Cmc10g0276441 (gene) Melon (Charmono) v1.1

Overview
NameCmc10g0276441
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag/pol protein
LocationCMiso1.1chr10: 11464834 .. 11465349 (-)
RNA-Seq ExpressionCmc10g0276441
SyntenyCmc10g0276441
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTATGTATGGTTCTAAGGATTTAATTCTTATAAGATACACGGACTCTGATTTTCAAACTAATAGTGATTCTAGGAAATCTACTTCAGGTTCAGTGTTCACTCTTAACGAAGGAGCTGTAGTTTTGAGAAGTATCAAGCAAGGATGTATTGCTGACTCCACCATGGAGGCAAAGTATGTTGCAGCTTGTGAAGCTACCAAAGATGTTGTTTGGCTTAGGAAATTCTTGACTAATTTGGAATTAGTTCTAAACATGTCAAAGCCAATTACTTTTTACTATGATAACAGTGGGGCTGTGGTTAATTCTAGGAAGCCCAAAAGCCACAAGCGTGGAAAGTATATTGAATACAAGTATCACTTGATTCGAGAGATAGTGCATCGAGGGGACGTGATCGTCAAACAAATAGCTTCGGTGCACAACGTTGCCGATCCATTTACAAAGCACCTCACGGCTAAGGTATTTGAGGGTCACCAAGAGAGTTTTGGTTTATGTGACATGCCACATTTAATCTAG

mRNA sequence

ATGCTTATGTATGGTTCTAAGGATTTAATTCTTATAAGATACACGGACTCTGATTTTCAAACTAATAGTGATTCTAGGAAATCTACTTCAGGTTCAGTGTTCACTCTTAACGAAGGAGCTGTAGTTTTGAGAAGTATCAAGCAAGGATGTATTGCTGACTCCACCATGGAGGCAAAGTATGTTGCAGCTTGTGAAGCTACCAAAGATGTTGTTTGGCTTAGGAAATTCTTGACTAATTTGGAATTAGTTCTAAACATGTCAAAGCCAATTACTTTTTACTATGATAACAGTGGGGCTGTGGTTAATTCTAGGAAGCCCAAAAGCCACAAGCGTGGAAAGTATATTGAATACAAGTATCACTTGATTCGAGAGATAGTGCATCGAGGGGACGTGATCGTCAAACAAATAGCTTCGGTGCACAACGTTGCCGATCCATTTACAAAGCACCTCACGGCTAAGGTATTTGAGGGTCACCAAGAGAGTTTTGGTTTATGTGACATGCCACATTTAATCTAG

Coding sequence (CDS)

ATGCTTATGTATGGTTCTAAGGATTTAATTCTTATAAGATACACGGACTCTGATTTTCAAACTAATAGTGATTCTAGGAAATCTACTTCAGGTTCAGTGTTCACTCTTAACGAAGGAGCTGTAGTTTTGAGAAGTATCAAGCAAGGATGTATTGCTGACTCCACCATGGAGGCAAAGTATGTTGCAGCTTGTGAAGCTACCAAAGATGTTGTTTGGCTTAGGAAATTCTTGACTAATTTGGAATTAGTTCTAAACATGTCAAAGCCAATTACTTTTTACTATGATAACAGTGGGGCTGTGGTTAATTCTAGGAAGCCCAAAAGCCACAAGCGTGGAAAGTATATTGAATACAAGTATCACTTGATTCGAGAGATAGTGCATCGAGGGGACGTGATCGTCAAACAAATAGCTTCGGTGCACAACGTTGCCGATCCATTTACAAAGCACCTCACGGCTAAGGTATTTGAGGGTCACCAAGAGAGTTTTGGTTTATGTGACATGCCACATTTAATCTAG

Protein sequence

MLMYGSKDLILIRYTDSDFQTNSDSRKSTSGSVFTLNEGAVVLRSIKQGCIADSTMEAKYVAACEATKDVVWLRKFLTNLELVLNMSKPITFYYDNSGAVVNSRKPKSHKRGKYIEYKYHLIREIVHRGDVIVKQIASVHNVADPFTKHLTAKVFEGHQESFGLCDMPHLI
Homology
BLAST of Cmc10g0276441 vs. NCBI nr
Match: KAA0032127.1 (retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa] >TYK14369.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 288.9 bits (738), Expect = 2.9e-74
Identity = 141/147 (95.92%), Postives = 145/147 (98.64%), Query Frame = 0

Query: 25  SRKSTSGSVFTLNEGAVVLRSIKQGCIADSTMEAKYVAACEATKDVVWLRKFLTNLELVL 84
           +RKSTSGSVFTLNEGAVVLRSIKQGCIADSTMEA+YVAACEATKDVVWLRKFLTNLE+VL
Sbjct: 218 TRKSTSGSVFTLNEGAVVLRSIKQGCIADSTMEAEYVAACEATKDVVWLRKFLTNLEVVL 277

Query: 85  NMSKPITFYYDNSGAVVNSRKPKSHKRGKYIEYKYHLIREIVHRGDVIVKQIASVHNVAD 144
           NMSKPITFY DNSGAV NSRKPKSHKRGKYIEYKYHLIREIVHRGDVI+KQIASVHNVAD
Sbjct: 278 NMSKPITFYCDNSGAVANSRKPKSHKRGKYIEYKYHLIREIVHRGDVIIKQIASVHNVAD 337

Query: 145 PFTKHLTAKVFEGHQESFGLCDMPHLI 172
           PFTKHLTAKVFEGHQESFGLCDMPHLI
Sbjct: 338 PFTKHLTAKVFEGHQESFGLCDMPHLI 364

BLAST of Cmc10g0276441 vs. NCBI nr
Match: KAA0035454.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 283.9 bits (725), Expect = 9.3e-73
Identity = 142/171 (83.04%), Postives = 153/171 (89.47%), Query Frame = 0

Query: 1   MLMYGSKDLILIRYTDSDFQTNSDSRKSTSGSVFTLNEGAVVLRSIKQGCIADSTMEAKY 60
           ML+YGSKDLILI YTDSDFQ + DSRKSTSGSVFTLN GAVV RSIKQGCIADSTMEA+Y
Sbjct: 33  MLVYGSKDLILIGYTDSDFQADRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEY 92

Query: 61  VAACEATKDVVWLRKFLTNLELVLNMSKPITFYYDNSGAVVNSRKPKSHKRGKYIEYKYH 120
           VAACE+ K+ VWLRKFL +LE+V NMSKPIT Y DNSGAV NS++P+SHKRGK+IE KYH
Sbjct: 93  VAACESAKEDVWLRKFLIDLEVVPNMSKPITLYCDNSGAVANSKEPRSHKRGKHIERKYH 152

Query: 121 LIREIVHRGDVIVKQIASVHNVADPFTKHLTAKVFEGHQESFGLCDMPHLI 172
           LIREIVHRGDVIV QIAS HNVADPFTK LTAKVFEGH ES GLCDMPHLI
Sbjct: 153 LIREIVHRGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLCDMPHLI 203

BLAST of Cmc10g0276441 vs. NCBI nr
Match: KAA0046416.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 277.3 bits (708), Expect = 8.7e-71
Identity = 140/170 (82.35%), Postives = 149/170 (87.65%), Query Frame = 0

Query: 1   MLMYGSKDLILIRYTDSDFQTNSDSRKSTSGSVFTLNEGAVVLRSIKQGCIADSTMEAKY 60
           ML+YGSKDLIL  YTDSDFQT+ DSRKSTSGSVFTLN GAVV RSIKQGCI DSTMEA+Y
Sbjct: 339 MLVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIVDSTMEAEY 398

Query: 61  VAACEATKDVVWLRKFLTNLELVLNMSKPITFYYDNSGAVVNSRKPKSHKRGKYIEYKYH 120
           VAACEA K+ VWLR FL +LE+V NMSKPIT Y DNSGAV NSR+P+SHKRGK+IE KYH
Sbjct: 399 VAACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIERKYH 458

