Cmc10g0277491 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc10g0277491
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr10: 13325174 .. 13325932 (-)
RNA-Seq Expression	Cmc10g0277491
Synteny	Cmc10g0277491

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGTCAAAACTCAGGGAGGGTACAAATATTTCATTAGTTTTATTGATGATTATTCTAGGTATGGTCATGTTTACCTAGTTCATCATAAGTCTGATTCTCTTGAAAAGTTCAAAGAATATAAGGCTGAAGTTGAGAATGAATTAGTTAAAACAATAAAGAAACTTCGATCAGATCGAGGTGAAGAGTATATGGACTTACGATTCCAAAACTATTTGATAGAACGTGAAATCCAGTCACAACTCTCTGCATCTAGTACATCTCAGCAGAACGGTATATCAGAAAGAAGAAACCAAACCTTGTTAGACATGGTTCGCTTTATGATGAGCTTTGCTCAGTTGCTAGATTCCTTTTGGGGATATGCTTTAGAAACAGCTATCTATATTTTGAACAACGTTCCCTCTAAAAGTATTTCAAAAATACCTTATGAGCTATGCAAAGAGCATAAAGGAAGTTTACGTCACTTTAGAATTTGGGGATGTCCGACACACGTGTTGGTGCAAAACCCTAAAAAATTGGAACATCGTTCAAAATTATGCGTATTCATAGGATATCCAAAGGAATCTAGAGATAGTTTGTTTTACGATCCTCAAGAAAATAAAGTATTTGTATCAAAAAATGTCACATTCTTAGAGGAAGACCACATAAGGGATCATCAACCTCGCAGTAAATTAGTATTAAATGAGATTTCCAAGAGTGCTAAAGATAAACCTAGCTCATCCACTAAAATAGTTGATAAAACTAAGCAATCTGGTTAA

mRNA sequence

ATGAATGTCAAAACTCAGGGAGGGTACAAATATTTCATTAGTTTTATTGATGATTATTCTAGGTATGGTCATGTTTACCTAGTTCATCATAAGTCTGATTCTCTTGAAAAGTTCAAAGAATATAAGGCTGAAGTTGAGAATGAATTAGTTAAAACAATAAAGAAACTTCGATCAGATCGAGGTGAAGAGTATATGGACTTACGATTCCAAAACTATTTGATAGAACGTGAAATCCAGTCACAACTCTCTGCATCTAGTACATCTCAGCAGAACGGTATATCAGAAAGAAGAAACCAAACCTTGTTAGACATGGTTCGCTTTATGATGAGCTTTGCTCAGTTGCTAGATTCCTTTTGGGGATATGCTTTAGAAACAGCTATCTATATTTTGAACAACGTTCCCTCTAAAAGTATTTCAAAAATACCTTATGAGCTATGCAAAGAGCATAAAGGAAGTTTACGTCACTTTAGAATTTGGGGATGTCCGACACACGTGTTGGTGCAAAACCCTAAAAAATTGGAACATCGTTCAAAATTATGCGTATTCATAGGATATCCAAAGGAATCTAGAGATAGTTTGTTTTACGATCCTCAAGAAAATAAAGTATTTGTATCAAAAAATGTCACATTCTTAGAGGAAGACCACATAAGGGATCATCAACCTCGCAGTAAATTAGTATTAAATGAGATTTCCAAGAGTGCTAAAGATAAACCTAGCTCATCCACTAAAATAGTTGATAAAACTAAGCAATCTGGTTAA

Coding sequence (CDS)

ATGAATGTCAAAACTCAGGGAGGGTACAAATATTTCATTAGTTTTATTGATGATTATTCTAGGTATGGTCATGTTTACCTAGTTCATCATAAGTCTGATTCTCTTGAAAAGTTCAAAGAATATAAGGCTGAAGTTGAGAATGAATTAGTTAAAACAATAAAGAAACTTCGATCAGATCGAGGTGAAGAGTATATGGACTTACGATTCCAAAACTATTTGATAGAACGTGAAATCCAGTCACAACTCTCTGCATCTAGTACATCTCAGCAGAACGGTATATCAGAAAGAAGAAACCAAACCTTGTTAGACATGGTTCGCTTTATGATGAGCTTTGCTCAGTTGCTAGATTCCTTTTGGGGATATGCTTTAGAAACAGCTATCTATATTTTGAACAACGTTCCCTCTAAAAGTATTTCAAAAATACCTTATGAGCTATGCAAAGAGCATAAAGGAAGTTTACGTCACTTTAGAATTTGGGGATGTCCGACACACGTGTTGGTGCAAAACCCTAAAAAATTGGAACATCGTTCAAAATTATGCGTATTCATAGGATATCCAAAGGAATCTAGAGATAGTTTGTTTTACGATCCTCAAGAAAATAAAGTATTTGTATCAAAAAATGTCACATTCTTAGAGGAAGACCACATAAGGGATCATCAACCTCGCAGTAAATTAGTATTAAATGAGATTTCCAAGAGTGCTAAAGATAAACCTAGCTCATCCACTAAAATAGTTGATAAAACTAAGCAATCTGGTTAA

