Cmc10g0277671 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc10g0277671
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag-Pol polyprotein
Location	CMiso1.1chr10: 13479366 .. 13482589 (+)
RNA-Seq Expression	Cmc10g0277671
Synteny	Cmc10g0277671

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAGATTCAACTACAAAGGCGCCTTAATCCTACCTTGAAGGAAGTTGTCAAGAAAGAGGTTTTGAAGCTCAAAGATGTCGGGATCATCTATTTGGTACCGCGTAGCACTTGGGTAAGCTCCATTCATGTGGTACCCAAGAAGTTCGATGTGACCATTGTGGAAAATGGCTAAGGTGAGTTTGTTTCTACTCGTGTTTTAAATAGCTGGCACATGTGTATCGATTATATAATGCTAAATGAGGTAACTCTTAAAGACCATTTCTCTTTACCTTTTTTAGATCAAATGATTGAACAATTAGGAGGGAAATCTTACTTTTGCTTTCTAGATGGATTTTTCGGATTTTTATCAAATACCCATAGCATGCGAAGGCCAACATAAGACAACTTTTACATGTGAATTTGGAACTTTTGCCTTTAAAAGAATGCCTTTTTGGACTTTGTAATGCTCCCGCAACATTTCAAAGATGCATGTTAAGTAGGGGTGTAAACGAGTTGGGCTGGGTTGGGTTGAGAGACATTTCCAACCTAACCTATATTTTCGGGTTGGTTGAGTTGACAACCCGAATAACTCATATTATATTCCTAACCCAACCCAACCCAACCCTTAAAATATGGGTTGGGTTGGGTTATCGGGTTGTATTATTATTTTTTCATTCTTGATCTTTGTACGTTTTAAGATTGTTGTACGATGTCGATAAACACTCATATCCAAAGTTTCAAACATCTATAAATTCAAAGTTTCAAATATCCATAAAAGTTCAACATTTTAAACACTATCCATAAATATTAAATAAATAATAAAATATCTATAATATAAATATAAATAAATATATATAAAAATTATTAATTCGGGTTGGGTTGGGTTGACCCGAATTTTTCAACCCCCAACCCGAGACCCAACCCAACCCAACCCACATTTTAAACTAACCCAACCCAACCCATATAATATGGGTTGGATAGTCCAAGTTATCGGGTTGTTCGGGTTATTCTTACACCCCTAATGTTAAGTATATTTACTGATTTCATAGGAAAATGCATAGAAGTGTTCGTGGATGATTTCACAGTTTATGGGAACGATTTTGATTCTTGCTTGAATAGCTTAGAGTTGATTTTAAAGAGATGTATTAATACTAATTTAGTGCTTAACTTTGAAAAGTTTCATTCCATGGCTTCTCATGGTATAGTACTAGGTCACTTAGTATCATCTAAGGAAATAGGTCTTGATAAAGCTAAAATAAGTGTCATTCAAAACTTGTCCTACCTCACTTGTTTAAAGGATGTTAAATCATTTTTGGATAGTGCCGGATTTTATAGAAGGTTCATTAAAGACTTTTCTAAGATAGCTTTGCTCCTGACAAATTTACTTCAAAAAGATGTTCCTTTTGTAATTGATAATAAATGTGTGCATGCTTTTAATACTTTGAAAGATAAGTTGACTTCTTCTCCTATCTTTCAAACACCTAATTGGAACCTGCCATTTAAGATCATGTGTGATGCAAATGATTATGCATTAGGTGCAGTTCTAAGACAAAGAATATATAATAAATTGCATGCTAGATATTTTGCATCTCAAACTCTAAACTTTGCTCAAGCTAATTACTTCAGAACTGACAAAGAGTTTTTGTCTATAATCTTTGCTCTTGACAAATTTCTTAGCTACATAATTGGATAAAAAATAACTATGTTTACTTATCATGCAGCTATAAAATATCTTGCAAACAAAAAGGAGAGCAAGGCAAGGATCATCAGATGGGTACTCTTACTTCAAGAGTTTAATTTGACAATGAAAGATAGGAAAGGTATGGACAATCCCATCGTCGATGACCTAAGTAGAATTGTTAAAAAAACAAGATGAAAATTTGGTAATGGGGATTTTCTTTGATGAATACCTCTTCAAGTTAGGTTTGCACTCTCCATGGTATGGTGACATTGTTAATTACTTTGTAAACGGTAAACTTCCTTCTCGTTTCTCTTATAATAAAAATTGCAAATTGAGTCAAAGCATTATGTTTAGGAGTCTCCTTACATTTGGAAAGTAGGAATAGACCAAGTTGTTAGAAGATGTGTTGTTGAAAATGAGCATGAATCTGTTTTATCATTTTGCCATGAAAGAGTATGTGAAAGACATATTGGTCCCAAACGTACTACTAGGAAGATTTTAGATTATGGATTTTACTAGAAAACATTATTTGTTGACTCTTATGCATATTGCAAATCATGTGAAAAATGTCAAAAGTTTGGCTCTATTTCTAAAAGGAATGAAATGCCATTCAAACAAATTCACCCTTGTGAAGTCTTCGACATTTGGGGAATTGATCTCATGGGACCATTTCCTTCCTGTTTTGGAAACCTTTATATTATTCTAGCAGTTGATTATGTGTCTAAATTGGTTGAGTCAATCACCACCAGAATTAACTCTTCCTCCGTTGTTTCCTCTTTTTTAGTTGCAAACATTTTCTCTAGGTTTGGTACTCCCAAAGCCATAATAAGCGACCAAGAAATCCACTTTTGTAATTGAACCATCGAGGCATTGACGAAGAAATACAGAGTCCAAAACCGAGTTTCAACTTCGTATCATCCTCAAACAAATGACCAAGCAGAAATTTCCAATCGAGAGGTAAAGGGCATTCTTCAAAAAACTGTTAATCGCAATAGAAAATATTGGAGCATTAGATTGAATGATGCACTTTGAGCTTATAGGACAACTTATAAAACACCCATAGGCACAACACCTTTTAAATTAGTGTTTGGTAAAGCATGTCATCTTACCGTAGAATTAGAACACAAAACTTTTTGGGCTATTGAAAGTGCAACTTATCTCTTGAAGAAGCCGACAAGAATAGATTGTTAGACTTAGTGAGTTAGAAGAACATAGGCTTGACTCTTATGAGAACTCTAAGATCTATAAAGAGAAAACCAAACTTTACCATGATAGAAAGATTATTAAAAAAGAGTTCAAAGTATGGGATAACGTGCTTCTTTATAACTCATCTCTATCTTTTATGCCAGGCAAACTAAAATCCAAGTGGATTGACCCATTTGTTGTTTCTAATGTCTTTGACTATGGTGCAGTTGAGATTATAAGTGAAAAAACAGGAAAAGTTCTCAAAGTAAATGAGCATAGACACAATATCTTCATTGAAGGGGAATCCACATCATCCTAAGTGTGCAAGATTACACTTCTCCATCCCACATACACTTGAGATCACAAGAATAAACCGTCG

