Cmc10g0276631 (gene) Melon (Charmono) v1.1

Overview
NameCmc10g0276631
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTy3/gypsy retrotransposon protein
LocationCMiso1.1chr10: 11831164 .. 11831956 (-)
RNA-Seq ExpressionCmc10g0276631
SyntenyCmc10g0276631
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAGATTGGTAGATGAGATGCTGTCCTCAGGCATCATCCGTCCCAACAAGAGCCTCTATTCCAGCCTGGTGTTGTTGGTGAGGAAGAAAGACGGGAGCTGGCGATTTTGTGTAGATTACAGAGCCCTAACTAATGTGACCATACCCGATAAATTCCCTATCCCGATCATCGAGGAGCTGTTTGATGAACTAAATGGAGCTAACATGTTCTCCAAGATTGACCTCAAGGCCGAATACCACCAAATACGGATGTGCCCTGATGATATTGAAAAGACAGTCTTCTGTACTCACGAGGGCCATTACGAATTCCTAGTGATGTCGTTCGGTTTGACTAACGCCCCCTCGACATTCCAGGCTTTGATGAATCAAGTATTCAAGCAGTATTTGAGAAGGTGTCCTTGTTTTCTTCGATGACATTTTGGTGTACAGTAAAGGACTAGACGAACATTTGCAGCACTTGAAAGTTGTCTTAGAACTGTTGAGAGAGAATGAATTGTACGCAAACCTGGAAAAGTGTAGCTTTGCAAAACCACGGATTGGGTACTTGGGCCACTTCATATTTGAAAAAGGCATTGAGGTAGACCCCGAAAAGATCAGGGCTGTCAGGGAATGGCCGGTCTCTACCAACGTGCTGGAAATTCAAGGATTCCTAGGCCTCACGGGGTACTACCAACGATTCGTGAAGAACTATGGCACCATGGCAGCTCCCCTAACTCAATTACAAAGACTAGTGCTTTTCGATGGAGTGAGGAAGCAGAGACAGCGTTTGAAAGGCTTAACATGGCCATGA

mRNA sequence

ATGGAGAGATTGGTAGATGAGATGCTGTCCTCAGGCATCATCCGTCCCAACAAGAGCCTCTATTCCAGCCTGGTGTTGTTGGTGAGGAAGAAAGACGGGAGCTGGCGATTTTGTGTAGATTACAGAGCCCTAACTAATGTGACCATACCCGATAAATTCCCTATCCCGATCATCGAGGAGCTGTTTGATGAACTAAATGGAGCTAACATGTTCTCCAAGATTGACCTCAAGGCCGAATACCACCAAATACGGATGTGCCCTGATGATATTGAAAAGACAGTCTTCTGTACTCACGAGGGCCATTACGAATTCCTAGTGATGTCGTTCGGTTTGACTAACGCCCCCTCGACATTCCAGGCTTTGATGAATCAAGTATTCAAGCATAAAGGACTAGACGAACATTTGCAGCACTTGAAAGTTGTCTTAGAACTGTTGAGAGAGAATGAATTGTACGCAAACCTGGAAAAGTGTAGCTTTGCAAAACCACGGATTGGGTACTTGGGCCACTTCATATTTGAAAAAGGCATTGAGGTAGACCCCGAAAAGATCAGGGCTGTCAGGGAATGGCCGGTCTCTACCAACGTGCTGGAAATTCAAGGATTCCTAGGCCTCACGGGGTACTACCAACGATTCGTGAAGAACTATGGCACCATGGCAGCTCCCCTAACTCAATTACAAAGACTAGTGCTTTTCGATGGAGTGAGGAAGCAGAGACAGCGTTTGAAAGGCTTAACATGGCCATGA

Coding sequence (CDS)