Protein sequence

MNVKTQGGYKYFISFIDDYSRYGHVYLVHHKSDSLEKFKEYKAEVENELVKTIKKLRSDRGEEYMDLRFQNYLIEREIQSQLSASSTSQQNGISERRNQTLLDMVRFMMSFAQLLDSFWGYALETAIYILNNVPSKSISKIPYELCKEHKGSLRHFRIWGCPTHVLVQNPKKLEHRSKLCVFIGYPKESRDSLFYDPQENKVFVSKNVTFLEEDHIRDHQPRSKLVLNEISKSAKDKPSSSTKIVDKTKQSG

Homology

[Close]

BLAST of Cmc10g0277491 vs. NCBI nr
Match: TYK30724.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 401.7 bits (1031), Expect = 4.5e-108
Identity = 199/252 (78.97%), Postives = 220/252 (87.30%), Query Frame = 0


Query: 1   MNVKTQGGYKYFISFIDDYSRYGHVYLVHHKSDSLEKFKEYKAEVENELVKTIKKLRSDR 60
           MNVK QGGY+YFISFIDDYSRYG++YL+ +KSDS EKFKEYKAEVENE  KTIK LRSDR
Sbjct: 1   MNVKAQGGYEYFISFIDDYSRYGYIYLIQNKSDSFEKFKEYKAEVENESGKTIKTLRSDR 60

Query: 61  GEEYMDLRFQNYLIEREIQSQLSASSTSQQNGISERRNQTLLDMVRFMMSFAQLLDSFWG 120
           GEEYMDLRFQ+YLIE  IQSQLSA +T QQNG+SERRN+ LLDMVR M SFAQL DSFWG
Sbjct: 61  GEEYMDLRFQDYLIEHRIQSQLSAPNTPQQNGVSERRNRALLDMVRSMTSFAQLPDSFWG 120

Query: 121 YALETAIYILNNVPSKSISKIPYELCKEHKGSLRHFRIWGCPTHVLVQNPKKLEHRSKLC 180
           YALET IYILNNVPSKS+S+ PYEL K  KGSLRHFRIWGCP+HVLVQNP KLEHRSKLC
Sbjct: 121 YALETTIYILNNVPSKSVSETPYELWKGRKGSLRHFRIWGCPSHVLVQNPNKLEHRSKLC 180

Query: 181 VFIGYPKESRDSLFYDPQENKVFVSKNVTFLEEDHIRDHQPRSKLVLNEISKSAKDKPSS 240
           +F+GYPKES+  LFYDPQENKVFVS N TFLEE HIR+HQ R+KLVL EISK+  D+PSS
Sbjct: 181 LFVGYPKESKGGLFYDPQENKVFVSINATFLEEYHIRNHQTRNKLVLEEISKNGTDRPSS 240

Query: 241 STKIVDKTKQSG 253
            TK+VDKT+  G
Sbjct: 241 PTKVVDKTRNIG 252

[Close]

BLAST of Cmc10g0277491 vs. NCBI nr
Match: ADJ18449.1 (gag/pol protein, partial [Bryonia dioica])

HSP 1 Score: 394.4 bits (1012), Expect = 7.2e-106
Identity = 197/251 (78.49%), Postives = 219/251 (87.25%), Query Frame = 0


Query: 1   MNVKTQGGYKYFISFIDDYSRYGHVYLVHHKSDSLEKFKEYKAEVENELVKTIKKLRSDR 60
           MNVK +GGY+YFISFIDD+SRYGHVYL+HHKS+S EKFKEYKAEVENE+ KTIK LRSDR
Sbjct: 512 MNVKARGGYEYFISFIDDFSRYGHVYLLHHKSESFEKFKEYKAEVENEIGKTIKTLRSDR 571

Query: 61  GEEYMDLRFQNYLIEREIQSQLSASSTSQQNGISERRNQTLLDMVRFMMSFAQLLDSFWG 120
           G EYMD +FQ+YLIE  IQSQLSA ST QQNG+SERRN+TLLDMVR MMS+AQL DSFWG
Sbjct: 572 GGEYMDSKFQDYLIEFGIQSQLSAPSTPQQNGVSERRNRTLLDMVRSMMSYAQLPDSFWG 631