mRNA sequence

CAAGATTCAACTACAAAGGCGCCTTAATCCTACCTTGAAGGAAGTTGTCAAGAAAGAGGTTTTGAAGCTCAAAGATGTCGGGATCATCTATTTGGTACCGCGTAGCACTTGGGTAAGCTCCATTCATGTGGTACCCAAGAAGTTCGATGTGACCATTGTGGAAAATGGCTAAGCTATAAAATATCTTGCAAACAAAAAGGAGAGCAAGGCAAGGATCATCAGATGGGTACTCTTACTTCAAGAGTTTAATTTGACAATGAAAGATAGGAAAGGTATGGACAATCCCATCGTCGATGACCTAAGTAGAATTGTTAAAAAAACAAGATGAAAATTTGGTAATGGGGATTTTCTTTGATGAATACCTCTTCAAGTTAGGTTTGCACTCTCCATGGTATGGTGACATTGTTAATTACTTTGTAAACGGTAAACTTCCTTCTCGTTTCTCTTATAATAAAAATTGCAAATTGAGTCAAAGCATTATGTTTAGGAGTCTCCTTACATTTGGAAAGTAGGAATAGACCAAGTTGTTAGAAGATGTGTTGTTGAAAATGAGCATGAATCTGTTTTATCATTTTGCCATGAAAGAGTATGTGAAAGACATATTGGTCCCAAACGTACTACTAGGAAGATTTTAGATTATGGATTTTACTAGAAAACATTATTTGTTGACTCTTATGCATATTGCAAATCATGTGAAAAATGTCAAAAGTTTGGCTCTATTTCTAAAAGGAATGAAATGCCATTCAAACAAATTCACCCTTGTGAAGTCTTCGACATTTGGGGAATTGATCTCATGGGACCATTTCCTTCCTGTTTTGGAAACCTTTATATTATTCTAGCAGTTGATTATGTGTCTAAATTGGTTGAGTCAATCACCACCAGAATTAACTCTTCCTCCGTTGTTTCCTCTTTTTTAGTTGCAAACATTTTCTCTAGGTTTGGTACTCCCAAAGCCATAATAAGCGACCAAGAAATCCACTTTTGTAATTGAACCATCGAGGCATTGACGAAGAAATACAGAGTCCAAAACCGAGTTTCAACTTCGTATCATCCTCAAACAAATGACCAAGCAGAAATTTCCAATCGAGAGTTGAGATTATAAGTGAAAAAACAGGAAAAGTTCTCAAAGTAAATGAGCATAGACACAATATCTTCATTGAAGGGGAATCCACATCATCCTAAGTGTGCAAGATTACACTTCTCCATCCCACATACACTTGAGATCACAAGAATAAACCGTCG