ATGGAGAGATTGGTAGATGAGATGCTGTCCTCAGGCATCATCCGTCCCAACAAGAGCCTCTATTCCAGCCTGGTGTTGTTGGTGAGGAAGAAAGACGGGAGCTGGCGATTTTGTGTAGATTACAGAGCCCTAACTAATGTGACCATACCCGATAAATTCCCTATCCCGATCATCGAGGAGCTGTTTGATGAACTAAATGGAGCTAACATGTTCTCCAAGATTGACCTCAAGGCCGAATACCACCAAATACGGATGTGCCCTGATGATATTGAAAAGACAGTCTTCTGTACTCACGAGGGCCATTACGAATTCCTAGTGATGTCGTTCGGTTTGACTAACGCCCCCTCGACATTCCAGGCTTTGATGAATCAAGTATTCAAGCATAAAGGACTAGACGAACATTTGCAGCACTTGAAAGTTGTCTTAGAACTGTTGAGAGAGAATGAATTGTACGCAAACCTGGAAAAGTGTAGCTTTGCAAAACCACGGATTGGGTACTTGGGCCACTTCATATTTGAAAAAGGCATTGAGGTAGACCCCGAAAAGATCAGGGCTGTCAGGGAATGGCCGGTCTCTACCAACGTGCTGGAAATTCAAGGATTCCTAGGCCTCACGGGGTACTACCAACGATTCGTGAAGAACTATGGCACCATGGCAGCTCCCCTAACTCAATTACAAAGACTAGTGCTTTTCGATGGAGTGAGGAAGCAGAGACAGCGTTTGAAAGGCTTAACATGGCCATGA

Protein sequence

MERLVDEMLSSGIIRPNKSLYSSLVLLVRKKDGSWRFCVDYRALTNVTIPDKFPIPIIEELFDELNGANMFSKIDLKAEYHQIRMCPDDIEKTVFCTHEGHYEFLVMSFGLTNAPSTFQALMNQVFKHKGLDEHLQHLKVVLELLRENELYANLEKCSFAKPRIGYLGHFIFEKGIEVDPEKIRAVREWPVSTNVLEIQGFLGLTGYYQRFVKNYGTMAAPLTQLQRLVLFDGVRKQRQRLKGLTWP
Homology
BLAST of Cmc10g0276631 vs. NCBI nr
Match: KAA0038753.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 384.4 bits (986), Expect = 7.3e-103
Identity = 186/242 (76.86%), Postives = 206/242 (85.12%), Query Frame = 0

Query: 1    MERLVDEMLSSGIIRPNKSLYSSLVLLVRKKDGSWRFCVDYRALTNVTIPDKFPIPIIEE 60
            MERLVDEMLSSGIIRP+KS YSS VLLVRKKDGSWRFCVDYRAL NVTIPDKFPIP+IEE
Sbjct: 1165 MERLVDEMLSSGIIRPSKSPYSSPVLLVRKKDGSWRFCVDYRALNNVTIPDKFPIPVIEE 1224

Query: 61   LFDELNGANMFSKIDLKAEYHQIRMCPDDIEKTVFCTHEGHYEFLVMSFGLTNAPSTFQA 120
            LFDEL GA++FSK+DLKA YHQIRMCP+DIEKT F THEGHYEFLVM FGLTNAPSTFQA
Sbjct: 1225 LFDELKGASVFSKLDLKAGYHQIRMCPEDIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQA 1284

Query: 121  LMNQVFK-----------------HKGLDEHLQHLKVVLELLRENELYANLEKCSFAKPR 180
            LMNQVFK                  +G+DEH+QHL+VVL LL++ EL+ N+EKCSFAKPR
Sbjct: 1285 LMNQVFKPYLRRFVLVFFDDILIYSQGMDEHVQHLEVVLGLLQDRELFVNMEKCSFAKPR 1344

Query: 181  IGYLGHFIFEKGIEVDPEKIRAVREWPVSTNVLEIQGFLGLTGYYQRFVKNYGTMAAPLT 226
            I YLGHFI E+G+E DPEKIRAV EWP  TNV E++GFLGLTGYY+RFVKNYGT+AAPLT
Sbjct: 1345 ISYLGHFISEQGLEADPEKIRAVSEWPTPTNVREVRGFLGLTGYYRRFVKNYGTIAAPLT 1404

BLAST of Cmc10g0276631 vs. NCBI nr
Match: KAA0037196.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 384.4 bits (986), Expect = 7.3e-103
Identity = 187/242 (77.27%), Postives = 205/242 (84.71%), Query Frame = 0

Query: 1   MERLVDEMLSSGIIRPNKSLYSSLVLLVRKKDGSWRFCVDYRALTNVTIPDKFPIPIIEE 60
           MERLVDEML+SGIIRP+KS YSS VLLVRKKDGSWRFCVDYRAL NVTIPDKFPIP+IEE
Sbjct: 737 MERLVDEMLTSGIIRPSKSPYSSPVLLVRKKDGSWRFCVDYRALNNVTIPDKFPIPVIEE 796

Query: 61  LFDELNGANMFSKIDLKAEYHQIRMCPDDIEKTVFCTHEGHYEFLVMSFGLTNAPSTFQA 120
           LFDEL GA++FSKIDLKA YHQIRMCP+DIEKT F THEGHYEFLVM FGLTNAPSTFQA
Sbjct: 797 LFDELKGASVFSKIDLKAGYHQIRMCPEDIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQA 856

Query: 121 LMNQVFK-----------------HKGLDEHLQHLKVVLELLRENELYANLEKCSFAKPR 180
           LMNQVFK                  +G++EH+QHL+VVL LL+E ELY N+EKCSFAKPR
Sbjct: 857 LMNQVFKPYLRRFVLVFFDDILVYSRGMEEHVQHLEVVLGLLQEKELYVNMEKCSFAKPR 916

Query: 181 IGYLGHFIFEKGIEVDPEKIRAVREWPVSTNVLEIQGFLGLTGYYQRFVKNYGTMAAPLT 226
           I YLGHFI E+GIE DPEKIRAV EWP   NV E++GFLGLTGYY+RFVKNYGT+AAPLT
Sbjct: 917 ISYLGHFISEQGIEADPEKIRAVSEWPAPANVREVRGFLGLTGYYRRFVKNYGTIAAPLT 976

BLAST of Cmc10g0276631 vs. NCBI nr
Match: KAA0035107.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 384.4 bits (986), Expect = 7.3e-103
Identity = 186/242 (76.86%), Postives = 206/242 (85.12%), Query Frame = 0

Query: 1    MERLVDEMLSSGIIRPNKSLYSSLVLLVRKKDGSWRFCVDYRALTNVTIPDKFPIPIIEE 60
            MERLVDEMLSSGIIRP+KS YSS VLLVRKKDGSWRFCVDYRAL NVTIPDKFPIP+IEE
Sbjct: 984  MERLVDEMLSSGIIRPSKSPYSSPVLLVRKKDGSWRFCVDYRALNNVTIPDKFPIPVIEE 1043

Query: 61   LFDELNGANMFSKIDLKAEYHQIRMCPDDIEKTVFCTHEGHYEFLVMSFGLTNAPSTFQA 120
            LFDEL GA++FSK+DLKA YHQIRMCP+DIEKT F THEGHYEFLVM FGLTNAPSTFQA
Sbjct: 1044 LFDELKGASVFSKLDLKAGYHQIRMCPEDIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQA 1103

Query: 121  LMNQVFK-----------------HKGLDEHLQHLKVVLELLRENELYANLEKCSFAKPR 180
            LMNQVFK                  +G+DEH+QHL+VVL LL++ EL+ N+EKCSFAKPR
Sbjct: 1104 LMNQVFKPYLRRFVLVFFDDILIYSQGMDEHVQHLEVVLGLLQDRELFVNMEKCSFAKPR 1163

Query: 181  IGYLGHFIFEKGIEVDPEKIRAVREWPVSTNVLEIQGFLGLTGYYQRFVKNYGTMAAPLT 226
            I YLGHFI E+G+E DPEKIRAV EWP  TNV E++GFLGLTGYY+RFVKNYGT+AAPLT
Sbjct: 1164 ISYLGHFISEQGLEADPEKIRAVSEWPTPTNVREVRGFLGLTGYYRRFVKNYGTIAAPLT 1223

BLAST of Cmc10g0276631 vs. NCBI nr
Match: TYK02563.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 384.4 bits (986), Expect = 7.3e-103
Identity = 186/242 (76.86%), Postives = 206/242 (85.12%), Query Frame = 0

Query: 1   MERLVDEMLSSGIIRPNKSLYSSLVLLVRKKDGSWRFCVDYRALTNVTIPDKFPIPIIEE 60
           MERLVDEMLSSGIIRP+KS YSS VLLVRKKDGSWRFCVDYRAL NVTIPDKFPIP+IEE
Sbjct: 639 MERLVDEMLSSGIIRPSKSPYSSPVLLVRKKDGSWRFCVDYRALNNVTIPDKFPIPVIEE 698

Query: 61  LFDELNGANMFSKIDLKAEYHQIRMCPDDIEKTVFCTHEGHYEFLVMSFGLTNAPSTFQA 120
           LFDEL GA++FSK+DLKA YHQIRMCP+DIEKT F THEGHYEFLVM FGLTNAPSTFQA
Sbjct: 699 LFDELKGASVFSKLDLKAGYHQIRMCPEDIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQA 758

Query: 121 LMNQVFK-----------------HKGLDEHLQHLKVVLELLRENELYANLEKCSFAKPR 180
           LMNQVFK                  +G+DEH+QHL+VVL LL++ EL+ N+EKCSFAKPR
Sbjct: 759 LMNQVFKPYLRRFVLVFFDDILIYSQGMDEHVQHLEVVLGLLQDRELFVNMEKCSFAKPR 818

Query: 181 IGYLGHFIFEKGIEVDPEKIRAVREWPVSTNVLEIQGFLGLTGYYQRFVKNYGTMAAPLT 226
           I YLGHFI E+G+E DPEKIRAV EWP  TNV E++GFLGLTGYY+RFVKNYGT+AAPLT
Sbjct: 819 ISYLGHFISEQGLEADPEKIRAVSEWPTPTNVREVRGFLGLTGYYRRFVKNYGTIAAPLT 878

BLAST of Cmc10g0276631 vs. NCBI nr
Match: TYK08591.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 384.4 bits (986), Expect = 7.3e-103
Identity = 186/242 (76.86%), Postives = 206/242 (85.12%), Query Frame = 0

Query: 1    MERLVDEMLSSGIIRPNKSLYSSLVLLVRKKDGSWRFCVDYRALTNVTIPDKFPIPIIEE 60
            MERLVDEMLSSGIIRP+KS YSS VLLVRKKDGSWRFCVDYRAL NVTIPDKFPIP+IEE
Sbjct: 1244 MERLVDEMLSSGIIRPSKSPYSSPVLLVRKKDGSWRFCVDYRALNNVTIPDKFPIPVIEE 1303

Query: 61   LFDELNGANMFSKIDLKAEYHQIRMCPDDIEKTVFCTHEGHYEFLVMSFGLTNAPSTFQA 120
            LFDEL GA++FSK+DLKA YHQIRMCP+DIEKT F THEGHYEFLVM FGLTNAPSTFQA
Sbjct: 1304 LFDELKGASVFSKLDLKAGYHQIRMCPEDIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQA 1363

Query: 121  LMNQVFK-----------------HKGLDEHLQHLKVVLELLRENELYANLEKCSFAKPR 180
            LMNQVFK                  +G+DEH+QHL+VVL LL++ EL+ N+EKCSFAKPR
Sbjct: 1364 LMNQVFKPYLRRFVLVFFDDILIYSQGMDEHVQHLEVVLGLLQDRELFVNMEKCSFAKPR 1423

Query: 181  IGYLGHFIFEKGIEVDPEKIRAVREWPVSTNVLEIQGFLGLTGYYQRFVKNYGTMAAPLT 226
            I YLGHFI E+G+E DPEKIRAV EWP  TNV E++GFLGLTGYY+RFVKNYGT+AAPLT
Sbjct: 1424 ISYLGHFISEQGLEADPEKIRAVSEWPTPTNVREVRGFLGLTGYYRRFVKNYGTIAAPLT 1483

BLAST of Cmc10g0276631 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 2.6e-50
Identity = 101/246 (41.06%), Postives = 146/246 (59.35%), Query Frame = 0

Query: 1   MERLVDEMLSSGIIRPNKSLYSSLVLLVRKKDGS-----WRFCVDYRALTNVTIPDKFPI 60
           +E  + +ML+ GIIR + S Y+S + +V KK  +     +R  +DYR L  +T+ D+ PI
Sbjct: 223 VESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHPI 282

Query: 61  PIIEELFDELNGANMFSKIDLKAEYHQIRMCPDDIEKTVFCTHEGHYEFLVMSFGLTNAP 120
           P ++E+  +L   N F+ IDL   +HQI M P+ + KT F T  GHYE+L M FGL NAP
Sbjct: 283 PNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAP 342

Query: 121 STFQALMNQVF-----KH------------KGLDEHLQHLKVVLELLRENELYANLEKCS 180
           +TFQ  MN +      KH              LDEHLQ L +V E L +  L   L+KC 
Sbjct: 343 ATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCE 402

Query: 181 FAKPRIGYLGHFIFEKGIEVDPEKIRAVREWPVSTNVLEIQGFLGLTGYYQRFVKNYGTM 225
           F K    +LGH +   GI+ +PEKI A++++P+ T   EI+ FLGLTGYY++F+ N+  +
Sbjct: 403 FLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADI 462

BLAST of Cmc10g0276631 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 9.1e-48
Identity = 98/245 (40.00%), Postives = 139/245 (56.73%), Query Frame = 0

Query: 1   MERLVDEMLSSGIIRPNKSLYSSLVLLVRKKD-----GSWRFCVDYRALTNVTIPDKFPI 60
           +E  V EML+ G+IR + S Y+S   +V KK        +R  +DYR L  +TIPD++PI
Sbjct: 222 VENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYPI 281

Query: 61  PIIEELFDELNGANMFSKIDLKAEYHQIRMCPDDIEKTVFCTHEGHYEFLVMSFGLTNAP 120
           P ++E+  +L     F+ IDL   +HQI M  + I KT F T  GHYE+L M FGL NAP
Sbjct: 282 PNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNAP 341

Query: 121 STFQALMNQVF-----KH------------KGLDEHLQHLKVVLELLRENELYANLEKCS 180
           +TFQ  MN +      KH              L EHL  +++V   L +  L   L+KC 
Sbjct: 342 ATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKCE 401

Query: 181 FAKPRIGYLGHFIFEKGIEVDPEKIRAVREWPVSTNVLEIQGFLGLTGYYQRFVKNYGTM 224
           F K    +LGH +   GI+ +P K++A+  +P+ T   EI+ FLGLTGYY++F+ NY  +
Sbjct: 402 FLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYADI 461

BLAST of Cmc10g0276631 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 2.7e-47
Identity = 97/249 (38.96%), Postives = 145/249 (58.23%), Query Frame = 0

Query: 1   MERLVDEMLSSGIIRPNKSLYSSLVLLVRKK-----DGSWRFCVDYRALTNVTIPDKFPI 60
           +ER +DE+L  GIIRP+ S Y+S + +V KK     +  +R  VD++ L  VTIPD +PI
Sbjct: 139 VERQIDELLQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYPI 198

Query: 61  PIIEELFDELNGANMFSKIDLKAEYHQIRMCPDDIEKTVFCTHEGHYEFLVMSFGLTNAP 120
           P I      L  A  F+ +DL + +HQI M   DI KT F T  G YEFL + FGL NAP
Sbjct: 199 PDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAP 258

Query: 121 STFQALMNQVFKH-----------------KGLDEHLQHLKVVLELLRENELYANLEKCS 180
           + FQ +++ + +                  +  D H ++L++VL  L +  L  NLEK  
Sbjct: 259 AIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKSH 318

Query: 181 FAKPRIGYLGHFIFEKGIEVDPEKIRAVREWPVSTNVLEIQGFLGLTGYYQRFVKNYGTM 228
           F   ++ +LG+ +   GI+ DP+K+RA+ E P  T+V E++ FLG+T YY++F+++Y  +
Sbjct: 319 FLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAKV 378

BLAST of Cmc10g0276631 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 178.3 bits (451), Expect = 1.0e-43
Identity = 94/237 (39.66%), Postives = 130/237 (54.85%), Query Frame = 0

Query: 1   MERLVDEMLSSGIIRPNKSLYSSLVLLVRKKDGSWRFCVDYRALTNVTIPDKFPIPIIEE 60
           + ++V ++L +  I P+KS  SS V+LV KKDG++R CVDYR L   TI D FP+P I+ 
Sbjct: 612 INKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDN 671

Query: 61  LFDELNGANMFSKIDLKAEYHQIRMCPDDIEKTVFCTHEGHYEFLVMSFGLTNAPSTFQA 120
           L   +  A +F+ +DL + YHQI M P D  KT F T  G YE+ VM FGL NAPSTF  
Sbjct: 672 LLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFAR 731

Query: 121 LMNQVFK---------------HKGLDEHLQHLKVVLELLRENELYANLEKCSFAKPRIG 180
            M   F+                +  +EH +HL  VLE L+   L    +KC FA     
Sbjct: 732 YMADTFRDLRFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETE 791

Query: 181 YLGHFIFEKGIEVDPEKIRAVREWPVSTNVLEIQGFLGLTGYYQRFVKNYGTMAAPL 223
           +LG+ I  + I     K  A+R++P    V + Q FLG+  YY+RF+ N   +A P+
Sbjct: 792 FLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPI 848

BLAST of Cmc10g0276631 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 178.3 bits (451), Expect = 1.0e-43
Identity = 94/237 (39.66%), Postives = 130/237 (54.85%), Query Frame = 0

Query: 1   MERLVDEMLSSGIIRPNKSLYSSLVLLVRKKDGSWRFCVDYRALTNVTIPDKFPIPIIEE 60
           + ++V ++L +  I P+KS  SS V+LV KKDG++R CVDYR L   TI D FP+P I+ 
Sbjct: 638 INKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDN 697

Query: 61  LFDELNGANMFSKIDLKAEYHQIRMCPDDIEKTVFCTHEGHYEFLVMSFGLTNAPSTFQA 120
           L   +  A +F+ +DL + YHQI M P D  KT F T  G YE+ VM FGL NAPSTF  
Sbjct: 698 LLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFAR 757

Query: 121 LMNQVFK---------------HKGLDEHLQHLKVVLELLRENELYANLEKCSFAKPRIG 180
            M   F+                +  +EH +HL  VLE L+   L    +KC FA     
Sbjct: 758 YMADTFRDLRFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETE 817

Query: 181 YLGHFIFEKGIEVDPEKIRAVREWPVSTNVLEIQGFLGLTGYYQRFVKNYGTMAAPL 223
           +LG+ I  + I     K  A+R++P    V + Q FLG+  YY+RF+ N   +A P+
Sbjct: 818 FLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPI 874

BLAST of Cmc10g0276631 vs. ExPASy TrEMBL
Match: A0A5D3CU05 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G00630 PE=4 SV=1)

HSP 1 Score: 384.4 bits (986), Expect = 3.5e-103
Identity = 187/242 (77.27%), Postives = 205/242 (84.71%), Query Frame = 0

Query: 1   MERLVDEMLSSGIIRPNKSLYSSLVLLVRKKDGSWRFCVDYRALTNVTIPDKFPIPIIEE 60
           MERLVDEML+SGIIRP+KS YSS VLLVRKKDGSWRFCVDYRAL NVTIPDKFPIP+IEE
Sbjct: 737 MERLVDEMLTSGIIRPSKSPYSSPVLLVRKKDGSWRFCVDYRALNNVTIPDKFPIPVIEE 796

Query: 61  LFDELNGANMFSKIDLKAEYHQIRMCPDDIEKTVFCTHEGHYEFLVMSFGLTNAPSTFQA 120
           LFDEL GA++FSKIDLKA YHQIRMCP+DIEKT F THEGHYEFLVM FGLTNAPSTFQA
Sbjct: 797 LFDELKGASVFSKIDLKAGYHQIRMCPEDIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQA 856

Query: 121 LMNQVFK-----------------HKGLDEHLQHLKVVLELLRENELYANLEKCSFAKPR 180
           LMNQVFK                  +G++EH+QHL+VVL LL+E ELY N+EKCSFAKPR
Sbjct: 857 LMNQVFKPYLRRFVLVFFDDILVYSRGMEEHVQHLEVVLGLLQEKELYVNMEKCSFAKPR 916

Query: 181 IGYLGHFIFEKGIEVDPEKIRAVREWPVSTNVLEIQGFLGLTGYYQRFVKNYGTMAAPLT 226
           I YLGHFI E+GIE DPEKIRAV EWP   NV E++GFLGLTGYY+RFVKNYGT+AAPLT
Sbjct: 917 ISYLGHFISEQGIEADPEKIRAVSEWPTPANVREVRGFLGLTGYYRRFVKNYGTIAAPLT 976

BLAST of Cmc10g0276631 vs. ExPASy TrEMBL
Match: A0A5A7SS61 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold400G00430 PE=4 SV=1)

HSP 1 Score: 384.4 bits (986), Expect = 3.5e-103
Identity = 186/242 (76.86%), Postives = 206/242 (85.12%), Query Frame = 0

Query: 1   MERLVDEMLSSGIIRPNKSLYSSLVLLVRKKDGSWRFCVDYRALTNVTIPDKFPIPIIEE 60
           MERLVDEMLSSGIIRP+KS YSS VLLVRKKDGSWRFCVDYRAL NVTIPDKFPIP+IEE
Sbjct: 722 MERLVDEMLSSGIIRPSKSPYSSPVLLVRKKDGSWRFCVDYRALNNVTIPDKFPIPVIEE 781

Query: 61  LFDELNGANMFSKIDLKAEYHQIRMCPDDIEKTVFCTHEGHYEFLVMSFGLTNAPSTFQA 120
           LFDEL GA++FSK+DLKA YHQIRMCP+DIEKT F THEGHYEFLVM FGLTNAPSTFQA
Sbjct: 782 LFDELKGASVFSKLDLKAGYHQIRMCPEDIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQA 841

Query: 121 LMNQVFK-----------------HKGLDEHLQHLKVVLELLRENELYANLEKCSFAKPR 180
           LMNQVFK                  +G+DEH+QHL+VVL LL++ EL+ N+EKCSFAKPR
Sbjct: 842 LMNQVFKPYLRRFVLVFFDDILIYSQGMDEHVQHLEVVLGLLQDRELFVNMEKCSFAKPR 901

Query: 181 IGYLGHFIFEKGIEVDPEKIRAVREWPVSTNVLEIQGFLGLTGYYQRFVKNYGTMAAPLT 226
           I YLGHFI E+G+E DPEKIRAV EWP  TNV E++GFLGLTGYY+RFVKNYGT+AAPLT
Sbjct: 902 ISYLGHFISEQGLEADPEKIRAVSEWPTPTNVREVRGFLGLTGYYRRFVKNYGTIAAPLT 961

BLAST of Cmc10g0276631 vs. ExPASy TrEMBL
Match: A0A5D3DMY9 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00980 PE=4 SV=1)

HSP 1 Score: 384.4 bits (986), Expect = 3.5e-103
Identity = 186/242 (76.86%), Postives = 206/242 (85.12%), Query Frame = 0

Query: 1   MERLVDEMLSSGIIRPNKSLYSSLVLLVRKKDGSWRFCVDYRALTNVTIPDKFPIPIIEE 60
           MERLVDEMLSSGIIRP+KS YSS VLLVRKKDGSWRFCVDYRAL NVTIPDKFPIP+IEE
Sbjct: 722 MERLVDEMLSSGIIRPSKSPYSSPVLLVRKKDGSWRFCVDYRALNNVTIPDKFPIPVIEE 781

Query: 61  LFDELNGANMFSKIDLKAEYHQIRMCPDDIEKTVFCTHEGHYEFLVMSFGLTNAPSTFQA 120
           LFDEL GA++FSK+DLKA YHQIRMCP+DIEKT F THEGHYEFLVM FGLTNAPSTFQA
Sbjct: 782 LFDELKGASVFSKLDLKAGYHQIRMCPEDIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQA 841

Query: 121 LMNQVFK-----------------HKGLDEHLQHLKVVLELLRENELYANLEKCSFAKPR 180
           LMNQVFK                  +G+DEH+QHL+VVL LL++ EL+ N+EKCSFAKPR
Sbjct: 842 LMNQVFKPYLRRFVLVFFDDILIYSQGMDEHVQHLEVVLGLLQDRELFVNMEKCSFAKPR 901

Query: 181 IGYLGHFIFEKGIEVDPEKIRAVREWPVSTNVLEIQGFLGLTGYYQRFVKNYGTMAAPLT 226
           I YLGHFI E+G+E DPEKIRAV EWP  TNV E++GFLGLTGYY+RFVKNYGT+AAPLT
Sbjct: 902 ISYLGHFISEQGLEADPEKIRAVSEWPTPTNVREVRGFLGLTGYYRRFVKNYGTIAAPLT 961

BLAST of Cmc10g0276631 vs. ExPASy TrEMBL
Match: A0A5A7T725 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold92G003050 PE=4 SV=1)

HSP 1 Score: 384.4 bits (986), Expect = 3.5e-103
Identity = 186/242 (76.86%), Postives = 206/242 (85.12%), Query Frame = 0

Query: 1    MERLVDEMLSSGIIRPNKSLYSSLVLLVRKKDGSWRFCVDYRALTNVTIPDKFPIPIIEE 60
            MERLVDEMLSSGIIRP+KS YSS VLLVRKKDGSWRFCVDYRAL NVTIPDKFPIP+IEE
Sbjct: 1165 MERLVDEMLSSGIIRPSKSPYSSPVLLVRKKDGSWRFCVDYRALNNVTIPDKFPIPVIEE 1224

Query: 61   LFDELNGANMFSKIDLKAEYHQIRMCPDDIEKTVFCTHEGHYEFLVMSFGLTNAPSTFQA 120
            LFDEL GA++FSK+DLKA YHQIRMCP+DIEKT F THEGHYEFLVM FGLTNAPSTFQA
Sbjct: 1225 LFDELKGASVFSKLDLKAGYHQIRMCPEDIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQA 1284

Query: 121  LMNQVFK-----------------HKGLDEHLQHLKVVLELLRENELYANLEKCSFAKPR 180
            LMNQVFK                  +G+DEH+QHL+VVL LL++ EL+ N+EKCSFAKPR
Sbjct: 1285 LMNQVFKPYLRRFVLVFFDDILIYSQGMDEHVQHLEVVLGLLQDRELFVNMEKCSFAKPR 1344

Query: 181  IGYLGHFIFEKGIEVDPEKIRAVREWPVSTNVLEIQGFLGLTGYYQRFVKNYGTMAAPLT 226
            I YLGHFI E+G+E DPEKIRAV EWP  TNV E++GFLGLTGYY+RFVKNYGT+AAPLT
Sbjct: 1345 ISYLGHFISEQGLEADPEKIRAVSEWPTPTNVREVRGFLGLTGYYRRFVKNYGTIAAPLT 1404

BLAST of Cmc10g0276631 vs. ExPASy TrEMBL
Match: A0A5D3C9P5 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3734G00120 PE=4 SV=1)

HSP 1 Score: 384.4 bits (986), Expect = 3.5e-103
Identity = 186/242 (76.86%), Postives = 206/242 (85.12%), Query Frame = 0

Query: 1    MERLVDEMLSSGIIRPNKSLYSSLVLLVRKKDGSWRFCVDYRALTNVTIPDKFPIPIIEE 60
            MERLVDEMLSSGIIRP+KS YSS VLLVRKKDGSWRFCVDYRAL NVTIPDKFPIP+IEE
Sbjct: 1244 MERLVDEMLSSGIIRPSKSPYSSPVLLVRKKDGSWRFCVDYRALNNVTIPDKFPIPVIEE 1303

Query: 61   LFDELNGANMFSKIDLKAEYHQIRMCPDDIEKTVFCTHEGHYEFLVMSFGLTNAPSTFQA 120
            LFDEL GA++FSK+DLKA YHQIRMCP+DIEKT F THEGHYEFLVM FGLTNAPSTFQA
Sbjct: 1304 LFDELKGASVFSKLDLKAGYHQIRMCPEDIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQA 1363

Query: 121  LMNQVFK-----------------HKGLDEHLQHLKVVLELLRENELYANLEKCSFAKPR 180
            LMNQVFK                  +G+DEH+QHL+VVL LL++ EL+ N+EKCSFAKPR
Sbjct: 1364 LMNQVFKPYLRRFVLVFFDDILIYSQGMDEHVQHLEVVLGLLQDRELFVNMEKCSFAKPR 1423

Query: 181  IGYLGHFIFEKGIEVDPEKIRAVREWPVSTNVLEIQGFLGLTGYYQRFVKNYGTMAAPLT 226
            I YLGHFI E+G+E DPEKIRAV EWP  TNV E++GFLGLTGYY+RFVKNYGT+AAPLT
Sbjct: 1424 ISYLGHFISEQGLEADPEKIRAVSEWPTPTNVREVRGFLGLTGYYRRFVKNYGTIAAPLT 1483

BLAST of Cmc10g0276631 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 106.3 bits (264), Expect = 3.6e-23
Identity = 46/93 (49.46%), Postives = 66/93 (70.97%), Query Frame = 0

Query: 135 LQHLKVVLELLRENELYANLEKCSFAKPRIGYLG--HFIFEKGIEVDPEKIRAVREWPVS 194
           + HL +VL++  +++ YAN +KC+F +P+I YLG  H I  +G+  DP K+ A+  WP  
Sbjct: 1   MNHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEP 60

Query: 195 TNVLEIQGFLGLTGYYQRFVKNYGTMAAPLTQL 226
            N  E++GFLGLTGYY+RFVKNYG +  PLT+L
Sbjct: 61  KNTTELRGFLGLTGYYRRFVKNYGKIVRPLTEL 93

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0038753.17.3e-10376.86Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0037196.17.3e-10377.27Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0035107.17.3e-10376.86Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
TYK02563.17.3e-10376.86Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
TYK08591.17.3e-10376.86Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
P043232.6e-5041.06Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast... [more]
P208259.1e-4840.00Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste... [more]
Q8I7P92.7e-4738.96Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast... [more]
Q993151.0e-4339.66Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
Q7LHG51.0e-4339.66Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
Match NameE-valueIdentityDescription
A0A5D3CU053.5e-10377.27Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7SS613.5e-10376.86Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3DMY93.5e-10376.86Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7T7253.5e-10376.86Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3C9P53.5e-10376.86Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
Match NameE-valueIdentityDescription
ATMG00860.13.6e-2349.46DNA/RNA polymerases superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 28..127
e-value: 1.2E-10
score: 41.3
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 53..171
e-value: 3.7E-62
score: 211.4
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 180..246
e-value: 5.3E-14
score: 54.0
NoneNo IPR availableGENE3D3.10.10.10HIV Type 1 Reverse Transcriptase, subunit A, domain 1coord: 1..113
e-value: 3.7E-62
score: 211.4
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 8..225
NoneNo IPR availablePANTHERPTHR24559:SF324TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEINcoord: 8..225
NoneNo IPR availableCDDcd01647RT_LTRcoord: 12..171
e-value: 5.10839E-76
score: 226.323
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 2..227

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc10g0276631.1Cmc10g0276631.1mRNA