Query: 121 YALETAIYILNNVPSKSISKIPYELCKEHKGSLRHFRIWGCPTHVLVQNPKKLEHRSKLC 180
           YALETAI+ILNNVPSKS+ + PYEL K  K SLR+FRIWGCP HVLVQNPKKLE RSKLC
Sbjct: 632 YALETAIHILNNVPSKSVLETPYELWKGRKSSLRYFRIWGCPAHVLVQNPKKLEPRSKLC 691

Query: 181 VFIGYPKESRDSLFYDPQENKVFVSKNVTFLEEDHIRDHQPRSKLVLNEISKSAKDKPSS 240
           +F+GYPKESR  LFY PQENKVFVS N TFLEEDH R+HQPRSK+VL E+ K+A DKPSS
Sbjct: 692 LFVGYPKESRGGLFYHPQENKVFVSTNATFLEEDHXRNHQPRSKIVLKEMFKNATDKPSS 751

Query: 241 STKIVDKTKQS 252
           STK+VDK   S
Sbjct: 752 STKVVDKANIS 762

[Close]

BLAST of Cmc10g0277491 vs. NCBI nr
Match: KAA0059681.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK26119.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 365.9 bits (938), Expect = 2.7e-97
Identity = 188/252 (74.60%), Postives = 201/252 (79.76%), Query Frame = 0


Query: 1   MNVKTQGGYKYFISFIDDYSRYGHVYLVHHKSDSLEKFKEYKAEVENELVKTIKKLRSDR 60
           MNVK +GGYKYFISFIDDYSRY HVYL+HHKSDS E FKEYK EVENEL           
Sbjct: 28  MNVKARGGYKYFISFIDDYSRYNHVYLIHHKSDSFENFKEYKVEVENEL----------- 87

Query: 61  GEEYMDLRFQNYLIEREIQSQLSASSTSQQNGISERRNQTLLDMVRFMMSFAQLLDSFWG 120
                         E EIQSQLSA ST QQNG+ ERRN+TLLDMVR MM+FAQL DSFWG
Sbjct: 88  --------------EHEIQSQLSAPSTPQQNGVLERRNRTLLDMVRSMMNFAQLPDSFWG 147

Query: 121 YALETAIYILNNVPSKSISKIPYELCKEHKGSLRHFRIWGCPTHVLVQNPKKLEHRSKLC 180
           YALET++YILNNVP KS+S+ PYEL K  KGSLRHFRIWGCPTHVLVQNPKKLEHRSKLC
Sbjct: 148 YALETSVYILNNVPFKSVSETPYELWKGRKGSLRHFRIWGCPTHVLVQNPKKLEHRSKLC 207

Query: 181 VFIGYPKESRDSLFYDPQENKVFVSKNVTFLEEDHIRDHQPRSKLVLNEISKSAKDKPSS 240
           +F+GYPKESR  LFYDPQENKVFVS N  FLEEDHIRDHQ RSKLVLNEI KSA +K SS
Sbjct: 208 LFVGYPKESRGGLFYDPQENKVFVSTNSIFLEEDHIRDHQARSKLVLNEIFKSATNKSSS 254

Query: 241 STKIVDKTKQSG 253
           STK+VDKTK SG
Sbjct: 268 STKVVDKTKVSG 254

[Close]

BLAST of Cmc10g0277491 vs. NCBI nr
Match: KAA0026233.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 354.0 bits (907), Expect = 1.1e-93
Identity = 173/247 (70.04%), Postives = 207/247 (83.81%), Query Frame = 0


Query: 1   MNVKTQGGYKYFISFIDDYSRYGHVYLVHHKSDSLEKFKEYKAEVENELVKTIKKLRSDR 60
           MNVK +GG++YFI+F DDYSRYG+VYL+ HKS++LEKFKEYKAEVEN L KTIK  RSDR
Sbjct: 380 MNVKARGGFEYFITFTDDYSRYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSDR 439

Query: 61  GEEYMDLRFQNYLIEREIQSQLSASSTSQQNGISERRNQTLLDMVRFMMSFAQLLDSFWG 120
           G EYMDL+FQNYL+E  I SQLSA  T QQNG+SERRN+TLLDMVR MMS+A L +SFWG
Sbjct: 440 GGEYMDLKFQNYLMECGIVSQLSAPDTPQQNGVSERRNRTLLDMVRSMMSYAHLPNSFWG 499

Query: 121 YALETAIYILNNVPSKSISKIPYELCKEHKGSLRHFRIWGCPTHVLVQNPKKLEHRSKLC 180
           YA++TA+YILN VPSKS+S+ P +L   HKGSLRHFRIWGCP HVL  NPKKLE RSKLC
Sbjct: 500 YAVQTAVYILNCVPSKSVSETPLKLWNGHKGSLRHFRIWGCPAHVLENNPKKLEPRSKLC 559