Coding sequence (CDS)

ATGCCATTCAAACAAATTCACCCTTGTGAAGTCTTCGACATTTGGGGAATTGATCTCATGGGACCATTTCCTTCCTGTTTTGGAAACCTTTATATTATTCTAGCAGTTGATTATGTGTCTAAATTGGTTGAGTCAATCACCACCAGAATTAACTCTTCCTCCGTTGTTTCCTCTTTTTTAGTTGCAAACATTTTCTCTAGGTTTGGTACTCCCAAAGCCATAATAAGCGACCAAGAAATCCACTTTTGTAATTGA

Protein sequence

MPFKQIHPCEVFDIWGIDLMGPFPSCFGNLYIILAVDYVSKLVESITTRINSSSVVSSFLVANIFSRFGTPKAIISDQEIHFCN

Homology

[Close]

BLAST of Cmc10g0277671 vs. NCBI nr
Match: KAF5804657.1 (putative nucleotidyltransferase, Ribonuclease H [Helianthus annuus])

HSP 1 Score: 126.3 bits (316), Expect = 1.2e-25
Identity = 59/84 (70.24%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 1   MPFKQIHPCEVFDIWGIDLMGPFPSCFGNLYIILAVDYVSKLVESITTRINSSSVVSSFL 60
           MP   I  CE+FD+WGID MGPFPS FGN+YI+LAVDYVSK VE+  TR N S VVS F+
Sbjct: 692 MPLTPILVCEIFDVWGIDFMGPFPSSFGNVYILLAVDYVSKWVEAKATRTNDSKVVSGFI 751

Query: 61  VANIFSRFGTPKAIISDQEIHFCN 85
            ANIFSRFGTPKA ISD+  HFCN
Sbjct: 752 KANIFSRFGTPKAFISDRGSHFCN 775

[Close]

BLAST of Cmc10g0277671 vs. NCBI nr
Match: XP_024036973.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC112096958 [Citrus clementina])

HSP 1 Score: 118.6 bits (296), Expect = 2.5e-23
Identity = 56/84 (66.67%), Postives = 64/84 (76.19%), Query Frame = 0


Query: 1    MPFKQIHPCEVFDIWGIDLMGPFPSCFGNLYIILAVDYVSKLVESITTRINSSSVVSSFL 60
            MP   I   E+FD+WGID MGPFPS FGNLYI+L VDYVSK VE+  TR N S VV  F+
Sbjct: 1492 MPQSPILIVEIFDVWGIDFMGPFPSSFGNLYIVLTVDYVSKWVEAKVTRTNDSKVVVDFI 1551

Query: 61   VANIFSRFGTPKAIISDQEIHFCN 85
             +NIF+RFGTPKAIISD+  HFCN
Sbjct: 1552 KSNIFTRFGTPKAIISDRGTHFCN 1575

[Close]

BLAST of Cmc10g0277671 vs. NCBI nr
Match: XP_028798815.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC114754213 [Prosopis alba])

HSP 1 Score: 117.9 bits (294), Expect = 4.3e-23
Identity = 56/84 (66.67%), Postives = 67/84 (79.76%), Query Frame = 0


Query: 1    MPFKQIHPCEVFDIWGIDLMGPFPSCFGNLYIILAVDYVSKLVESITTRINSSSVVSSFL 60
            MP + +  CEVFD+WGID MGPFP+ FG +YI+LAVDYVSK VE+I TR N SSVV SF+
Sbjct: 1283 MPQQPLLFCEVFDVWGIDFMGPFPTSFGYVYILLAVDYVSKWVEAIPTRTNDSSVVVSFV 1342

