Cmc10g0277311 (gene) Melon (Charmono) v1.1

Overview
NameCmc10g0277311
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag-pol polyprotein
LocationCMiso1.1chr10: 13006522 .. 13006962 (+)
RNA-Seq ExpressionCmc10g0277311
SyntenyCmc10g0277311
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGTCAGAATTCGAAATGAGTATGGTTGGAGAGCTTTCATGCTTTCTGGGACTTCAAATTAAGCAAAAGAATGATGGCATTTTCATATCTCAGGAAAAGTATGCCAGGAATATGGTCAAAAAGTTTGGTTTGGAACAAGCTCGAAATAAGCGGACTCCAGCTGTGACACATGTTAAACTTACAAAAAACACTGAAGGTGTTGAAGTTGATCACAAACTTTATAGGAGTAAAGTAGCCAACCTATTATACTTAACAGCAAGTCGACCTGACATAGCTTATGCTGTGGGAATATGTGCTTGTTATCAAGCGGATCCCCACATCACTCACCTAGAAGCTGTTAAAGGAATTCTTAAATACGTTCATGGGACCAGTGACTTTGGAATGATGTATTCTTATGATACCACCCCCACTCTAGTTGGATATTGTGATGCTGACTAG

mRNA sequence

ATGCAGTCAGAATTCGAAATGAGTATGGTTGGAGAGCTTTCATGCTTTCTGGGACTTCAAATTAAGCAAAAGAATGATGGCATTTTCATATCTCAGGAAAAGTATGCCAGGAATATGGTCAAAAAGTTTGGTTTGGAACAAGCTCGAAATAAGCGGACTCCAGCTGTGACACATGTTAAACTTACAAAAAACACTGAAGGTGTTGAAGTTGATCACAAACTTTATAGGAGTAAAGTAGCCAACCTATTATACTTAACAGCAAGTCGACCTGACATAGCTTATGCTGTGGGAATATGTGCTTGTTATCAAGCGGATCCCCACATCACTCACCTAGAAGCTGTTAAAGGAATTCTTAAATACGTTCATGGGACCAGTGACTTTGGAATGATGTATTCTTATGATACCACCCCCACTCTAGTTGGATATTGTGATGCTGACTAG

Coding sequence (CDS)

ATGCAGTCAGAATTCGAAATGAGTATGGTTGGAGAGCTTTCATGCTTTCTGGGACTTCAAATTAAGCAAAAGAATGATGGCATTTTCATATCTCAGGAAAAGTATGCCAGGAATATGGTCAAAAAGTTTGGTTTGGAACAAGCTCGAAATAAGCGGACTCCAGCTGTGACACATGTTAAACTTACAAAAAACACTGAAGGTGTTGAAGTTGATCACAAACTTTATAGGAGTAAAGTAGCCAACCTATTATACTTAACAGCAAGTCGACCTGACATAGCTTATGCTGTGGGAATATGTGCTTGTTATCAAGCGGATCCCCACATCACTCACCTAGAAGCTGTTAAAGGAATTCTTAAATACGTTCATGGGACCAGTGACTTTGGAATGATGTATTCTTATGATACCACCCCCACTCTAGTTGGATATTGTGATGCTGACTAG

Protein sequence

MQSEFEMSMVGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKRTPAVTHVKLTKNTEGVEVDHKLYRSKVANLLYLTASRPDIAYAVGICACYQADPHITHLEAVKGILKYVHGTSDFGMMYSYDTTPTLVGYCDAD
Homology
BLAST of Cmc10g0277311 vs. NCBI nr
Match: TYK08028.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 272.7 bits (696), Expect = 1.8e-69
Identity = 133/146 (91.10%), Postives = 138/146 (94.52%), Query Frame = 0

Query: 1   MQSEFEMSMVGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKRTPAVTHVK 60
           MQSEF+MSM+GELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKRTPA THVK
Sbjct: 257 MQSEFKMSMIGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKRTPAATHVK 316

Query: 61  LTKNTEGVEVDHKLYRSKVANLLYLTASRPDIAYAVGICACYQADPHITHLEAVKGILKY 120
           LTK+T G EVDHKLYRS V +LLYLTASRPDIAYA+GICA YQADPHITHLE VK ILKY
Sbjct: 317 LTKDTGGAEVDHKLYRSIVGSLLYLTASRPDIAYAMGICARYQADPHITHLEVVKRILKY 376

Query: 121 VHGTSDFGMMYSYDTTPTLVGYCDAD 147
           VHGTSDFGMMYSYDTTPTLVGYCDAD
Sbjct: 377 VHGTSDFGMMYSYDTTPTLVGYCDAD 402

BLAST of Cmc10g0277311 vs. NCBI nr
Match: KAA0048226.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 272.7 bits (696), Expect = 1.8e-69
Identity = 133/146 (91.10%), Postives = 138/146 (94.52%), Query Frame = 0

Query: 1   MQSEFEMSMVGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKRTPAVTHVK 60
           MQSEF+MSM+GELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKRTPA THVK
Sbjct: 76  MQSEFKMSMIGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKRTPAATHVK 135

Query: 61  LTKNTEGVEVDHKLYRSKVANLLYLTASRPDIAYAVGICACYQADPHITHLEAVKGILKY 120
           LTK+T G EVDHKLYRS V +LLYLTASRPDIAYA+GICA YQADPHITHLE VK ILKY
Sbjct: 136 LTKDTGGAEVDHKLYRSIVGSLLYLTASRPDIAYAMGICARYQADPHITHLEVVKRILKY 195

Query: 121 VHGTSDFGMMYSYDTTPTLVGYCDAD 147
           VHGTSDFGMMYSYDTTPTLVGYCDAD
Sbjct: 196 VHGTSDFGMMYSYDTTPTLVGYCDAD 221

BLAST of Cmc10g0277311 vs. NCBI nr
Match: KAA0042994.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 266.5 bits (680), Expect = 1.3e-67
Identity = 132/146 (90.41%), Postives = 138/146 (94.52%), Query Frame = 0

Query: 1   MQSEFEMSMVGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKRTPAVTHVK 60
           MQSEFEMSMVGEL CFLGLQIKQKNDGIFISQEKYAR+MVKKFGLEQA+NKRTPAVTHVK
Sbjct: 108 MQSEFEMSMVGELLCFLGLQIKQKNDGIFISQEKYARSMVKKFGLEQAQNKRTPAVTHVK 167

Query: 61  LTKNTEGVEVDHKLYRSKVANLLYLTASRPDIAYAVGICACYQADPHITHLEAVKGILKY 120
           LTK+TEG EVDHKLYRS V +LLYLTASR DIAYAVGICA YQADP ITHLEAVK ILKY
Sbjct: 168 LTKDTEGAEVDHKLYRSIVGSLLYLTASRLDIAYAVGICARYQADPRITHLEAVKRILKY 227

Query: 121 VHGTSDFGMMYSYDTTPTLVGYCDAD 147
           +HGTSDFGMMYSY+TTPTLVGYCDAD
Sbjct: 228 IHGTSDFGMMYSYNTTPTLVGYCDAD 253

BLAST of Cmc10g0277311 vs. NCBI nr
Match: KAA0042298.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 266.5 bits (680), Expect = 1.3e-67
Identity = 129/146 (88.36%), Postives = 137/146 (93.84%), Query Frame = 0

Query: 1   MQSEFEMSMVGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKRTPAVTHVK 60
           MQSEFE SMVGE SCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKRTPA THV 
Sbjct: 569 MQSEFETSMVGEFSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKRTPAATHVI 628

Query: 61  LTKNTEGVEVDHKLYRSKVANLLYLTASRPDIAYAVGICACYQADPHITHLEAVKGILKY 120
           LTK+T+G +VDHKLY+S V +LLYLTA+RPDIAYA+GICA YQADPHITHLEAVK ILKY
Sbjct: 629 LTKDTKGAKVDHKLYKSIVGSLLYLTANRPDIAYAIGICARYQADPHITHLEAVKRILKY 688

Query: 121 VHGTSDFGMMYSYDTTPTLVGYCDAD 147
           VHGTSDFGMMYSYDTTPT+VGYCDAD
Sbjct: 689 VHGTSDFGMMYSYDTTPTIVGYCDAD 714

BLAST of Cmc10g0277311 vs. NCBI nr
Match: KAA0053137.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK01543.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 266.2 bits (679), Expect = 1.7e-67
Identity = 132/146 (90.41%), Postives = 135/146 (92.47%), Query Frame = 0

Query: 1   MQSEFEMSMVGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKRTPAVTHVK 60
           MQSEFEMSMVGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGL+QARNKRTPA THVK
Sbjct: 640 MQSEFEMSMVGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLKQARNKRTPAATHVK 699

Query: 61  LTKNTEGVEVDHKLYRSKVANLLYLTASRPDIAYAVGICACYQADPHITHLEAVKGILKY 120
           LTK+TEG EVDHKLYRS V +LLYLTASRPDIAY VGICA YQADP IT LE VK ILKY
Sbjct: 700 LTKDTEGAEVDHKLYRSIVGSLLYLTASRPDIAYVVGICARYQADPRITQLEVVKRILKY 759

Query: 121 VHGTSDFGMMYSYDTTPTLVGYCDAD 147
           VHGTSDFGMMYSYDTT TLVGYCDAD
Sbjct: 760 VHGTSDFGMMYSYDTTSTLVGYCDAD 785

BLAST of Cmc10g0277311 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.2e-16
Identity = 52/155 (33.55%), Postives = 87/155 (56.13%), Query Frame = 0

Query: 1    MQSEFEMSMVGELSCFLGLQIKQKNDG--IFISQEKYARNMVKKFGLEQARNKRTPAVTH 60
            +   F+M  +G     LG++I ++     +++SQEKY   ++++F ++ A+   TP   H
Sbjct: 1029 LSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGH 1088

Query: 61   VKLTKNTEGVEVDHK------LYRSKVANLLY-LTASRPDIAYAVGICACYQADPHITHL 120
            +KL+K      V+ K       Y S V +L+Y +  +RPDIA+AVG+ + +  +P   H 
Sbjct: 1089 LKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHW 1148

Query: 121  EAVKGILKYVHGTSDFGMMYSYDTTPTLVGYCDAD 147
            EAVK IL+Y+ GT+   + +   + P L GY DAD
Sbjct: 1149 EAVKWILRYLRGTTGDCLCFG-GSDPILKGYTDAD 1182

BLAST of Cmc10g0277311 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.6e-15
Identity = 48/146 (32.88%), Postives = 76/146 (52.05%), Query Frame = 0

Query: 1   MQSEFEMSMVGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKRTPAVTHVK 60
           + S F M  +G +  FLG+QIK    G+F+SQ KYA  ++   G+   +   TP    + 
Sbjct: 27  LSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLPLKLN 86

Query: 61  LTKNTEGVEVDHKLYRSKVANLLYLTASRPDIAYAVGICACYQADPHITHLEAVKGILKY 120
            + +T     D   +RS V  L YLT +RPDI+YAV I      +P +   + +K +L+Y
Sbjct: 87  SSVSTAKYP-DPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRY 146

Query: 121 VHGTSDFGMMYSYDTTPTLVGYCDAD 147
           V GT   G+    ++   +  +CD+D
Sbjct: 147 VKGTIFHGLYIHKNSKLNVQAFCDSD 171

BLAST of Cmc10g0277311 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 7.9e-15
Identity = 47/146 (32.19%), Postives = 75/146 (51.37%), Query Frame = 0

Query: 1    MQSEFEMSMVGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKRTPAVTHVK 60
            +   F +    +L  FLG++ K+   G+ +SQ +Y  +++ +  +  A+   TP  T  K
Sbjct: 1154 LSQRFSVKEHEDLHYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPK 1213

Query: 61   LTKNTEGVEVDHKLYRSKVANLLYLTASRPDIAYAVGICACYQADPHITHLEAVKGILKY 120
            LT ++     D   YR  V +L YL  +RPD++YAV   + Y   P   H  A+K +L+Y
Sbjct: 1214 LTLHSGTKLPDPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRY 1273

Query: 121  VHGTSDFGMMYSYDTTPTLVGYCDAD 147
            + GT D G+      T +L  Y DAD
Sbjct: 1274 LAGTPDHGIFLKKGNTLSLHAYSDAD 1299

BLAST of Cmc10g0277311 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 8.7e-14
Identity = 47/146 (32.19%), Postives = 75/146 (51.37%), Query Frame = 0

Query: 1    MQSEFEMSMVGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKRTPAVTHVK 60
            +   F +    EL  FLG++ K+   G+ +SQ +Y  +++ +  +  A+   TP     K
Sbjct: 1171 LSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPK 1230

Query: 61   LTKNTEGVEVDHKLYRSKVANLLYLTASRPDIAYAVGICACYQADPHITHLEAVKGILKY 120
            L+  +     D   YR  V +L YL  +RPDI+YAV   + +   P   HL+A+K IL+Y
Sbjct: 1231 LSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRY 1290

Query: 121  VHGTSDFGMMYSYDTTPTLVGYCDAD 147
            + GT + G+      T +L  Y DAD
Sbjct: 1291 LAGTPNHGIFLKKGNTLSLHAYSDAD 1316

BLAST of Cmc10g0277311 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 65.1 bits (157), Expect = 7.6e-10
Identity = 41/143 (28.67%), Postives = 69/143 (48.25%), Query Frame = 0

Query: 5   FEMSMVGELSCFLGLQIKQKNDG-IFISQEKYARNMVKKFGLEQARNKRTPAVTHVKLTK 64
           + M  +G++  FLGL I Q ++G I +S + Y      +  +   +  +TP      L +
Sbjct: 112 YSMKDLGKVDKFLGLNIHQSSNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFE 171

Query: 65  NTEGVEVDHKLYRSKVANLLY-LTASRPDIAYAVGICACYQADPHITHLEAVKGILKYVH 124
            T     D   Y+S V  LL+     RPDI+Y V + + +  +P   HLE+ + +L+Y++
Sbjct: 172 TTSPHLKDITPYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLY 231

Query: 125 GTSDFGMMYSYDTTPTLVGYCDA 146
            T    + Y   +   L  YCDA
Sbjct: 232 TTRSMCLKYRSGSQLALTVYCDA 254

BLAST of Cmc10g0277311 vs. ExPASy TrEMBL
Match: A0A5D3CA21 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G001740 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 8.9e-70
Identity = 133/146 (91.10%), Postives = 138/146 (94.52%), Query Frame = 0

Query: 1   MQSEFEMSMVGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKRTPAVTHVK 60
           MQSEF+MSM+GELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKRTPA THVK
Sbjct: 257 MQSEFKMSMIGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKRTPAATHVK 316

Query: 61  LTKNTEGVEVDHKLYRSKVANLLYLTASRPDIAYAVGICACYQADPHITHLEAVKGILKY 120
           LTK+T G EVDHKLYRS V +LLYLTASRPDIAYA+GICA YQADPHITHLE VK ILKY
Sbjct: 317 LTKDTGGAEVDHKLYRSIVGSLLYLTASRPDIAYAMGICARYQADPHITHLEVVKRILKY 376

Query: 121 VHGTSDFGMMYSYDTTPTLVGYCDAD 147
           VHGTSDFGMMYSYDTTPTLVGYCDAD
Sbjct: 377 VHGTSDFGMMYSYDTTPTLVGYCDAD 402

BLAST of Cmc10g0277311 vs. ExPASy TrEMBL
Match: A0A5A7U1W9 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G001410 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 8.9e-70
Identity = 133/146 (91.10%), Postives = 138/146 (94.52%), Query Frame = 0

Query: 1   MQSEFEMSMVGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKRTPAVTHVK 60
           MQSEF+MSM+GELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKRTPA THVK
Sbjct: 76  MQSEFKMSMIGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKRTPAATHVK 135

Query: 61  LTKNTEGVEVDHKLYRSKVANLLYLTASRPDIAYAVGICACYQADPHITHLEAVKGILKY 120
           LTK+T G EVDHKLYRS V +LLYLTASRPDIAYA+GICA YQADPHITHLE VK ILKY
Sbjct: 136 LTKDTGGAEVDHKLYRSIVGSLLYLTASRPDIAYAMGICARYQADPHITHLEVVKRILKY 195

Query: 121 VHGTSDFGMMYSYDTTPTLVGYCDAD 147
           VHGTSDFGMMYSYDTTPTLVGYCDAD
Sbjct: 196 VHGTSDFGMMYSYDTTPTLVGYCDAD 221

BLAST of Cmc10g0277311 vs. ExPASy TrEMBL
Match: A0A5A7THK0 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold824G00940 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 6.4e-68
Identity = 129/146 (88.36%), Postives = 137/146 (93.84%), Query Frame = 0

Query: 1   MQSEFEMSMVGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKRTPAVTHVK 60
           MQSEFE SMVGE SCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKRTPA THV 
Sbjct: 569 MQSEFETSMVGEFSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKRTPAATHVI 628

Query: 61  LTKNTEGVEVDHKLYRSKVANLLYLTASRPDIAYAVGICACYQADPHITHLEAVKGILKY 120
           LTK+T+G +VDHKLY+S V +LLYLTA+RPDIAYA+GICA YQADPHITHLEAVK ILKY
Sbjct: 629 LTKDTKGAKVDHKLYKSIVGSLLYLTANRPDIAYAIGICARYQADPHITHLEAVKRILKY 688

Query: 121 VHGTSDFGMMYSYDTTPTLVGYCDAD 147
           VHGTSDFGMMYSYDTTPT+VGYCDAD
Sbjct: 689 VHGTSDFGMMYSYDTTPTIVGYCDAD 714

BLAST of Cmc10g0277311 vs. ExPASy TrEMBL
Match: A0A5A7TI28 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold75G00680 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 6.4e-68
Identity = 132/146 (90.41%), Postives = 138/146 (94.52%), Query Frame = 0

Query: 1   MQSEFEMSMVGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKRTPAVTHVK 60
           MQSEFEMSMVGEL CFLGLQIKQKNDGIFISQEKYAR+MVKKFGLEQA+NKRTPAVTHVK
Sbjct: 108 MQSEFEMSMVGELLCFLGLQIKQKNDGIFISQEKYARSMVKKFGLEQAQNKRTPAVTHVK 167

Query: 61  LTKNTEGVEVDHKLYRSKVANLLYLTASRPDIAYAVGICACYQADPHITHLEAVKGILKY 120
           LTK+TEG EVDHKLYRS V +LLYLTASR DIAYAVGICA YQADP ITHLEAVK ILKY
Sbjct: 168 LTKDTEGAEVDHKLYRSIVGSLLYLTASRLDIAYAVGICARYQADPRITHLEAVKRILKY 227

Query: 121 VHGTSDFGMMYSYDTTPTLVGYCDAD 147
           +HGTSDFGMMYSY+TTPTLVGYCDAD
Sbjct: 228 IHGTSDFGMMYSYNTTPTLVGYCDAD 253

BLAST of Cmc10g0277311 vs. ExPASy TrEMBL
Match: A0A5D3BPB3 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G001130 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 8.3e-68
Identity = 132/146 (90.41%), Postives = 135/146 (92.47%), Query Frame = 0

Query: 1   MQSEFEMSMVGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKRTPAVTHVK 60
           MQSEFEMSMVGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGL+QARNKRTPA THVK
Sbjct: 640 MQSEFEMSMVGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLKQARNKRTPAATHVK 699

Query: 61  LTKNTEGVEVDHKLYRSKVANLLYLTASRPDIAYAVGICACYQADPHITHLEAVKGILKY 120
           LTK+TEG EVDHKLYRS V +LLYLTASRPDIAY VGICA YQADP IT LE VK ILKY
Sbjct: 700 LTKDTEGAEVDHKLYRSIVGSLLYLTASRPDIAYVVGICARYQADPRITQLEVVKRILKY 759

Query: 121 VHGTSDFGMMYSYDTTPTLVGYCDAD 147
           VHGTSDFGMMYSYDTT TLVGYCDAD
Sbjct: 760 VHGTSDFGMMYSYDTTSTLVGYCDAD 785

BLAST of Cmc10g0277311 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 84.0 bits (206), Expect = 1.1e-16
Identity = 48/146 (32.88%), Postives = 76/146 (52.05%), Query Frame = 0

Query: 1   MQSEFEMSMVGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKRTPAVTHVK 60
           + S F M  +G +  FLG+QIK    G+F+SQ KYA  ++   G+   +   TP    + 
Sbjct: 27  LSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLPLKLN 86

Query: 61  LTKNTEGVEVDHKLYRSKVANLLYLTASRPDIAYAVGICACYQADPHITHLEAVKGILKY 120
            + +T     D   +RS V  L YLT +RPDI+YAV I      +P +   + +K +L+Y
Sbjct: 87  SSVSTAKYP-DPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRY 146

Query: 121 VHGTSDFGMMYSYDTTPTLVGYCDAD 147
           V GT   G+    ++   +  +CD+D
Sbjct: 147 VKGTIFHGLYIHKNSKLNVQAFCDSD 171

BLAST of Cmc10g0277311 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 82.0 bits (201), Expect = 4.3e-16
Identity = 49/145 (33.79%), Postives = 76/145 (52.41%), Query Frame = 0

Query: 1   MQSEFEMSMVGELSCFLGLQIKQKNDGIFISQEKYARNMVKKFGLEQARNKRTPAVTHVK 60
           ++S F++  +G L  FLGL+I +   GI I Q KYA +++ + GL   +    P    V 
Sbjct: 304 LKSCFKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVT 363

Query: 61  LTKNTEGVEVDHKLYRSKVANLLYLTASRPDIAYAVGICACYQADPHITHLEAVKGILKY 120
            + ++ G  VD K YR  +  L+YL  +R DI++AV   + +   P + H +AV  IL Y
Sbjct: 364 FSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHY 423

Query: 121 VHGTSDFGMMYSYDTTPTLVGYCDA 146
           + GT   G+ YS      L  + DA
Sbjct: 424 IKGTVGQGLFYSSQAEMQLQVFSDA 448

BLAST of Cmc10g0277311 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 44.7 bits (104), Expect = 7.6e-05
Identity = 21/64 (32.81%), Postives = 35/64 (54.69%), Query Frame = 0

Query: 83  LYLTASRPDIAYAVGICACYQADPHITHLEAVKGILKYVHGTSDFGMMYSYDTTPTLVGY 142
           +YLT +RPD+ +AV   + + +      ++AV  +L YV GT   G+ YS  +   L  +
Sbjct: 1   MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60

Query: 143 CDAD 147
            D+D
Sbjct: 61  ADSD 64

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK08028.11.8e-6991.10gag-pol polyprotein [Cucumis melo var. makuwa][more]
KAA0048226.11.8e-6991.10gag-pol polyprotein [Cucumis melo var. makuwa][more]
KAA0042994.11.3e-6790.41putative gag-pol polyprotein [Cucumis melo var. makuwa][more]
KAA0042298.11.3e-6788.36gag-pol polyprotein [Cucumis melo var. makuwa][more]
KAA0053137.11.7e-6790.41gag-pol polyprotein [Cucumis melo var. makuwa] >TYK01543.1 gag-pol polyprotein [... [more]
Match NameE-valueIdentityDescription
P109784.2e-1633.55Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P925191.6e-1532.88Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ... [more]
Q9ZT947.9e-1532.19Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
Q94HW28.7e-1432.19Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
P256007.6e-1028.67Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT... [more]
Match NameE-valueIdentityDescription
A0A5D3CA218.9e-7091.10Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G... [more]
A0A5A7U1W98.9e-7091.10Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G0... [more]
A0A5A7THK06.4e-6888.36Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold824G... [more]
A0A5A7TI286.4e-6890.41Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca... [more]
A0A5D3BPB38.3e-6890.41Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G... [more]
Match NameE-valueIdentityDescription
ATMG00810.11.1e-1632.88DNA/RNA polymerases superfamily protein [more]
AT4G23160.14.3e-1633.79cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
ATMG00240.17.6e-0532.81Gag-Pol-related retrotransposon family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 1..55
e-value: 3.2E-9
score: 36.8
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 50..146
NoneNo IPR availablePANTHERPTHR11439:SF308SUBFAMILY NOT NAMEDcoord: 50..146

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc10g0277311.1Cmc10g0277311.1mRNA