Query: 181 VFIGYPKESRDSLFYDPQENKVFVSKNVTFLEEDHIRDHQPRSKLVLNEISKSAKDKPSS 240
           +F+GYPK +R   FYDP++NKVFVS N TFLEEDHIR+H+PRSK+VLNE+SK   +    
Sbjct: 560 LFVGYPKGTRGGYFYDPKDNKVFVSTNATFLEEDHIREHKPRSKIVLNELSKETTE---P 619

Query: 241 STKIVDK 248
           ST++V++
Sbjct: 620 STRVVEE 623

[Close]

BLAST of Cmc10g0277491 vs. NCBI nr
Match: TYK15984.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 352.8 bits (904), Expect = 2.4e-93
Identity = 176/251 (70.12%), Postives = 208/251 (82.87%), Query Frame = 0


Query: 1   MNVKTQGGYKYFISFIDDYSRYGHVYLVHHKSDSLEKFKEYKAEVENELVKTIKKLRSDR 60
           MNVK +G ++YFISFIDDYSRYG++YL+ HKS++LEKFKEYKAEVEN L K IK LRSDR
Sbjct: 28  MNVKARGSFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKILRSDR 87

Query: 61  GEEYMDLRFQNYLIEREIQSQLSASSTSQQNGISERRNQTLLDMVRFMMSFAQLLDSFWG 120
           G EYMDLRFQ+Y+IE  IQSQLSA  T QQNG+SERRN+TLLDMV  MMS+AQL  SFWG
Sbjct: 88  GGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVHSMMSYAQLPSSFWG 147

Query: 121 YALETAIYILNNVPSKSISKIPYELCKEHKGSLRHFRIWGCPTHVLVQNPKKLEHRSKLC 180
           YA+ETA++ILNNVPSKS+SKIP+EL +  K SL HFRIWGCP HVLV NPKKLE RS+LC
Sbjct: 148 YAVETAVHILNNVPSKSVSKIPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLC 207

Query: 181 VFIGYPKESRDSLFYDPQENKVFVSKNVTFLEEDHIRDHQPRSKLVLNEISKSAKDKPSS 240
            F+GYPKE+R  LF+DPQEN+VFVS N TFLEEDH+R+H+PRSKLVL+E +         
Sbjct: 208 QFVGYPKETRGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRSKLVLSEAT-------DE 267

Query: 241 STKIVDKTKQS 252
           ST++VD+   S
Sbjct: 268 STRVVDEVGPS 271

[Close]

BLAST of Cmc10g0277491 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 6.9e-35
Identity = 90/261 (34.48%), Postives = 143/261 (54.79%), Query Frame = 0


Query: 1   MNVKTQGGYKYFISFIDDYSRYGHVYLVHHKSDSLEKFKEYKAEVENELVKTIKKLRSDR 60
           M +++ GG KYF++FIDD SR   VY++  K    + F+++ A VE E  + +K+LRSD 
Sbjct: 492 MEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDN 551

Query: 61  GEEYMDLRFQNYLIEREIQSQLSASSTSQQNGISERRNQTLLDMVRFMMSFAQLLDSFWG 120
           G EY    F+ Y     I+ + +   T Q NG++ER N+T+++ VR M+  A+L  SFWG
Sbjct: 552 GGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWG 611

Query: 121 YALETAIYILNNVPSKSIS-KIPYELCKEHKGSLRHFRIWGCP--THVLVQNPKKLEHRS 180
            A++TA Y++N  PS  ++ +IP  +    + S  H +++GC    HV  +   KL+ +S
Sbjct: 612 EAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCRAFAHVPKEQRTKLDDKS 671

Query: 181 KLCVFIGYPKESRDSLFYDPQENKVFVSKNVTFLEEDHIRDHQPRSKLVLNEI------S 240
             C+FIGY  E      +DP + KV  S++V F  E  +R     S+ V N I       
Sbjct: 672 IPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVF-RESEVRTAADMSEKVKNGIIPNFVTI 731

Query: 241 KSAKDKPSSSTKIVDKTKQSG 253
            S  + P+S+    D+  + G
Sbjct: 732 PSTSNNPTSAESTTDEVSEQG 751

[Close]

BLAST of Cmc10g0277491 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 125.2 bits (313), Expect = 1.1e-27
Identity = 75/241 (31.12%), Postives = 132/241 (54.77%), Query Frame = 0


Query: 11  YFISFIDDYSRYGHVYLVHHKSDSLEKFKEYKAEVENELVKTIKKLRSDRGEEYMDLRFQ 70
           YF+ F+D ++ Y   YL+ +KSD    F+++ A+ E      +  L  D G EY+    +
Sbjct: 502 YFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMR 561

Query: 71  NYLIEREIQSQLSASSTSQQNGISERRNQTLLDMVRFMMSFAQLLDSFWGYALETAIYIL 130
            + +++ I   L+   T Q NG+SER  +T+ +  R M+S A+L  SFWG A+ TA Y++
Sbjct: 562 QFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLI 621

Query: 131 NNVPSKSI---SKIPYELCKEHKGSLRHFRIWGCPTHVLVQNPK-KLEHRSKLCVFIGYP 190
           N +PS+++   SK PYE+    K  L+H R++G   +V ++N + K + +S   +F+GY 
Sbjct: 622 NRIPSRALVDSSKTPYEMWHNKKPYLKHLRVFGATVYVHIKNKQGKFDDKSFKSIFVGY- 681

Query: 191 KESRDSLFYDPQENKVFVSKNVTFLEEDHIRDHQPRSKLVLNEISKSAKDK--PSSSTKI 246
            E      +D    K  V+++V   E + +     + + V  + SK +++K  P+ S KI
Sbjct: 682 -EPNGFKLWDAVNEKFIVARDVVVDETNMVNSRAVKFETVFLKDSKESENKNFPNDSRKI 740

[Close]

BLAST of Cmc10g0277491 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.7e-20
Identity = 60/207 (28.99%), Postives = 111/207 (53.62%), Query Frame = 0


Query: 9   YKYFISFIDDYSRYGHVYLVHHKSDSLEKFKEYKAEVENELVKTIKKLRSDRGEEYMDLR 68
           Y+Y++ F+D ++RY  +Y +  KS   + F  +K+ VEN     I  L SD G E++ LR
Sbjct: 521 YRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEFVVLR 580

Query: 69  FQNYLIEREIQSQLSASSTSQQNGISERRNQTLLDMVRFMMSFAQLLDSFWGYALETAIY 128
             +YL +  I    S   T + NG+SER+++ +++M   ++S A +  ++W YA   A+Y
Sbjct: 581 --DYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLSHASVPKTYWPYAFSVAVY 640

Query: 129 ILNNVPSKSIS-KIPYELCKEHKGSLRHFRIWGCPTHVLVQ--NPKKLEHRSKLCVFIGY 188
           ++N +P+  +  + P++       +    +++GC  +  ++  N  KLE +SK C F+GY
Sbjct: 641 LINRLPTPLLQLQSPFQKLFGQPPNYEKLKVFGCACYPWLRPYNRHKLEDKSKQCAFMGY 700

Query: 189 PKESRDSLFYDPQENKVFVSKNVTFLE 213
                  L       +++ S++V F E
Sbjct: 701 SLTQSAYLCLHIPTGRLYTSRHVQFDE 725

[Close]

BLAST of Cmc10g0277491 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.4e-19
Identity = 57/213 (26.76%), Postives = 111/213 (52.11%), Query Frame = 0


Query: 3   VKTQGGYKYFISFIDDYSRYGHVYLVHHKSDSLEKFKEYKAEVENELVKTIKKLRSDRGE 62
           + +   Y+Y++ F+D ++RY  +Y +  KS   E F  +K  +EN     I    SD G 
Sbjct: 536 ILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTRIGTFYSDNGG 595

Query: 63  EYMDLRFQNYLIEREIQSQLSASSTSQQNGISERRNQTLLDMVRFMMSFAQLLDSFWGYA 122
           E++ L    Y  +  I    S   T + NG+SER+++ +++    ++S A +  ++W YA
Sbjct: 596 EFVAL--WEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHASIPKTYWPYA 655

Query: 123 LETAIYILNNVPSKSIS-KIPYELCKEHKGSLRHFRIWGCPTHVLVQ--NPKKLEHRSKL 182
              A+Y++N +P+  +  + P++       +    R++GC  +  ++  N  KL+ +S+ 
Sbjct: 656 FAVAVYLINRLPTPLLQLESPFQKLFGTSPNYDKLRVFGCACYPWLRPYNQHKLDDKSRQ 715

Query: 183 CVFIGYPKESRDSLFYDPQENKVFVSKNVTFLE 213
           CVF+GY       L    Q +++++S++V F E
Sbjct: 716 CVFLGYSLTQSAYLCLHLQTSRLYISRHVRFDE 746

[Close]

BLAST of Cmc10g0277491 vs. ExPASy Swiss-Prot
Match: P0C2J7 (Transposon Ty4-H Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY4B-H PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.7e-09
Identity = 49/204 (24.02%), Postives = 95/204 (46.57%), Query Frame = 0


Query: 10  KYFISFIDDYSRYGHVYLVHHKSDS--LEKFKEYKAEVENELVKTIKKLRSDRGEEYMDL 69
           +Y +  +D+ +RY       +K+    L + ++    VE +  + ++++ SDRG E+ + 
Sbjct: 644 RYMLIMVDNNTRYCMTSTHFNKNAETILAQIRKNIQYVETQFDRKVREINSDRGTEFTND 703

Query: 70  RFQNYLIEREIQSQLSASSTSQQNGISERRNQTLLDMVRFMMSFAQLLDSFWGYALETAI 129
           + + Y I + I   L+++     NG +ER  +T++     ++  + L   FW YA+ +A 
Sbjct: 704 QIEEYFISKGIHHILTSTQDHAANGRAERYIRTIVTDATTLLRQSNLRVKFWEYAVTSAT 763

Query: 130 YILNNVPSKSISKIPYELCKEHKGSLR--HFRIWGCPTHVLVQNPKKLEHRSKLCVFIGY 189
            I N +  KS  K+P +       ++R   F  +G    +   N KKL+      + +  
Sbjct: 764 NIRNCLEHKSTGKLPLKAISRQPVTVRLMSFLPFGEKGIIWNHNHKKLKPSGLPSIILCK 823

Query: 190 PKESRDSLFYDPQENKVFVSKNVT 210
              S    F+ P +NK+  S N T
Sbjct: 824 DPNSYGYKFFIPSKNKIVTSDNYT 847

[Close]

BLAST of Cmc10g0277491 vs. ExPASy TrEMBL
Match: A0A5D3E496 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold343G00560 PE=4 SV=1)

HSP 1 Score: 401.7 bits (1031), Expect = 2.2e-108
Identity = 199/252 (78.97%), Postives = 220/252 (87.30%), Query Frame = 0


Query: 1   MNVKTQGGYKYFISFIDDYSRYGHVYLVHHKSDSLEKFKEYKAEVENELVKTIKKLRSDR 60
           MNVK QGGY+YFISFIDDYSRYG++YL+ +KSDS EKFKEYKAEVENE  KTIK LRSDR
Sbjct: 1   MNVKAQGGYEYFISFIDDYSRYGYIYLIQNKSDSFEKFKEYKAEVENESGKTIKTLRSDR 60

Query: 61  GEEYMDLRFQNYLIEREIQSQLSASSTSQQNGISERRNQTLLDMVRFMMSFAQLLDSFWG 120
           GEEYMDLRFQ+YLIE  IQSQLSA +T QQNG+SERRN+ LLDMVR M SFAQL DSFWG
Sbjct: 61  GEEYMDLRFQDYLIEHRIQSQLSAPNTPQQNGVSERRNRALLDMVRSMTSFAQLPDSFWG 120

Query: 121 YALETAIYILNNVPSKSISKIPYELCKEHKGSLRHFRIWGCPTHVLVQNPKKLEHRSKLC 180
           YALET IYILNNVPSKS+S+ PYEL K  KGSLRHFRIWGCP+HVLVQNP KLEHRSKLC
Sbjct: 121 YALETTIYILNNVPSKSVSETPYELWKGRKGSLRHFRIWGCPSHVLVQNPNKLEHRSKLC 180

Query: 181 VFIGYPKESRDSLFYDPQENKVFVSKNVTFLEEDHIRDHQPRSKLVLNEISKSAKDKPSS 240
           +F+GYPKES+  LFYDPQENKVFVS N TFLEE HIR+HQ R+KLVL EISK+  D+PSS
Sbjct: 181 LFVGYPKESKGGLFYDPQENKVFVSINATFLEEYHIRNHQTRNKLVLEEISKNGTDRPSS 240

Query: 241 STKIVDKTKQSG 253
            TK+VDKT+  G
Sbjct: 241 PTKVVDKTRNIG 252

[Close]

BLAST of Cmc10g0277491 vs. ExPASy TrEMBL
Match: E2GK51 (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)

HSP 1 Score: 394.4 bits (1012), Expect = 3.5e-106
Identity = 197/251 (78.49%), Postives = 219/251 (87.25%), Query Frame = 0


Query: 1   MNVKTQGGYKYFISFIDDYSRYGHVYLVHHKSDSLEKFKEYKAEVENELVKTIKKLRSDR 60
           MNVK +GGY+YFISFIDD+SRYGHVYL+HHKS+S EKFKEYKAEVENE+ KTIK LRSDR
Sbjct: 512 MNVKARGGYEYFISFIDDFSRYGHVYLLHHKSESFEKFKEYKAEVENEIGKTIKTLRSDR 571