Query: 61   VANIFSRFGTPKAIISDQEIHFCN 85
             ++IF RFG P+AIISDQ  HFCN
Sbjct: 1343 RSHIFCRFGIPRAIISDQGTHFCN 1366

[Close]

BLAST of Cmc10g0277671 vs. NCBI nr
Match: XP_028802716.1 (uncharacterized protein LOC114757797 [Prosopis alba])

HSP 1 Score: 117.9 bits (294), Expect = 4.3e-23
Identity = 56/84 (66.67%), Postives = 67/84 (79.76%), Query Frame = 0


Query: 1    MPFKQIHPCEVFDIWGIDLMGPFPSCFGNLYIILAVDYVSKLVESITTRINSSSVVSSFL 60
            MP + +  CEVFD+WGID MGPFP+ FG +YI+LAVDYVSK VE+I TR N SSVV SF+
Sbjct: 1134 MPQQPLLFCEVFDVWGIDFMGPFPTSFGYVYILLAVDYVSKWVEAIPTRTNDSSVVVSFV 1193

Query: 61   VANIFSRFGTPKAIISDQEIHFCN 85
             ++IF RFG P+AIISDQ  HFCN
Sbjct: 1194 RSHIFCRFGIPRAIISDQGTHFCN 1217

[Close]

BLAST of Cmc10g0277671 vs. NCBI nr
Match: GAU47094.1 (hypothetical protein TSUD_369270 [Trifolium subterraneum])

HSP 1 Score: 117.9 bits (294), Expect = 4.3e-23
Identity = 56/84 (66.67%), Postives = 65/84 (77.38%), Query Frame = 0


Query: 1    MPFKQIHPCEVFDIWGIDLMGPFPSCFGNLYIILAVDYVSKLVESITTRINSSSVVSSFL 60
            MP K +  CEVFD+WGID MGPFP  FG LYI+LAVDYVSK VE+I TR N + VV+ F+
Sbjct: 1253 MPQKSMLFCEVFDVWGIDFMGPFPMSFGFLYILLAVDYVSKWVEAIPTRTNDARVVADFV 1312

Query: 61   VANIFSRFGTPKAIISDQEIHFCN 85
             +NIF RFG P+AIISDQ  HFCN
Sbjct: 1313 RSNIFCRFGIPRAIISDQGTHFCN 1336

[Close]

BLAST of Cmc10g0277671 vs. ExPASy Swiss-Prot
Match: Q2F7J0 (Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP42) OX=356664 GN=gag-pol PE=3 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 6.1e-04
Identity = 23/63 (36.51%), Postives = 36/63 (57.14%), Query Frame = 0


Query: 15   WGIDLMGPFPSCFGNLYIILAVDYVSKLVESITTRINSSSVVSSFLVANIFSRFGTPKAI 74
            W +D     P  +G  Y+++ VD  S  VE+  T+  ++ VVS  L+ +IF RFG P+ +
Sbjct: 1450 WEVDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKRETAKVVSKKLLEDIFPRFGMPQVL 1509

Query: 75   ISD 78
             SD
Sbjct: 1510 GSD 1512

[Close]

BLAST of Cmc10g0277671 vs. ExPASy Swiss-Prot
Match: A1Z651 (Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP62) OX=373193 GN=gag-pol PE=1 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 6.1e-04
Identity = 23/63 (36.51%), Postives = 36/63 (57.14%), Query Frame = 0


Query: 15   WGIDLMGPFPSCFGNLYIILAVDYVSKLVESITTRINSSSVVSSFLVANIFSRFGTPKAI 74
            W +D     P  +G  Y+++ VD  S  VE+  T+  ++ VVS  L+ +IF RFG P+ +
Sbjct: 1450 WEVDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKRETAKVVSKKLLEDIFPRFGMPQVL 1509

Query: 75   ISD 78
             SD
Sbjct: 1510 GSD 1512

[Close]

BLAST of Cmc10g0277671 vs. ExPASy Swiss-Prot
Match: P03356 (Gag-Pol polyprotein OS=AKV murine leukemia virus OX=11791 GN=pol PE=3 SV=3)

HSP 1 Score: 44.3 bits (103), Expect = 8.0e-04
Identity = 24/63 (38.10%), Postives = 35/63 (55.56%), Query Frame = 0


Query: 15   WGIDLMGPFPSCFGNLYIILAVDYVSKLVESITTRINSSSVVSSFLVANIFSRFGTPKAI 74
            W ID     P  +G  Y+++ VD  S  VE+  T+  ++ VVS  L+  IF RFG P+ +
Sbjct: 1451 WEIDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKRETARVVSKKLLEEIFPRFGMPQVL 1510

Query: 75   ISD 78
             SD
Sbjct: 1511 GSD 1513

[Close]

BLAST of Cmc10g0277671 vs. ExPASy Swiss-Prot
Match: Q7SVK7 (Gag-pol polyprotein OS=Murine leukemia virus (strain BM5 eco) OX=31687 GN=gag-pol PE=3 SV=2)

HSP 1 Score: 44.3 bits (103), Expect = 8.0e-04
Identity = 24/63 (38.10%), Postives = 35/63 (55.56%), Query Frame = 0


Query: 15   WGIDLMGPFPSCFGNLYIILAVDYVSKLVESITTRINSSSVVSSFLVANIFSRFGTPKAI 74
            W ID     P  +G  Y+++ VD  S  VE+  T+  ++ VVS  L+  IF RFG P+ +
Sbjct: 1451 WEIDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKRETARVVSKKLLEEIFPRFGMPQVL 1510

Query: 75   ISD 78
             SD
Sbjct: 1511 GSD 1513

[Close]

BLAST of Cmc10g0277671 vs. ExPASy TrEMBL
Match: A0A251UM01 (Putative reverse transcriptase domain, Ribonuclease H-like domain protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr05g0135911 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 5.9e-26
Identity = 59/84 (70.24%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 1   MPFKQIHPCEVFDIWGIDLMGPFPSCFGNLYIILAVDYVSKLVESITTRINSSSVVSSFL 60
           MP   I  CE+FD+WGID MGPFPS FGN+YI+LAVDYVSK VE+  TR N S VVS F+
Sbjct: 692 MPLTPILVCEIFDVWGIDFMGPFPSSFGNVYILLAVDYVSKWVEAKATRTNDSKVVSGFI 751

Query: 61  VANIFSRFGTPKAIISDQEIHFCN 85
            ANIFSRFGTPKA ISD+  HFCN
Sbjct: 752 KANIFSRFGTPKAFISDRGSHFCN 775

[Close]

BLAST of Cmc10g0277671 vs. ExPASy TrEMBL
Match: A0A2Z6NS99 (Integrase catalytic domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_369270 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.1e-23
Identity = 56/84 (66.67%), Postives = 65/84 (77.38%), Query Frame = 0


Query: 1    MPFKQIHPCEVFDIWGIDLMGPFPSCFGNLYIILAVDYVSKLVESITTRINSSSVVSSFL 60
            MP K +  CEVFD+WGID MGPFP  FG LYI+LAVDYVSK VE+I TR N + VV+ F+
Sbjct: 1253 MPQKSMLFCEVFDVWGIDFMGPFPMSFGFLYILLAVDYVSKWVEAIPTRTNDARVVADFV 1312

Query: 61   VANIFSRFGTPKAIISDQEIHFCN 85
             +NIF RFG P+AIISDQ  HFCN
Sbjct: 1313 RSNIFCRFGIPRAIISDQGTHFCN 1336

[Close]

BLAST of Cmc10g0277671 vs. ExPASy TrEMBL
Match: A0A6P6WXZ3 (uncharacterized protein LOC113735511 OS=Coffea arabica OX=13443 GN=LOC113735511 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.7e-23
Identity = 53/84 (63.10%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 1    MPFKQIHPCEVFDIWGIDLMGPFPSCFGNLYIILAVDYVSKLVESITTRINSSSVVSSFL 60
            MP   I  CE+FDIWGID MGPFPS FGN+YI+LAVDYVSK +E+  TR +++ VV  F+
Sbjct: 1301 MPLTPILVCEIFDIWGIDFMGPFPSSFGNMYILLAVDYVSKWIEAKATRTDNAKVVVDFI 1360

Query: 61   VANIFSRFGTPKAIISDQEIHFCN 85
             ++IF R+GTP+AIISDQ  HFCN
Sbjct: 1361 KSHIFVRYGTPRAIISDQGTHFCN 1384

[Close]

BLAST of Cmc10g0277671 vs. ExPASy TrEMBL
Match: A0A5N6PVX3 (Reverse transcriptase OS=Mikania micrantha OX=192012 GN=E3N88_04209 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 4.7e-23
Identity = 54/84 (64.29%), Postives = 63/84 (75.00%), Query Frame = 0


Query: 1   MPFKQIHPCEVFDIWGIDLMGPFPSCFGNLYIILAVDYVSKLVESITTRINSSSVVSSFL 60
           MP   I  CE+FD+WGID MGPFPS FGN YI+LAVDYVSK VE+  TR N S VV+SF+
Sbjct: 790 MPLTPIFVCEIFDVWGIDFMGPFPSLFGNAYILLAVDYVSKWVEAKATRTNDSKVVASFI 849

Query: 61  VANIFSRFGTPKAIISDQEIHFCN 85
             NI SRFG P+A ISD+  +FCN
Sbjct: 850 KNNILSRFGVPRAFISDRVSYFCN 873

[Close]

BLAST of Cmc10g0277671 vs. ExPASy TrEMBL
Match: A0A392QG21 (KRAB-A domain-containing protein 2-like OS=Trifolium medium OX=97028 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 6.1e-23
Identity = 53/84 (63.10%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 1  MPFKQIHPCEVFDIWGIDLMGPFPSCFGNLYIILAVDYVSKLVESITTRINSSSVVSSFL 60
          MP   I   E+FD+WGID MGPFP+ FGNLYI++AVDYVSK VE+I +  N + VV++FL
Sbjct: 1  MPLTNILEIELFDVWGIDFMGPFPNSFGNLYILVAVDYVSKWVEAIASPTNDAKVVTNFL 60

Query: 61 VANIFSRFGTPKAIISDQEIHFCN 85
            NIF+RFGTP+AIISD+  HFCN
Sbjct: 61 KKNIFTRFGTPRAIISDEGSHFCN 84

The following BLAST results are available for this feature:

BLAST of Cmc10g0277671 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF5804657.1	1.2e-25	70.24	putative nucleotidyltransferase, Ribonuclease H [Helianthus annuus]	[more]
XP_024036973.1	2.5e-23	66.67	LOW QUALITY PROTEIN: uncharacterized protein LOC112096958 [Citrus clementina]	[more]
XP_028798815.1	4.3e-23	66.67	LOW QUALITY PROTEIN: uncharacterized protein LOC114754213 [Prosopis alba]	[more]
XP_028802716.1	4.3e-23	66.67	uncharacterized protein LOC114757797 [Prosopis alba]	[more]
GAU47094.1	4.3e-23	66.67	hypothetical protein TSUD_369270 [Trifolium subterraneum]	[more]

BLAST of Cmc10g0277671 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2F7J0	6.1e-04	36.51	Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP42) OX=356664 GN...	[more]
A1Z651	6.1e-04	36.51	Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP62) OX=373193 GN...	[more]
P03356	8.0e-04	38.10	Gag-Pol polyprotein OS=AKV murine leukemia virus OX=11791 GN=pol PE=3 SV=3	[more]
Q7SVK7	8.0e-04	38.10	Gag-pol polyprotein OS=Murine leukemia virus (strain BM5 eco) OX=31687 GN=gag-po...	[more]

BLAST of Cmc10g0277671 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A251UM01	5.9e-26	70.24	Putative reverse transcriptase domain, Ribonuclease H-like domain protein OS=Hel...	[more]
A0A2Z6NS99	2.1e-23	66.67	Integrase catalytic domain-containing protein OS=Trifolium subterraneum OX=3900 ...	[more]
A0A6P6WXZ3	2.7e-23	63.10	uncharacterized protein LOC113735511 OS=Coffea arabica OX=13443 GN=LOC113735511 ...	[more]
A0A5N6PVX3	4.7e-23	64.29	Reverse transcriptase OS=Mikania micrantha OX=192012 GN=E3N88_04209 PE=4 SV=1	[more]
A0A392QG21	6.1e-23	63.10	KRAB-A domain-containing protein 2-like OS=Trifolium medium OX=97028 PE=4 SV=1	[more]

BLAST of Cmc10g0277671 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 3..84 e-value: 8.5E-18 score: 66.3
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 1..84
None	No IPR available	PANTHER	PTHR24559:SF373	REVERSE TRANSCRIPTASE DOMAIN, RIBONUCLEASE H-LIKE DOMAIN PROTEIN-RELATED	coord: 1..84
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 4..84 score: 12.3077
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 6..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc10g0277671.1	Cmc10g0277671.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding