycine max])

HSP 1 Score: 309.7 bits (792), Expect = 2.1e-80
Identity = 159/284 (55.99%), Postives = 191/284 (67.25%), Query Frame = 0

Query: 1    MSMVGELSYFLGLQIKQRSEGIFISQEKYAKNVVKEFGLDQCPHKRTPATTHVKVTKDVN 60
            MS+VGEL+YFLGLQ+KQ  + IF+SQ KYAKN+VK+FG++   HKRTPA TH+K++KD  
Sbjct: 1289 MSLVGELTYFLGLQVKQMEDSIFLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSKDEA 1348

Query: 61   GTVVDHKLYRSMIGSLLYLMTSRPDIAYVV------------------------------ 120
            GT VD  LYRSMIGSLLYL  SRPDI Y V                              
Sbjct: 1349 GTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLNQVKRILKYVNGTSD 1408

Query: 121  -------------------------DDRKSTFGGCFFVGNNIISWFSKKQNCVSLSTAEA 180
                                     DDRKST GGCF++GNN+ISWFSKKQNCVSLSTAEA
Sbjct: 1409 YGIMYCHCSGSMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEA 1468

Query: 181  EYISAKSACTQIIWMNNMLQEYGFAQETMTLYCDNMSAIDISRNLVQYSRTKHINIRHHF 230
            EYI+A S+C+Q++WM  ML+EY   Q+ MTLYCDNMSAI+IS+N VQ+SRTKHI+IRHH+
Sbjct: 1469 EYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHY 1528

BLAST of Cmc10g0278781 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.3e-35
Identity = 94/290 (32.41%), Postives = 146/290 (50.34%), Query Frame = 0

Query: 1    MSMVGELSYFLGLQI--KQRSEGIFISQEKYAKNVVKEFGLDQCPHKRTPATTHVKVTKD 60
            M  +G     LG++I  ++ S  +++SQEKY + V++ F +       TP   H+K++K 
Sbjct: 1035 MKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKK 1094

Query: 61   VNGTVVDHK------LYRSMIGSLLYLMT-SRPDIAYVV--------------------- 120
            +  T V+ K       Y S +GSL+Y M  +RPDIA+ V                     
Sbjct: 1095 MCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWI 1154

Query: 121  ---------------------------------DDRKSTFGGCFFVGNNIISWFSKKQNC 180
                                             D+RKS+ G  F      ISW SK Q C
Sbjct: 1155 LRYLRGTTGDCLCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKC 1214

Query: 181  VSLSTAEAEYISAKSACTQIIWMNNMLQEYGFAQETMTLYCDNMSAIDISRNLVQYSRTK 228
            V+LST EAEYI+A     ++IW+   LQE G  Q+   +YCD+ SAID+S+N + ++RTK
Sbjct: 1215 VALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKEYVVYCDSQSAIDLSKNSMYHARTK 1274

BLAST of Cmc10g0278781 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 5.7e-28
Identity = 83/282 (29.43%), Postives = 128/282 (45.39%), Query Frame = 0

Query: 6    ELSYFLGLQIKQRSEGIFISQEKYAKNVVKEFGLDQCPHKRTPATTHVKVTKDVNGTVVD 65
            EL YFLG++ K+   G+ +SQ +Y  +++    +       TP     K++      + D
Sbjct: 1182 ELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTD 1241

Query: 66   HKLYRSMIGSLLYLMTSRPDIAYVV----------------------------------- 125
               YR ++GSL YL  +RPDI+Y V                                   
Sbjct: 1242 PTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFL 1301

Query: 126  --------------------DDRKSTFGGCFFVGNNIISWFSKKQNCVSLSTAEAEYISA 185
                                DD  ST G   ++G++ ISW SKKQ  V  S+ EAEY S 
Sbjct: 1302 KKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSV 1361

Query: 186  KSACTQIIWMNNMLQEYGF-AQETMTLYCDNMSAIDISRNLVQYSRTKHINIRHHFIREL 232
             +  +++ W+ ++L E G        +YCDN+ A  +  N V +SR KHI I +HFIR  
Sbjct: 1362 ANTSSEMQWICSLLTELGIRLTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQ 1421

BLAST of Cmc10g0278781 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 5.7e-28
Identity = 81/282 (28.72%), Postives = 129/282 (45.74%), Query Frame = 0

Query: 6    ELSYFLGLQIKQRSEGIFISQEKYAKNVVKEFGLDQCPHKRTPATTHVKVTKDVNGTVVD 65
            +L YFLG++ K+  +G+ +SQ +Y  +++    +       TP  T  K+T      + D
Sbjct: 1165 DLHYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPD 1224

Query: 66   HKLYRSMIGSLLYLMTSRPDIAYVV----------------------------------- 125
               YR ++GSL YL  +RPD++Y V                                   
Sbjct: 1225 PTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFL 1284

Query: 126  --------------------DDRKSTFGGCFFVGNNIISWFSKKQNCVSLSTAEAEYISA 185
                                DD  ST G   ++G++ ISW SKKQ  V  S+ EAEY S 
Sbjct: 1285 KKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSV 1344

Query: 186  KSACTQIIWMNNMLQEYGF-AQETMTLYCDNMSAIDISRNLVQYSRTKHINIRHHFIREL 232
             +  +++ W+ ++L E G        +YCDN+ A  +  N V +SR KHI + +HFIR  
Sbjct: 1345 ANTSSELQWICSLLTELGIQLSHPPVIYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQ 1404

BLAST of Cmc10g0278781 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 124.0 bits (310), Expect = 2.2e-27
Identity = 86/287 (29.97%), Postives = 137/287 (47.74%), Query Frame = 0

Query: 1    MSMVGELSYFLGLQIKQRSEGIFISQEKYAKNVVKEFGLDQCPHKRTPATTHVKVTKDVN 60
            M+ + E+ +F+G++I+ + + I++SQ  Y K ++ +F ++ C    TP  + +   + +N
Sbjct: 1114 MTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINY-ELLN 1173

Query: 61   GTVVDHKLYRSMIGSLLYLM-TSRPDIAYVVD---------------------------- 120
                 +   RS+IG L+Y+M  +RPD+   V+                            
Sbjct: 1174 SDEDCNTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTI 1233

Query: 121  -----------------------------DRKSTFGGCFFVGN-NIISWFSKKQNCVSLS 180
                                         DRKST G  F + + N+I W +K+QN V+ S
Sbjct: 1234 DMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAAS 1293

Query: 181  TAEAEYISAKSACTQIIWMNNMLQEYGFAQET-MTLYCDNMSAIDISRNLVQYSRTKHIN 228
            + EAEY++   A  + +W+  +L       E  + +Y DN   I I+ N   + R KHI+
Sbjct: 1294 STEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHID 1353

BLAST of Cmc10g0278781 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.2e-14
Identity = 56/195 (28.72%), Postives = 83/195 (42.56%), Query Frame = 0

Query: 1   MSMVGELSYFLGLQIKQRSEGIFISQEKYAKNVVKEFGLDQCPHKRTPATTHVKVTKDVN 60
           M  +G + YFLG+QIK    G+F+SQ KYA+ ++   G+  C    TP    +K+   V+
Sbjct: 33  MKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLP--LKLNSSVS 92

Query: 61  -GTVVDHKLYRSMIGSLLYLMTSRPDIAYVVD---------------------------- 120
                D   +RS++G+L YL  +RPDI+Y V+                            
Sbjct: 93  TAKYPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTI 152

Query: 121 ---------------------------DRKSTFGGCFFVGNNIISWFSKKQNCVSLSTAE 140
                                       R+ST G C F+G NIISW +K+Q  VS S+ E
Sbjct: 153 FHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTE 212

BLAST of Cmc10g0278781 vs. ExPASy TrEMBL
Match: A0A5A7TZB3 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25G00150 PE=4 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 5.3e-93
Identity = 173/234 (73.93%), Postives = 195/234 (83.33%), Query Frame = 0

Query: 1   MSMVGELSYFLGLQIKQRSEGIFISQEKYAKNVVKEFGLDQCPHKRTPATTHVKVTKDVN 60
           MSMVGELS FL LQIKQRSEG+FISQEKYAKN+VK+FGLDQ  HK TPA THVK+T+D+N
Sbjct: 1   MSMVGELSCFLELQIKQRSEGLFISQEKYAKNIVKKFGLDQSQHKSTPAATHVKITQDIN 60

Query: 61  GTVVDHKLYRSMIGSLLYLMTSRPDIAYVV--------DDRKSTFGGCFFVGNNIISWFS 120
            T VDHKLYRSMIG+LLYL TSRPDIAY V        DDRKS   GCFF+GNN+ISWFS
Sbjct: 61  DTAVDHKLYRSMIGTLLYLTTSRPDIAYAVGIYWAGFTDDRKSASSGCFFLGNNLISWFS 120

Query: 121 KKQNCVSLSTAEAEYISAKSACTQIIWMNNMLQEYGFAQETMTLYCDNMSAIDISRNLVQ 180
           KKQN VSLSTAEAEYI+  S CTQ+IWM NML EY   Q+ MT+YCDNM+AIDIS+N +Q
Sbjct: 121 KKQNSVSLSTAEAEYIAVGSGCTQLIWMKNMLHEYEITQDVMTMYCDNMNAIDISKNPIQ 180

Query: 181 YSRTKHINIRHHFIRELVENKVIRLYHICSNLQLADIFTKPLDANTFEYLRTGL 227
            SRTK+I+IRHHFIREL+ENK+I L HI SN QLADIFTKPLDA TF++LR GL
Sbjct: 181 RSRTKYIDIRHHFIRELIENKIITLEHIRSNSQLADIFTKPLDATTFDHLRAGL 234

BLAST of Cmc10g0278781 vs. ExPASy TrEMBL
Match: A0A5D3DLL1 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold717G00150 PE=4 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 1.0e-88
Identity = 177/283 (62.54%), Postives = 201/283 (71.02%), Query Frame = 0

Query: 3   MVGELSYFLGLQIKQRSEGIFISQEKYAKNVVKEFGLDQCPHKRTPATTHVKVTKDVNGT 62
           MVGELS FLGLQIK++++GIFISQEKYAKN+VK+FGL+Q  +KRTP  THVK+TKD    
Sbjct: 1   MVGELSCFLGLQIKRKNDGIFISQEKYAKNMVKKFGLEQARNKRTPTATHVKLTKDTE-D 60

Query: 63  VVDHKLYRSMIGSLLYLMTSRPDIAYVV-------------------------------- 122
           V DHKLYRS++GSLLYL  SRP+IAYVV                                
Sbjct: 61  VEDHKLYRSIVGSLLYLTASRPNIAYVVGICAHYQADPRITHLEAVKRILKYVHGTSDFG 120

Query: 123 -----------------------DDRKSTFGGCFFVGNNIISWFSKKQNCVSLSTAEAEY 182
                                  DDRKST GGCFF+GNN+ISW SKKQNCVSLST EAEY
Sbjct: 121 MMYSYDTTPFLVGYCDADWAGSADDRKSTSGGCFFLGNNLISWLSKKQNCVSLSTTEAEY 180

Query: 183 ISAKSACTQIIWMNNMLQEYGFAQETMTLYCDNMSAIDISRNLVQYSRTKHINIRHHFIR 231
           I+A S CTQ+IWM NML EYGF Q+TMTLYCDN SAIDIS+N VQ+SRTKHI+IRHHFIR
Sbjct: 181 IAAGSGCTQLIWMKNMLHEYGFDQDTMTLYCDNTSAIDISKNPVQHSRTKHIDIRHHFIR 240

BLAST of Cmc10g0278781 vs. ExPASy TrEMBL
Match: O65147 (Gag-pol polyprotein OS=Glycine max OX=3847 GN=pol PE=4 SV=2)

HSP 1 Score: 309.7 bits (792), Expect = 1.0e-80
Identity = 158/284 (55.63%), Postives = 191/284 (67.25%), Query Frame = 0

Query: 1    MSMVGELSYFLGLQIKQRSEGIFISQEKYAKNVVKEFGLDQCPHKRTPATTHVKVTKDVN 60
            MS+VGEL+YFLGLQ+KQ  + IF+SQ KYAKN+VK+FG++   HKRTPA TH+K++KD  
Sbjct: 1262 MSLVGELTYFLGLQVKQMEDSIFLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSKDEA 1321

Query: 61   GTVVDHKLYRSMIGSLLYLMTSRPDIAYV------------------------------- 120
            GT VD  LYRSMIGSLLYL  SRPDI Y                                
Sbjct: 1322 GTSVDQSLYRSMIGSLLYLTASRPDITYAVGGCARYQANPKISHLNQVKRILKYVNGTSD 1381

Query: 121  ------------------------VDDRKSTFGGCFFVGNNIISWFSKKQNCVSLSTAEA 180
                                    VDDRKSTFGGCF++G N ISWFSKKQNCVSLSTAEA
Sbjct: 1382 YGIMYCHCSDSMLVGYCDADWAGSVDDRKSTFGGCFYLGTNFISWFSKKQNCVSLSTAEA 1441

Query: 181  EYISAKSACTQIIWMNNMLQEYGFAQETMTLYCDNMSAIDISRNLVQYSRTKHINIRHHF 230
            EYI+A S+C+Q++WM  ML+EY   Q+ MTLYCDN+SAI+IS+N VQ+SRTKHI+IRHH+
Sbjct: 1442 EYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNLSAINISKNPVQHSRTKHIDIRHHY 1501

BLAST of Cmc10g0278781 vs. ExPASy TrEMBL
Match: Q84VI4 (Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 1.0e-80
Identity = 158/284 (55.63%), Postives = 192/284 (67.61%), Query Frame = 0

Query: 1    MSMVGELSYFLGLQIKQRSEGIFISQEKYAKNVVKEFGLDQCPHKRTPATTHVKVTKDVN 60
            MS+VGEL+YFLGLQ+KQ  + IF+SQ +YAKN+VK+FG++   HKRTPA TH+K++KD  
Sbjct: 1286 MSLVGELTYFLGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEA 1345

Query: 61   GTVVDHKLYRSMIGSLLYLMTSRPDIAYVV------------------------------ 120
            GT VD  LYRSMIGSLLYL  SRPDI Y V                              
Sbjct: 1346 GTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLTQVKRILKYVNGTSD 1405

Query: 121  -------------------------DDRKSTFGGCFFVGNNIISWFSKKQNCVSLSTAEA 180
                                     DDRKST GGCF++GNN+ISWFSKKQNCVSLSTAEA
Sbjct: 1406 YGIMYCHCSNPMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEA 1465

Query: 181  EYISAKSACTQIIWMNNMLQEYGFAQETMTLYCDNMSAIDISRNLVQYSRTKHINIRHHF 230
            EYI+A S+C+Q++WM  ML+EY   Q+ MTLYCDNMSAI+IS+N VQ+SRTKHI+IRHH+
Sbjct: 1466 EYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHY 1525

BLAST of Cmc10g0278781 vs. ExPASy TrEMBL
Match: Q84VH6 (Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 1.0e-80
Identity = 159/284 (55.99%), Postives = 191/284 (67.25%), Query Frame = 0

Query: 1    MSMVGELSYFLGLQIKQRSEGIFISQEKYAKNVVKEFGLDQCPHKRTPATTHVKVTKDVN 60
            MS+VGEL+YFLGLQ+KQ  + IF+SQ KYAKN+VK+FG++   HKRTPA TH+K++KD  
Sbjct: 1289 MSLVGELTYFLGLQVKQMEDSIFLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSKDEA 1348

Query: 61   GTVVDHKLYRSMIGSLLYLMTSRPDIAYVV------------------------------ 120
            GT VD  LYRSMIGSLLYL  SRPDI Y V                              
Sbjct: 1349 GTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLNQVKRILKYVNGTSD 1408

Query: 121  -------------------------DDRKSTFGGCFFVGNNIISWFSKKQNCVSLSTAEA 180
                                     DDRKST GGCF++GNN+ISWFSKKQNCVSLSTAEA
Sbjct: 1409 YGIMYCHCSGSMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEA 1468

Query: 181  EYISAKSACTQIIWMNNMLQEYGFAQETMTLYCDNMSAIDISRNLVQYSRTKHINIRHHF 230
            EYI+A S+C+Q++WM  ML+EY   Q+ MTLYCDNMSAI+IS+N VQ+SRTKHI+IRHH+
Sbjct: 1469 EYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHY 1528

BLAST of Cmc10g0278781 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 119.4 bits (298), Expect = 3.8e-27
Identity = 80/241 (33.20%), Postives = 109/241 (45.23%), Query Frame = 0

Query: 4   VGELSYFLGLQIKQRSEGIFISQEKYAKNVVKEFGLDQCPHKRTPATTHVKVTKDVNGTV 63
           +G L YFLGL+I + + GI I Q KYA +++ E GL  C     P    V  +    G  
Sbjct: 313 LGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDF 372

Query: 64  VDHKLYRSMIGSLLYLMTSRPDIAYVV--------------------------------- 123
           VD K YR +IG L+YL  +R DI++ V                                 
Sbjct: 373 VDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGL 432

Query: 124 ----------------------DDRKSTFGGCFFVGNNIISWFSKKQNCVSLSTAEAEYI 183
                                 D R+ST G C F+G ++ISW SKKQ  VS S+AEAEY 
Sbjct: 433 FYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYR 492

Query: 184 SAKSACTQIIWMNNMLQEYGFAQETMT-LYCDNMSAIDISRNLVQYSRTKHINIRHHFIR 189
           +   A  +++W+    +E        T L+CDN +AI I+ N V + RTKHI    H +R
Sbjct: 493 ALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVR 552

BLAST of Cmc10g0278781 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 81.6 bits (200), Expect = 8.8e-16
Identity = 56/195 (28.72%), Postives = 83/195 (42.56%), Query Frame = 0

Query: 1   MSMVGELSYFLGLQIKQRSEGIFISQEKYAKNVVKEFGLDQCPHKRTPATTHVKVTKDVN 60
           M  +G + YFLG+QIK    G+F+SQ KYA+ ++   G+  C    TP    +K+   V+
Sbjct: 33  MKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLP--LKLNSSVS 92

Query: 61  -GTVVDHKLYRSMIGSLLYLMTSRPDIAYVVD---------------------------- 120
                D   +RS++G+L YL  +RPDI+Y V+                            
Sbjct: 93  TAKYPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTI 152

Query: 121 ---------------------------DRKSTFGGCFFVGNNIISWFSKKQNCVSLSTAE 140
                                       R+ST G C F+G NIISW +K+Q  VS S+ E
Sbjct: 153 FHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTE 212

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0048308.11.1e-9273.93gag-pol polyprotein [Cucumis melo var. makuwa] >TYK10653.1 gag-pol polyprotein [... [more]
KAA0055610.12.1e-8862.54gag-pol polyprotein [Cucumis melo var. makuwa] >TYK24458.1 gag-pol polyprotein [... [more]
AAO73521.12.1e-8055.63gag-pol polyprotein [Glycine max][more]
AAO73527.12.1e-8055.63gag-pol polyprotein [Glycine max][more]
AAO73529.12.1e-8055.99gag-pol polyprotein [Glycine max][more]
Match NameE-valueIdentityDescription
P109781.3e-3532.41Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
Q94HW25.7e-2829.43Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Q9ZT945.7e-2828.72Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
P041462.2e-2729.97Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
P925191.2e-1428.72Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ... [more]
Match NameE-valueIdentityDescription
A0A5A7TZB35.3e-9373.93Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25G0... [more]
A0A5D3DLL11.0e-8862.54Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold717G... [more]
O651471.0e-8055.63Gag-pol polyprotein OS=Glycine max OX=3847 GN=pol PE=4 SV=2[more]
Q84VI41.0e-8055.63Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1[more]
Q84VH61.0e-8055.99Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G23160.13.8e-2733.20cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
ATMG00810.18.8e-1628.72DNA/RNA polymerases superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439:SF355CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8coord: 90..229
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 90..229
NoneNo IPR availableCDDcd09272RNase_HI_RT_Ty1coord: 90..214
e-value: 2.60945E-67
score: 201.928
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 6..182

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc10g0278781.1Cmc10g0278781.1mRNA