Query: 61  GEEYMDLRFQNYLIEREIQSQLSASSTSQQNGISERRNQTLLDMVRFMMSFAQLLDSFWG 120
           G EYMD +FQ+YLIE  IQSQLSA ST QQNG+SERRN+TLLDMVR MMS+AQL DSFWG
Sbjct: 572 GGEYMDSKFQDYLIEFGIQSQLSAPSTPQQNGVSERRNRTLLDMVRSMMSYAQLPDSFWG 631

Query: 121 YALETAIYILNNVPSKSISKIPYELCKEHKGSLRHFRIWGCPTHVLVQNPKKLEHRSKLC 180
           YALETAI+ILNNVPSKS+ + PYEL K  K SLR+FRIWGCP HVLVQNPKKLE RSKLC
Sbjct: 632 YALETAIHILNNVPSKSVLETPYELWKGRKSSLRYFRIWGCPAHVLVQNPKKLEPRSKLC 691

Query: 181 VFIGYPKESRDSLFYDPQENKVFVSKNVTFLEEDHIRDHQPRSKLVLNEISKSAKDKPSS 240
           +F+GYPKESR  LFY PQENKVFVS N TFLEEDH R+HQPRSK+VL E+ K+A DKPSS
Sbjct: 692 LFVGYPKESRGGLFYHPQENKVFVSTNATFLEEDHXRNHQPRSKIVLKEMFKNATDKPSS 751

Query: 241 STKIVDKTKQS 252
           STK+VDK   S
Sbjct: 752 STKVVDKANIS 762

[Close]

BLAST of Cmc10g0277491 vs. ExPASy TrEMBL
Match: A0A5D3DRU1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00320 PE=4 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 1.3e-97
Identity = 188/252 (74.60%), Postives = 201/252 (79.76%), Query Frame = 0


Query: 1   MNVKTQGGYKYFISFIDDYSRYGHVYLVHHKSDSLEKFKEYKAEVENELVKTIKKLRSDR 60
           MNVK +GGYKYFISFIDDYSRY HVYL+HHKSDS E FKEYK EVENEL           
Sbjct: 28  MNVKARGGYKYFISFIDDYSRYNHVYLIHHKSDSFENFKEYKVEVENEL----------- 87

Query: 61  GEEYMDLRFQNYLIEREIQSQLSASSTSQQNGISERRNQTLLDMVRFMMSFAQLLDSFWG 120
                         E EIQSQLSA ST QQNG+ ERRN+TLLDMVR MM+FAQL DSFWG
Sbjct: 88  --------------EHEIQSQLSAPSTPQQNGVLERRNRTLLDMVRSMMNFAQLPDSFWG 147

Query: 121 YALETAIYILNNVPSKSISKIPYELCKEHKGSLRHFRIWGCPTHVLVQNPKKLEHRSKLC 180
           YALET++YILNNVP KS+S+ PYEL K  KGSLRHFRIWGCPTHVLVQNPKKLEHRSKLC
Sbjct: 148 YALETSVYILNNVPFKSVSETPYELWKGRKGSLRHFRIWGCPTHVLVQNPKKLEHRSKLC 207

Query: 181 VFIGYPKESRDSLFYDPQENKVFVSKNVTFLEEDHIRDHQPRSKLVLNEISKSAKDKPSS 240
           +F+GYPKESR  LFYDPQENKVFVS N  FLEEDHIRDHQ RSKLVLNEI KSA +K SS
Sbjct: 208 LFVGYPKESRGGLFYDPQENKVFVSTNSIFLEEDHIRDHQARSKLVLNEIFKSATNKSSS 254

Query: 241 STKIVDKTKQSG 253
           STK+VDKTK SG
Sbjct: 268 STKVVDKTKVSG 254

[Close]

BLAST of Cmc10g0277491 vs. ExPASy TrEMBL
Match: A0A5A7SNP8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G002160 PE=4 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 5.2e-94
Identity = 173/247 (70.04%), Postives = 207/247 (83.81%), Query Frame = 0


Query: 1   MNVKTQGGYKYFISFIDDYSRYGHVYLVHHKSDSLEKFKEYKAEVENELVKTIKKLRSDR 60
           MNVK +GG++YFI+F DDYSRYG+VYL+ HKS++LEKFKEYKAEVEN L KTIK  RSDR
Sbjct: 380 MNVKARGGFEYFITFTDDYSRYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSDR 439

Query: 61  GEEYMDLRFQNYLIEREIQSQLSASSTSQQNGISERRNQTLLDMVRFMMSFAQLLDSFWG 120
           G EYMDL+FQNYL+E  I SQLSA  T QQNG+SERRN+TLLDMVR MMS+A L +SFWG
Sbjct: 440 GGEYMDLKFQNYLMECGIVSQLSAPDTPQQNGVSERRNRTLLDMVRSMMSYAHLPNSFWG 499

Query: 121 YALETAIYILNNVPSKSISKIPYELCKEHKGSLRHFRIWGCPTHVLVQNPKKLEHRSKLC 180
           YA++TA+YILN VPSKS+S+ P +L   HKGSLRHFRIWGCP HVL  NPKKLE RSKLC
Sbjct: 500 YAVQTAVYILNCVPSKSVSETPLKLWNGHKGSLRHFRIWGCPAHVLENNPKKLEPRSKLC 559

Query: 181 VFIGYPKESRDSLFYDPQENKVFVSKNVTFLEEDHIRDHQPRSKLVLNEISKSAKDKPSS 240
           +F+GYPK +R   FYDP++NKVFVS N TFLEEDHIR+H+PRSK+VLNE+SK   +    
Sbjct: 560 LFVGYPKGTRGGYFYDPKDNKVFVSTNATFLEEDHIREHKPRSKIVLNELSKETTE---P 619

Query: 241 STKIVDK 248
           ST++V++
Sbjct: 620 STRVVEE 623

[Close]

BLAST of Cmc10g0277491 vs. ExPASy TrEMBL
Match: A0A5D3CYF4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G001110 PE=4 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 1.2e-93
Identity = 176/251 (70.12%), Postives = 208/251 (82.87%), Query Frame = 0


Query: 1   MNVKTQGGYKYFISFIDDYSRYGHVYLVHHKSDSLEKFKEYKAEVENELVKTIKKLRSDR 60
           MNVK +G ++YFISFIDDYSRYG++YL+ HKS++LEKFKEYKAEVEN L K IK LRSDR
Sbjct: 28  MNVKARGSFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKILRSDR 87

Query: 61  GEEYMDLRFQNYLIEREIQSQLSASSTSQQNGISERRNQTLLDMVRFMMSFAQLLDSFWG 120
           G EYMDLRFQ+Y+IE  IQSQLSA  T QQNG+SERRN+TLLDMV  MMS+AQL  SFWG
Sbjct: 88  GGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVHSMMSYAQLPSSFWG 147

Query: 121 YALETAIYILNNVPSKSISKIPYELCKEHKGSLRHFRIWGCPTHVLVQNPKKLEHRSKLC 180
           YA+ETA++ILNNVPSKS+SKIP+EL +  K SL HFRIWGCP HVLV NPKKLE RS+LC
Sbjct: 148 YAVETAVHILNNVPSKSVSKIPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLC 207

Query: 181 VFIGYPKESRDSLFYDPQENKVFVSKNVTFLEEDHIRDHQPRSKLVLNEISKSAKDKPSS 240
            F+GYPKE+R  LF+DPQEN+VFVS N TFLEEDH+R+H+PRSKLVL+E +         
Sbjct: 208 QFVGYPKETRGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRSKLVLSEAT-------DE 267

Query: 241 STKIVDKTKQS 252
           ST++VD+   S
Sbjct: 268 STRVVDEVGPS 271

The following BLAST results are available for this feature:

BLAST of Cmc10g0277491 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK30724.1	4.5e-108	78.97	gag/pol protein [Cucumis melo var. makuwa]	[more]
ADJ18449.1	7.2e-106	78.49	gag/pol protein, partial [Bryonia dioica]	[more]
KAA0059681.1	2.7e-97	74.60	gag/pol protein [Cucumis melo var. makuwa] >TYK26119.1 gag/pol protein [Cucumis ...	[more]
KAA0026233.1	1.1e-93	70.04	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK15984.1	2.4e-93	70.12	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc10g0277491 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	6.9e-35	34.48	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.1e-27	31.12	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	1.7e-20	28.99	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.4e-19	26.76	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P0C2J7	1.7e-09	24.02	Transposon Ty4-H Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc10g0277491 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E496	2.2e-108	78.97	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold343G0056...	[more]
E2GK51	3.5e-106	78.49	Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1	[more]
A0A5D3DRU1	1.3e-97	74.60	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G0032...	[more]
A0A5A7SNP8	5.2e-94	70.04	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G00216...	[more]
A0A5D3CYF4	1.2e-93	70.12	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00111...	[more]

BLAST of Cmc10g0277491 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 35..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 229..252
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 233..252
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 2..221
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..147 e-value: 4.2E-30 score: 106.6
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..150 score: 17.731518
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 4..148

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc10g0277491.1	Cmc10g0277491.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding