Cmc10g0278341 (gene) Melon (Charmono) v1.1

Overview
NameCmc10g0278341
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
LocationCMiso1.1chr10: 14482671 .. 14483192 (+)
RNA-Seq ExpressionCmc10g0278341
SyntenyCmc10g0278341
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGATTTTGGTAAGACAAAATTTTGCCTTGACTTACAAATCGAGTATTTAGCCAATGGAATTTTTATTCATCAATTGACATATACAGAAAAGATTTTAAAAAGATTCTACATGGACAAAGCACACCCATTGAACATTCCAATGGTGGTTCGATCTTTAGATGTAAAAAAGGATATCTTTCGACCTCGAGAAGATAATAAAGAATTACTTGGTCCTGAAGTACCGTACCTTAGTGCAATAGGTGCACTAATGTATCTTGCTAATAACATAAGACCAGATATAGTATTTTCAGTAAATTTGTTAGCAAGATATAGTTCTTCTCCAACAAAAAAACATTGGAATGGAGTTAAGCATGTACTTCATTATCTTCGAGGGACAATTGATATGGATTTGTTTTATTCAAATAAATCAAACTTTGATCTAGTTGGTTATGTGGATGCTGGATATTTATCTGATCCACACAAATCAAGATCTCAAACAGGTTATCTGTTTACATGTGGAGGAACTGGTATATCTTGA

mRNA sequence

ATGAAAGATTTTGGTAAGACAAAATTTTGCCTTGACTTACAAATCGAGTATTTAGCCAATGGAATTTTTATTCATCAATTGACATATACAGAAAAGATTTTAAAAAGATTCTACATGGACAAAGCACACCCATTGAACATTCCAATGGTGGTTCGATCTTTAGATGTAAAAAAGGATATCTTTCGACCTCGAGAAGATAATAAAGAATTACTTGGTCCTGAAGTACCGTACCTTAGTGCAATAGGTGCACTAATGTATCTTGCTAATAACATAAGACCAGATATAGTATTTTCAGTAAATTTGTTAGCAAGATATAGTTCTTCTCCAACAAAAAAACATTGGAATGGAGTTAAGCATGTACTTCATTATCTTCGAGGGACAATTGATATGGATTTGTTTTATTCAAATAAATCAAACTTTGATCTAGTTGGTTATGTGGATGCTGGATATTTATCTGATCCACACAAATCAAGATCTCAAACAGGTTATCTGTTTACATGTGGAGGAACTGGTATATCTTGA

Coding sequence (CDS)

ATGAAAGATTTTGGTAAGACAAAATTTTGCCTTGACTTACAAATCGAGTATTTAGCCAATGGAATTTTTATTCATCAATTGACATATACAGAAAAGATTTTAAAAAGATTCTACATGGACAAAGCACACCCATTGAACATTCCAATGGTGGTTCGATCTTTAGATGTAAAAAAGGATATCTTTCGACCTCGAGAAGATAATAAAGAATTACTTGGTCCTGAAGTACCGTACCTTAGTGCAATAGGTGCACTAATGTATCTTGCTAATAACATAAGACCAGATATAGTATTTTCAGTAAATTTGTTAGCAAGATATAGTTCTTCTCCAACAAAAAAACATTGGAATGGAGTTAAGCATGTACTTCATTATCTTCGAGGGACAATTGATATGGATTTGTTTTATTCAAATAAATCAAACTTTGATCTAGTTGGTTATGTGGATGCTGGATATTTATCTGATCCACACAAATCAAGATCTCAAACAGGTTATCTGTTTACATGTGGAGGAACTGGTATATCTTGA

Protein sequence

MKDFGKTKFCLDLQIEYLANGIFIHQLTYTEKILKRFYMDKAHPLNIPMVVRSLDVKKDIFRPREDNKELLGPEVPYLSAIGALMYLANNIRPDIVFSVNLLARYSSSPTKKHWNGVKHVLHYLRGTIDMDLFYSNKSNFDLVGYVDAGYLSDPHKSRSQTGYLFTCGGTGIS
Homology
BLAST of Cmc10g0278341 vs. NCBI nr
Match: AQY61299.1 (Pol [Coffea canephora])

HSP 1 Score: 287.3 bits (734), Expect = 8.5e-74
Identity = 133/173 (76.88%), Postives = 151/173 (87.28%), Query Frame = 0

Query: 1    MKDFGKTKFCLDLQIEYLANGIFIHQLTYTEKILKRFYMDKAHPLNIPMVVRSLDVKKDI 60
            +KDFGKTKFCL LQIE+L +GIF+HQ  YT K+LKRFYMDKAH L+ PMVVRSLD  KD 
Sbjct: 853  IKDFGKTKFCLGLQIEHLKSGIFVHQTAYTRKVLKRFYMDKAHTLSTPMVVRSLDPNKDP 912

Query: 61   FRPREDNKELLGPEVPYLSAIGALMYLANNIRPDIVFSVNLLARYSSSPTKKHWNGVKHV 120
            FRPRE+NKE+LGPEVPYLSAIGALMYLAN  RPDI F+VNLLAR+SSSPT++HWNG+KH+
Sbjct: 913  FRPREENKEILGPEVPYLSAIGALMYLANCTRPDISFAVNLLARFSSSPTRRHWNGIKHI 972

Query: 121  LHYLRGTIDMDLFYSNKSNFDLVGYVDAGYLSDPHKSRSQTGYLFTCGGTGIS 174
              YL+GTID+ LFYSNKS  +LVGY D GYLSDPHK+RSQTGYLFT GGT IS
Sbjct: 973  FRYLQGTIDLGLFYSNKSKPELVGYADTGYLSDPHKARSQTGYLFTYGGTAIS 1025

BLAST of Cmc10g0278341 vs. NCBI nr
Match: AQY61295.1 (Pol [Coffea arabica])

HSP 1 Score: 287.0 bits (733), Expect = 1.1e-73
Identity = 133/173 (76.88%), Postives = 151/173 (87.28%), Query Frame = 0

Query: 1    MKDFGKTKFCLDLQIEYLANGIFIHQLTYTEKILKRFYMDKAHPLNIPMVVRSLDVKKDI 60
            +KDFGKTKFCL LQIE+L  GIF+HQ  YT K+LKRFYMDKAH L+ PMVVRSLD  KD 
Sbjct: 853  IKDFGKTKFCLGLQIEHLKGGIFVHQTAYTRKVLKRFYMDKAHTLSTPMVVRSLDPNKDP 912

Query: 61   FRPREDNKELLGPEVPYLSAIGALMYLANNIRPDIVFSVNLLARYSSSPTKKHWNGVKHV 120
            FRPRE+N+E+LGPEVPYLSAIGALMYLAN  RPDI F+VNLLAR+SSSPT++HWNG+KH+
Sbjct: 913  FRPREENEEILGPEVPYLSAIGALMYLANCTRPDISFAVNLLARFSSSPTRRHWNGIKHI 972

Query: 121  LHYLRGTIDMDLFYSNKSNFDLVGYVDAGYLSDPHKSRSQTGYLFTCGGTGIS 174
              YL+GTID+ LFYSNKS  +LVGY DAGYLSDPHK+RSQTGYLFT GGT IS
Sbjct: 973  FRYLQGTIDLGLFYSNKSKPELVGYADAGYLSDPHKARSQTGYLFTYGGTAIS 1025

BLAST of Cmc10g0278341 vs. NCBI nr
Match: AQY61297.1 (Pol [Coffea canephora])

HSP 1 Score: 285.0 bits (728), Expect = 4.2e-73
Identity = 132/173 (76.30%), Postives = 151/173 (87.28%), Query Frame = 0

Query: 1   MKDFGKTKFCLDLQIEYLANGIFIHQLTYTEKILKRFYMDKAHPLNIPMVVRSLDVKKDI 60
           +KDFGKTKFCL LQIE+L  GIF+HQ  YT K+LKRFYMDKAH L+ PMVVRSLD  KD 
Sbjct: 738 IKDFGKTKFCLGLQIEHLKGGIFVHQTAYTRKVLKRFYMDKAHTLSTPMVVRSLDPNKDP 797

Query: 61  FRPREDNKELLGPEVPYLSAIGALMYLANNIRPDIVFSVNLLARYSSSPTKKHWNGVKHV 120
           FRPRE+N+E+LGPEVPYLSAIGALMYLAN  RPDI F+VNLLAR+SSSPT++HWNG+KH+
Sbjct: 798 FRPREENEEILGPEVPYLSAIGALMYLANCTRPDISFAVNLLARFSSSPTRRHWNGIKHI 857

Query: 121 LHYLRGTIDMDLFYSNKSNFDLVGYVDAGYLSDPHKSRSQTGYLFTCGGTGIS 174
             YL+GTID+ LFYSNKS  +LVGY DAGYLS+PHK+RSQTGYLFT GGT IS
Sbjct: 858 FRYLQGTIDLGLFYSNKSKPELVGYTDAGYLSNPHKARSQTGYLFTYGGTAIS 910

BLAST of Cmc10g0278341 vs. NCBI nr
Match: AQY61300.1 (Pol [Coffea eugenioides])

HSP 1 Score: 284.3 bits (726), Expect = 7.2e-73
Identity = 132/173 (76.30%), Postives = 150/173 (86.71%), Query Frame = 0

Query: 1    MKDFGKTKFCLDLQIEYLANGIFIHQLTYTEKILKRFYMDKAHPLNIPMVVRSLDVKKDI 60
            +KDFGKTKFCL LQIE+L  GIF+HQ  YT K+LKRFYMDKAH L+ PMVVRSLD  KD 
Sbjct: 853  IKDFGKTKFCLGLQIEHLKGGIFVHQTAYTLKVLKRFYMDKAHTLSTPMVVRSLDPNKDP 912

Query: 61   FRPREDNKELLGPEVPYLSAIGALMYLANNIRPDIVFSVNLLARYSSSPTKKHWNGVKHV 120
            FRPRE+N+E+LGPEVPYLSAIG LMYLAN  RPDI F+VNLLAR+SSSPT++HWNG+KH+
Sbjct: 913  FRPREENEEILGPEVPYLSAIGVLMYLANCTRPDISFAVNLLARFSSSPTRRHWNGIKHI 972

Query: 121  LHYLRGTIDMDLFYSNKSNFDLVGYVDAGYLSDPHKSRSQTGYLFTCGGTGIS 174
              YL+GTID+ LFYSNKS  +LVGY DAGYLSDPHK+RSQTGYLFT GGT IS
Sbjct: 973  FRYLQGTIDLGLFYSNKSKPELVGYADAGYLSDPHKARSQTGYLFTYGGTAIS 1025

BLAST of Cmc10g0278341 vs. NCBI nr
Match: RVW42583.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 283.5 bits (724), Expect = 1.2e-72
Identity = 131/173 (75.72%), Postives = 147/173 (84.97%), Query Frame = 0

Query: 1   MKDFGKTKFCLDLQIEYLANGIFIHQLTYTEKILKRFYMDKAHPLNIPMVVRSLDVKKDI 60
           MKD GKTKFCL LQIE+  NG+ +HQ TY +K+LKRFYMDKAHPL+ PMVVRSLDVKKD 
Sbjct: 439 MKDLGKTKFCLGLQIEHFPNGVLVHQSTYIKKVLKRFYMDKAHPLSSPMVVRSLDVKKDP 498

Query: 61  FRPREDNKELLGPEVPYLSAIGALMYLANNIRPDIVFSVNLLARYSSSPTKKHWNGVKHV 120
           FRP E ++ELLGPEVPYLSAIGALMYLAN  RPDI FSVNLLARYSS+PT++HWNG+KH+
Sbjct: 499 FRPCEKDEELLGPEVPYLSAIGALMYLANCTRPDIAFSVNLLARYSSAPTRRHWNGIKHI 558

Query: 121 LHYLRGTIDMDLFYSNKSNFDLVGYVDAGYLSDPHKSRSQTGYLFTCGGTGIS 174
           L YLRGT DM LFYS +S   L+GY DAGYLSDPHK RSQTGY+F C GT IS
Sbjct: 559 LRYLRGTTDMSLFYSRESKQQLLGYADAGYLSDPHKGRSQTGYVFNCNGTAIS 611

BLAST of Cmc10g0278341 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.2e-22
Identity = 65/175 (37.14%), Postives = 95/175 (54.29%), Query Frame = 0

Query: 1    MKDFGKTKFCLDLQI--EYLANGIFIHQLTYTEKILKRFYMDKAHPLNIPMVVRSLDVKK 60
            MKD G  +  L ++I  E  +  +++ Q  Y E++L+RF M  A P++ P+    L + K
Sbjct: 1035 MKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPL-AGHLKLSK 1094

Query: 61   DIFRPREDNKELLGPEVPYLSAIGALMYLANNIRPDIVFSVNLLARYSSSPTKKHWNGVK 120
             +     + K  +  +VPY SA+G+LMY     RPDI  +V +++R+  +P K+HW  VK
Sbjct: 1095 KMCPTTVEEKGNMA-KVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVK 1154

Query: 121  HVLHYLRGTIDMDLFYSNKSNFDLVGYVDAGYLSDPHKSRSQTGYLFTCGGTGIS 174
             +L YLRGT   D      S+  L GY DA    D    +S TGYLFT  G  IS
Sbjct: 1155 WILRYLRGTTG-DCLCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAIS 1206

BLAST of Cmc10g0278341 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 106.3 bits (264), Expect = 3.5e-22
Identity = 59/171 (34.50%), Postives = 90/171 (52.63%), Query Frame = 0

Query: 1    MKDFGKTKFCLDLQIEYLANGIFIHQLTYTEKILKRFYMDKAHPLNIPMVVRSLDVKKDI 60
            M D  + K  + ++IE   + I++ Q  Y +KIL +F M+  + ++ P+           
Sbjct: 1114 MTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPL----------- 1173

Query: 61   FRPREDNKELLGPE----VPYLSAIGALMYLANNIRPDIVFSVNLLARYSSSPTKKHWNG 120
              P + N ELL  +     P  S IG LMY+    RPD+  +VN+L+RYSS    + W  
Sbjct: 1174 --PSKINYELLNSDEDCNTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQN 1233

Query: 121  VKHVLHYLRGTIDMDLFYSNKSNFD--LVGYVDAGYLSDPHKSRSQTGYLF 166
            +K VL YL+GTIDM L +     F+  ++GYVD+ +       +S TGYLF
Sbjct: 1234 LKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLF 1271

BLAST of Cmc10g0278341 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.7e-16
Identity = 42/99 (42.42%), Postives = 58/99 (58.59%), Query Frame = 0

Query: 75  VPYLSAIGALMYLANNIRPDIVFSVNLLARYSSSPTKKHWNGVKHVLHYLRGTIDMDLFY 134
           VPYLSA+GA+MYL    RPD+  +V +L++++S P   HW  +K VL YL+ T    L +
Sbjct: 4   VPYLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYGLEF 63

Query: 135 SNKSNFDLVGYVDAGYLSDPHKSRSQTGYLFTCGGTGIS 174
           +      LVGY DA +  D    RS +GYLF   G  +S
Sbjct: 64  TRAGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVS 102

BLAST of Cmc10g0278341 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 7.1e-15
Identity = 52/173 (30.06%), Postives = 77/173 (44.51%), Query Frame = 0

Query: 1    MKDFGKTKFCLDLQIEYLANGIFIHQLTYTEKILKRFYMDKAHPLNIPMVVRSLDVKKDI 60
            +K+     + L ++ + +  G+ + Q  YT  +L R  M  A P+  PM           
Sbjct: 1160 VKEHEDLHYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSP------- 1219

Query: 61   FRPREDNKELLGPEVPYLSAIGALMYLANNIRPDIVFSVNLLARYSSSPTKKHWNGVKHV 120
             +    +   L     Y   +G+L YLA   RPD+ ++VN L++Y   PT  HWN +K V
Sbjct: 1220 -KLTLHSGTKLPDPTEYRGIVGSLQYLAFT-RPDLSYAVNRLSQYMHMPTDDHWNALKRV 1279

Query: 121  LHYLRGTIDMDLFYSNKSNFDLVGYVDAGYLSDPHKSRSQTGYLFTCGGTGIS 174
            L YL GT D  +F    +   L  Y DA +  D     S  GY+   G   IS
Sbjct: 1280 LRYLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPIS 1323

BLAST of Cmc10g0278341 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.3e-13
Identity = 51/177 (28.81%), Postives = 83/177 (46.89%), Query Frame = 0

Query: 1   MKDFGKTKFCLDLQIEYLANGIFIHQLTYTEKILKRFYMDKAHPLNIPMVVRSLDVKKDI 60
           MKD G   + L +QI+   +G+F+ Q  Y E+IL    M    P++ P+           
Sbjct: 33  MKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPL----------- 92

Query: 61  FRPREDNKELLGPEVP----YLSAIGALMYLANNIRPDIVFSVNLLARYSSSPTKKHWNG 120
             P + N  +   + P    + S +GAL YL    RPDI ++VN++ +    PT   ++ 
Sbjct: 93  --PLKLNSSVSTAKYPDPSDFRSIVGALQYLTLT-RPDISYAVNIVCQRMHEPTLADFDL 152

Query: 121 VKHVLHYLRGTIDMDLFYSNKSNFDLVGYVDAGYLSDPHKSRSQTGYLFTCGGTGIS 174
           +K VL Y++GTI   L+    S  ++  + D+ +       RS TG+    G   IS
Sbjct: 153 LKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIIS 195

BLAST of Cmc10g0278341 vs. ExPASy TrEMBL
Match: A0A2N9FE48 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS13021 PE=4 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 8.3e-75
Identity = 139/173 (80.35%), Postives = 148/173 (85.55%), Query Frame = 0

Query: 1   MKDFGKTKFCLDLQIEYLANGIFIHQLTYTEKILKRFYMDKAHPLNIPMVVRSLDVKKDI 60
           MKD GKTKFCL LQIE+L +GI IHQ TYTEK+LK F+MDKAHPL+ PMVVRSLDVKKD 
Sbjct: 65  MKDLGKTKFCLGLQIEHLPDGILIHQSTYTEKVLKHFHMDKAHPLSTPMVVRSLDVKKDP 124

Query: 61  FRPREDNKELLGPEVPYLSAIGALMYLANNIRPDIVFSVNLLARYSSSPTKKHWNGVKHV 120
           FRP+E  +E LGPEVPYLSAIGALMYLAN  RPDI FSVNLLARYSS+PT +HWNGVKHV
Sbjct: 125 FRPQEVGEETLGPEVPYLSAIGALMYLANCTRPDIAFSVNLLARYSSAPTLRHWNGVKHV 184

Query: 121 LHYLRGTIDMDLFYSNKSNFDLVGYVDAGYLSDPHKSRSQTGYLFTCGGTGIS 174
           L YLRGT DM LFY NKSN  LVGY DAGYLSDPHK RSQTGYLFTCG T IS
Sbjct: 185 LRYLRGTTDMGLFYPNKSNPQLVGYADAGYLSDPHKGRSQTGYLFTCGNTAIS 237

BLAST of Cmc10g0278341 vs. ExPASy TrEMBL
Match: A0A2N9I5S5 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS47934 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 1.1e-74
Identity = 138/173 (79.77%), Postives = 148/173 (85.55%), Query Frame = 0

Query: 1   MKDFGKTKFCLDLQIEYLANGIFIHQLTYTEKILKRFYMDKAHPLNIPMVVRSLDVKKDI 60
           MKD GKTKFCL LQIE+L +GI IHQ TYTEK+LK F+MDKAHPL+ PMVVRSLDVKKD 
Sbjct: 456 MKDLGKTKFCLGLQIEHLPDGILIHQSTYTEKVLKHFHMDKAHPLSTPMVVRSLDVKKDP 515

Query: 61  FRPREDNKELLGPEVPYLSAIGALMYLANNIRPDIVFSVNLLARYSSSPTKKHWNGVKHV 120
           FRP+E  +E LGPEVPYLSAIGALMYLAN  RPDI FSVNLLARYSS+PT +HWNGVKHV
Sbjct: 516 FRPQEVGEETLGPEVPYLSAIGALMYLANCTRPDIAFSVNLLARYSSAPTLRHWNGVKHV 575

Query: 121 LHYLRGTIDMDLFYSNKSNFDLVGYVDAGYLSDPHKSRSQTGYLFTCGGTGIS 174
           L YLRGT DM LFY NKSN  L+GY DAGYLSDPHK RSQTGYLFTCG T IS
Sbjct: 576 LRYLRGTTDMGLFYPNKSNPQLIGYADAGYLSDPHKGRSQTGYLFTCGNTAIS 628

BLAST of Cmc10g0278341 vs. ExPASy TrEMBL
Match: A0A2N9G6F8 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS22947 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 1.1e-74
Identity = 138/173 (79.77%), Postives = 148/173 (85.55%), Query Frame = 0

Query: 1   MKDFGKTKFCLDLQIEYLANGIFIHQLTYTEKILKRFYMDKAHPLNIPMVVRSLDVKKDI 60
           MKD GKTKFCL LQIE+L +GI IHQ TYTEK+LK F+MDKAHPL+ PMVVRSLDVKKD 
Sbjct: 456 MKDLGKTKFCLGLQIEHLPDGILIHQSTYTEKVLKHFHMDKAHPLSTPMVVRSLDVKKDP 515

Query: 61  FRPREDNKELLGPEVPYLSAIGALMYLANNIRPDIVFSVNLLARYSSSPTKKHWNGVKHV 120
           FRP+E  +E LGPEVPYLSAIGALMYLAN  RPDI FSVNLLARYSS+PT +HWNGVKHV
Sbjct: 516 FRPQEVGEETLGPEVPYLSAIGALMYLANCTRPDIAFSVNLLARYSSAPTLRHWNGVKHV 575

Query: 121 LHYLRGTIDMDLFYSNKSNFDLVGYVDAGYLSDPHKSRSQTGYLFTCGGTGIS 174
           L YLRGT DM LFY NKSN  L+GY DAGYLSDPHK RSQTGYLFTCG T IS
Sbjct: 576 LRYLRGTTDMGLFYPNKSNPQLIGYADAGYLSDPHKGRSQTGYLFTCGNTAIS 628

BLAST of Cmc10g0278341 vs. ExPASy TrEMBL
Match: A0A2N9IT14 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS55560 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 1.1e-74
Identity = 139/173 (80.35%), Postives = 148/173 (85.55%), Query Frame = 0

Query: 1    MKDFGKTKFCLDLQIEYLANGIFIHQLTYTEKILKRFYMDKAHPLNIPMVVRSLDVKKDI 60
            MKD GKTKFCL LQIE+L +GI IHQ TYTEK+LK F+MDKAHPL+ PMVVRSLDVKKD 
Sbjct: 966  MKDLGKTKFCLGLQIEHLPDGILIHQSTYTEKVLKHFHMDKAHPLSTPMVVRSLDVKKDP 1025

Query: 61   FRPREDNKELLGPEVPYLSAIGALMYLANNIRPDIVFSVNLLARYSSSPTKKHWNGVKHV 120
            FRP+E  +E LGPEVPYLSAIGALMYLAN  RPDI FSVNLLARYSS+PT +HWNGVKHV
Sbjct: 1026 FRPQEVGEETLGPEVPYLSAIGALMYLANCTRPDIAFSVNLLARYSSAPTLRHWNGVKHV 1085

Query: 121  LHYLRGTIDMDLFYSNKSNFDLVGYVDAGYLSDPHKSRSQTGYLFTCGGTGIS 174
            L YLRGT DM LFY NKSN  LVGY DAGYLSDPHK RSQTGYLFTCG T IS
Sbjct: 1086 LRYLRGTTDMGLFYPNKSNPQLVGYADAGYLSDPHKGRSQTGYLFTCGDTAIS 1138

BLAST of Cmc10g0278341 vs. ExPASy TrEMBL
Match: A0A2N9G9W6 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24244 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.4e-74
Identity = 139/173 (80.35%), Postives = 148/173 (85.55%), Query Frame = 0

Query: 1   MKDFGKTKFCLDLQIEYLANGIFIHQLTYTEKILKRFYMDKAHPLNIPMVVRSLDVKKDI 60
           MKD GKTKFCL LQIE+L +GI IHQ TYTEK+LK F+MDKAHPL+ PMVVRSLDVKKD 
Sbjct: 482 MKDLGKTKFCLGLQIEHLPDGILIHQSTYTEKVLKHFHMDKAHPLSTPMVVRSLDVKKDP 541

Query: 61  FRPREDNKELLGPEVPYLSAIGALMYLANNIRPDIVFSVNLLARYSSSPTKKHWNGVKHV 120
           FRP+E  +E LGPEVPYLSAIGALMYLAN  RPDI FSVNLLARYSS+PT +HWNGVKHV
Sbjct: 542 FRPQEVGEETLGPEVPYLSAIGALMYLANCTRPDIAFSVNLLARYSSAPTLRHWNGVKHV 601

Query: 121 LHYLRGTIDMDLFYSNKSNFDLVGYVDAGYLSDPHKSRSQTGYLFTCGGTGIS 174
           L YLRGT DM LFY NKSN  LVGY DAGYLSDPHK RSQTGYLFTCG T IS
Sbjct: 602 LRYLRGTTDMRLFYPNKSNPQLVGYADAGYLSDPHKGRSQTGYLFTCGDTAIS 654

BLAST of Cmc10g0278341 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 79.3 bits (194), Expect = 3.3e-15
Identity = 57/176 (32.39%), Postives = 81/176 (46.02%), Query Frame = 0

Query: 1   MKDFGKTKFCLDLQIEYLANGIFIHQLTYTEKILKRFYMDKAHPLNIPM---VVRSLDVK 60
           ++D G  K+ L L+I   A GI I Q  Y   +L    +    P ++PM   V  S    
Sbjct: 310 LRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSG 369

Query: 61  KDIFRPREDNKELLGPEVPYLSAIGALMYLANNIRPDIVFSVNLLARYSSSPTKKHWNGV 120
            D    +            Y   IG LMYL    R DI F+VN L+++S +P   H   V
Sbjct: 370 GDFVDAK-----------AYRRLIGRLMYL-QITRLDISFAVNKLSQFSEAPRLAHQQAV 429

Query: 121 KHVLHYLRGTIDMDLFYSNKSNFDLVGYVDAGYLSDPHKSRSQTGYLFTCGGTGIS 174
             +LHY++GT+   LFYS+++   L  + DA + S     RS  GY    G + IS
Sbjct: 430 MKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLIS 473

BLAST of Cmc10g0278341 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 77.0 bits (188), Expect = 1.6e-14
Identity = 51/177 (28.81%), Postives = 83/177 (46.89%), Query Frame = 0

Query: 1   MKDFGKTKFCLDLQIEYLANGIFIHQLTYTEKILKRFYMDKAHPLNIPMVVRSLDVKKDI 60
           MKD G   + L +QI+   +G+F+ Q  Y E+IL    M    P++ P+           
Sbjct: 33  MKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPL----------- 92

Query: 61  FRPREDNKELLGPEVP----YLSAIGALMYLANNIRPDIVFSVNLLARYSSSPTKKHWNG 120
             P + N  +   + P    + S +GAL YL    RPDI ++VN++ +    PT   ++ 
Sbjct: 93  --PLKLNSSVSTAKYPDPSDFRSIVGALQYLTLT-RPDISYAVNIVCQRMHEPTLADFDL 152

Query: 121 VKHVLHYLRGTIDMDLFYSNKSNFDLVGYVDAGYLSDPHKSRSQTGYLFTCGGTGIS 174
           +K VL Y++GTI   L+    S  ++  + D+ +       RS TG+    G   IS
Sbjct: 153 LKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIIS 195

BLAST of Cmc10g0278341 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 63.9 bits (154), Expect = 1.4e-10
Identity = 32/79 (40.51%), Postives = 46/79 (58.23%), Query Frame = 0

Query: 85  MYLANNIRPDIVFSVNLLARYSSSPTKKHWNGVKHVLHYLRGTIDMDLFYSNKSNFDLVG 144
           MYL    RPD+ F+VN L+++SS+        V  VLHY++GT+   LFYS  S+  L  
Sbjct: 1   MYLTIT-RPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKA 60

Query: 145 YVDAGYLSDPHKSRSQTGY 164
           + D+ + S P   RS TG+
Sbjct: 61  FADSDWASCPDTRRSVTGF 78

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AQY61299.18.5e-7476.88Pol [Coffea canephora][more]
AQY61295.11.1e-7376.88Pol [Coffea arabica][more]
AQY61297.14.2e-7376.30Pol [Coffea canephora][more]
AQY61300.17.2e-7376.30Pol [Coffea eugenioides][more]
RVW42583.11.2e-7275.72Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
Match NameE-valueIdentityDescription
P109781.2e-2237.14Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P041463.5e-2234.50Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
P0CV721.7e-1642.42Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P... [more]
Q9ZT947.1e-1530.06Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
P925192.3e-1328.81Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ... [more]
Match NameE-valueIdentityDescription
A0A2N9FE488.3e-7580.35Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic... [more]
A0A2N9I5S51.1e-7479.77Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic... [more]
A0A2N9G6F81.1e-7479.77Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic... [more]
A0A2N9IT141.1e-7480.35Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS55560 PE=4 SV=1[more]
A0A2N9G9W61.4e-7480.35Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic... [more]
Match NameE-valueIdentityDescription
AT4G23160.13.3e-1532.39cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
ATMG00810.11.6e-1428.81DNA/RNA polymerases superfamily protein [more]
ATMG00240.11.4e-1040.51Gag-Pol-related retrotransposon family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 57..166
NoneNo IPR availablePANTHERPTHR11439:SF308SUBFAMILY NOT NAMEDcoord: 57..166

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc10g0278341.1Cmc10g0278341.1mRNA