Query: 121 LIREIVHRGDVIVKQIASVHNVADPFTKHLTAKVFEGHQESFGLCDMPHL 171
           LIREIVHRGDVIV QIAS HNVADPFTK LTAKVFEGH ES GL DMPHL
Sbjct: 459 LIREIVHRGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHL 508

BLAST of Cmc10g0276441 vs. NCBI nr
Match: TYJ97618.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 277.3 bits (708), Expect = 8.7e-71
Identity = 140/169 (82.84%), Postives = 149/169 (88.17%), Query Frame = 0

Query: 2    LMYGSKDLILIRYTDSDFQTNSDSRKSTSGSVFTLNEGAVVLRSIKQGCIADSTMEAKYV 61
            L+YGSKDLIL  YTDSDFQT+ DSRKSTSGSVFTLN GAVV RSIKQGCIADSTMEA+YV
Sbjct: 959  LVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 1018

Query: 62   AACEATKDVVWLRKFLTNLELVLNMSKPITFYYDNSGAVVNSRKPKSHKRGKYIEYKYHL 121
            AACEA K+ VWLR FL +LE+V NMSKPIT Y DNSGAV NSR+P+SHKRGK+IE KYHL
Sbjct: 1019 AACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIERKYHL 1078

Query: 122  IREIVHRGDVIVKQIASVHNVADPFTKHLTAKVFEGHQESFGLCDMPHL 171
            IREIVHRGDVIV QIAS HNVADPFTK LTAKVFEGH ES GL DMPHL
Sbjct: 1079 IREIVHRGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHL 1127

BLAST of Cmc10g0276441 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 277.3 bits (708), Expect = 8.7e-71
Identity = 140/169 (82.84%), Postives = 149/169 (88.17%), Query Frame = 0

Query: 2    LMYGSKDLILIRYTDSDFQTNSDSRKSTSGSVFTLNEGAVVLRSIKQGCIADSTMEAKYV 61
            L+YGSKDLIL  YTDSDFQT+ DSRKSTSGSVFTLN GAVV RSIKQGCIADSTMEA+YV
Sbjct: 1173 LVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 1232

Query: 62   AACEATKDVVWLRKFLTNLELVLNMSKPITFYYDNSGAVVNSRKPKSHKRGKYIEYKYHL 121
            AACEA K+ VWLR FL +LE+V NMSKPIT Y DNSGAV NSR+P+SHKRGK+IE KYHL
Sbjct: 1233 AACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIERKYHL 1292

Query: 122  IREIVHRGDVIVKQIASVHNVADPFTKHLTAKVFEGHQESFGLCDMPHL 171
            IREIVHRGDVIV QIAS HNVADPFTK LTAKVFEGH ES GL DMPHL
Sbjct: 1293 IREIVHRGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHL 1341

BLAST of Cmc10g0276441 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.2e-22
Identity = 63/163 (38.65%), Postives = 95/163 (58.28%), Query Frame = 0

Query: 2    LMYGSKDLILIRYTDSDFQTNSDSRKSTSGSVFTLNEGAVVLRSIKQGCIADSTMEAKYV 61
            L +G  D IL  YTD+D   + D+RKS++G +FT + GA+  +S  Q C+A ST EA+Y+
Sbjct: 1166 LCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYI 1225

Query: 62   AACEATKDVVWLRKFLTNLELVLNMSKPITFYYDNSGAVVNSRKPKSHKRGKYIEYKYHL 121
            AA E  K+++WL++FL  L L     K    Y D+  A+  S+    H R K+I+ +YH 
Sbjct: 1226 AATETGKEMIWLKRFLQELGL---HQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHW 1285

Query: 122  IREIVHRGDVIVKQIASVHNVADPFTKHLTAKVFEGHQESFGL 165
            IRE+V    + V +I++  N AD  TK +    FE  +E  G+
Sbjct: 1286 IREMVDDESLKVLKISTNENPADMLTKVVPRNKFELCKELVGM 1325

BLAST of Cmc10g0276441 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 97.1 bits (240), Expect = 2.1e-19
Identity = 54/155 (34.84%), Postives = 88/155 (56.77%), Query Frame = 0

Query: 11   LIRYTDSDFQTNSDSRKSTSGSVFTLNEGAVVLRSIK-QGCIADSTMEAKYVAACEATKD 70
            +I Y DSD+  +   RKST+G +F + +  ++  + K Q  +A S+ EA+Y+A  EA ++
Sbjct: 1248 IIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVRE 1307

Query: 71   VVWLRKFLTNLELVLNMSKPITFYYDNSGAVVNSRKPKSHKRGKYIEYKYHLIREIVHRG 130
             +WL+  LT++   + +  PI  Y DN G +  +  P  HKR K+I+ KYH  RE V   
Sbjct: 1308 ALWLKFLLTSIN--IKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNN 1367

Query: 131  DVIVKQIASVHNVADPFTKHLTAKVFEGHQESFGL 165
             + ++ I + + +AD FTK L A  F   ++  GL
Sbjct: 1368 VICLEYIPTENQLADIFTKPLPAARFVELRDKLGL 1400

BLAST of Cmc10g0276441 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.7e-14
Identity = 49/160 (30.63%), Postives = 77/160 (48.12%), Query Frame = 0

Query: 9    LILIRYTDSDFQTNSDSRKSTSGSVFTLNEGAVVLRSIKQGCIADSTMEAKYVAACEATK 68
            L L  Y+D+D+  ++D   ST+G +  L    +   S KQ  +  S+ EA+Y +    + 
Sbjct: 1290 LSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSS 1349

Query: 69   DVVWLRKFLTNLELVLNMSKPITFYYDNSGAVVNSRKPKSHKRGKYIEYKYHLIREIVHR 128
            ++ W+   LT  EL + +S P   Y DN GA      P  H R K+I   YH IR  V  
Sbjct: 1350 ELQWICSLLT--ELGIQLSHPPVIYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQVQS 1409

Query: 129  GDVIVKQIASVHNVADPFTKHLTAKVFEGHQESFGLCDMP 169
            G + V  +++   +AD  TK L+   F+      G+  +P
Sbjct: 1410 GALRVVHVSTHDQLADTLTKPLSRVAFQNFSRKIGVIKVP 1447

BLAST of Cmc10g0276441 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.1e-07
Identity = 30/63 (47.62%), Postives = 44/63 (69.84%), Query Frame = 0

Query: 11  LIRYTDSDFQTNSDSRKSTSGSVFTLNEGAVVLRSIKQGCIADSTMEAKYVAACEATKDV 70
           L+ Y+D+D+  + +SR+STSG +F LN G V  RS KQ  +A S+ E +Y+A  EAT++ 
Sbjct: 71  LVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEYMALSEATQEA 130

Query: 71  VWL 74
           VWL
Sbjct: 131 VWL 133

BLAST of Cmc10g0276441 vs. ExPASy TrEMBL
Match: A0A5A7SRW0 (Retrovirus-related pol polyprotein from transposon tnt 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold186G00030 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.4e-74
Identity = 141/147 (95.92%), Postives = 145/147 (98.64%), Query Frame = 0

Query: 25  SRKSTSGSVFTLNEGAVVLRSIKQGCIADSTMEAKYVAACEATKDVVWLRKFLTNLELVL 84
           +RKSTSGSVFTLNEGAVVLRSIKQGCIADSTMEA+YVAACEATKDVVWLRKFLTNLE+VL
Sbjct: 218 TRKSTSGSVFTLNEGAVVLRSIKQGCIADSTMEAEYVAACEATKDVVWLRKFLTNLEVVL 277

Query: 85  NMSKPITFYYDNSGAVVNSRKPKSHKRGKYIEYKYHLIREIVHRGDVIVKQIASVHNVAD 144
           NMSKPITFY DNSGAV NSRKPKSHKRGKYIEYKYHLIREIVHRGDVI+KQIASVHNVAD
Sbjct: 278 NMSKPITFYCDNSGAVANSRKPKSHKRGKYIEYKYHLIREIVHRGDVIIKQIASVHNVAD 337

Query: 145 PFTKHLTAKVFEGHQESFGLCDMPHLI 172
           PFTKHLTAKVFEGHQESFGLCDMPHLI
Sbjct: 338 PFTKHLTAKVFEGHQESFGLCDMPHLI 364

BLAST of Cmc10g0276441 vs. ExPASy TrEMBL
Match: A0A5A7SVY7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G00810 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 4.5e-73
Identity = 142/171 (83.04%), Postives = 153/171 (89.47%), Query Frame = 0

Query: 1   MLMYGSKDLILIRYTDSDFQTNSDSRKSTSGSVFTLNEGAVVLRSIKQGCIADSTMEAKY 60
           ML+YGSKDLILI YTDSDFQ + DSRKSTSGSVFTLN GAVV RSIKQGCIADSTMEA+Y
Sbjct: 33  MLVYGSKDLILIGYTDSDFQADRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEY 92

Query: 61  VAACEATKDVVWLRKFLTNLELVLNMSKPITFYYDNSGAVVNSRKPKSHKRGKYIEYKYH 120
           VAACE+ K+ VWLRKFL +LE+V NMSKPIT Y DNSGAV NS++P+SHKRGK+IE KYH
Sbjct: 93  VAACESAKEDVWLRKFLIDLEVVPNMSKPITLYCDNSGAVANSKEPRSHKRGKHIERKYH 152

Query: 121 LIREIVHRGDVIVKQIASVHNVADPFTKHLTAKVFEGHQESFGLCDMPHLI 172
           LIREIVHRGDVIV QIAS HNVADPFTK LTAKVFEGH ES GLCDMPHLI
Sbjct: 153 LIREIVHRGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLCDMPHLI 203

BLAST of Cmc10g0276441 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 4.2e-71
Identity = 140/169 (82.84%), Postives = 149/169 (88.17%), Query Frame = 0

Query: 2    LMYGSKDLILIRYTDSDFQTNSDSRKSTSGSVFTLNEGAVVLRSIKQGCIADSTMEAKYV 61
            L+YGSKDLIL  YTDSDFQT+ DSRKSTSGSVFTLN GAVV RSIKQGCIADSTMEA+YV
Sbjct: 1174 LVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 1233

Query: 62   AACEATKDVVWLRKFLTNLELVLNMSKPITFYYDNSGAVVNSRKPKSHKRGKYIEYKYHL 121
            AACEA K+ VWLR FL +LE+V NMSKPIT Y DNSGAV NSR+P+SHKRGK+IE KYHL
Sbjct: 1234 AACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIERKYHL 1293

Query: 122  IREIVHRGDVIVKQIASVHNVADPFTKHLTAKVFEGHQESFGLCDMPHL 171
            IREIVHRGDVIV QIAS HNVADPFTK LTAKVFEGH ES GL DMPHL
Sbjct: 1294 IREIVHRGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHL 1342

BLAST of Cmc10g0276441 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 4.2e-71
Identity = 140/169 (82.84%), Postives = 149/169 (88.17%), Query Frame = 0

Query: 2    LMYGSKDLILIRYTDSDFQTNSDSRKSTSGSVFTLNEGAVVLRSIKQGCIADSTMEAKYV 61
            L+YGSKDLIL  YTDSDFQT+ DSRKSTSGSVFTLN GAVV RSIKQGCIADSTMEA+YV
Sbjct: 1174 LVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 1233

Query: 62   AACEATKDVVWLRKFLTNLELVLNMSKPITFYYDNSGAVVNSRKPKSHKRGKYIEYKYHL 121
            AACEA K+ VWLR FL +LE+V NMSKPIT Y DNSGAV NSR+P+SHKRGK+IE KYHL
Sbjct: 1234 AACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIERKYHL 1293

Query: 122  IREIVHRGDVIVKQIASVHNVADPFTKHLTAKVFEGHQESFGLCDMPHL 171
            IREIVHRGDVIV QIAS HNVADPFTK LTAKVFEGH ES GL DMPHL
Sbjct: 1294 IREIVHRGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHL 1342

BLAST of Cmc10g0276441 vs. ExPASy TrEMBL
Match: A0A5D3BHG7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold639G00150 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 4.2e-71
Identity = 140/169 (82.84%), Postives = 149/169 (88.17%), Query Frame = 0

Query: 2    LMYGSKDLILIRYTDSDFQTNSDSRKSTSGSVFTLNEGAVVLRSIKQGCIADSTMEAKYV 61
            L+YGSKDLIL  YTDSDFQT+ DSRKSTSGSVFTLN GAVV RSIKQGCIADSTMEA+YV
Sbjct: 959  LVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 1018

Query: 62   AACEATKDVVWLRKFLTNLELVLNMSKPITFYYDNSGAVVNSRKPKSHKRGKYIEYKYHL 121
            AACEA K+ VWLR FL +LE+V NMSKPIT Y DNSGAV NSR+P+SHKRGK+IE KYHL
Sbjct: 1019 AACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIERKYHL 1078

Query: 122  IREIVHRGDVIVKQIASVHNVADPFTKHLTAKVFEGHQESFGLCDMPHL 171
            IREIVHRGDVIV QIAS HNVADPFTK LTAKVFEGH ES GL DMPHL
Sbjct: 1079 IREIVHRGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHL 1127

BLAST of Cmc10g0276441 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 70.1 bits (170), Expect = 2.0e-12
Identity = 43/124 (34.68%), Postives = 71/124 (57.26%), Query Frame = 0

Query: 2   LMYGSK-DLILIRYTDSDFQTNSDSRKSTSGSVFTLNEGAVVLRSIKQGCIADSTMEAKY 61
           L Y S+ ++ L  ++D+ FQ+  D+R+ST+G    L    +  +S KQ  ++ S+ EA+Y
Sbjct: 432 LFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEY 491

Query: 62  VAACEATKDVVWLRKFLTNLELVLNMSKPITFYYDNSGAVVNSRKPKSHKRGKYIEYKYH 121
            A   AT +++WL +F   L+L L  SKP   + DN+ A+  +     H+R K+IE   H
Sbjct: 492 RALSFATDEMMWLAQFFRELQLPL--SKPTLLFCDNTAAIHIATNAVFHERTKHIESDCH 551

Query: 122 LIRE 125
            +RE
Sbjct: 552 SVRE 553

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0032127.12.9e-7495.92retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. m... [more]
KAA0035454.19.3e-7383.04gag/pol protein [Cucumis melo var. makuwa][more]
KAA0046416.18.7e-7182.35gag/pol protein [Cucumis melo var. makuwa][more]
TYJ97618.18.7e-7182.84gag/pol protein [Cucumis melo var. makuwa][more]
KAA0048404.18.7e-7182.84gag/pol protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
P109781.2e-2238.65Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P041462.1e-1934.84Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
Q9ZT942.7e-1430.63Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
P0CV721.1e-0747.62Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P... [more]
Match NameE-valueIdentityDescription
A0A5A7SRW01.4e-7495.92Retrovirus-related pol polyprotein from transposon tnt 1-94 OS=Cucumis melo var.... [more]
A0A5A7SVY74.5e-7383.04Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G0081... [more]
A0A5A7SMH84.2e-7182.84Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025... [more]
A0A5D3CPJ64.2e-7182.84Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004... [more]
A0A5D3BHG74.2e-7182.84Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold639G0015... [more]
Match NameE-valueIdentityDescription
AT4G23160.12.0e-1234.68cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439:SF355CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8coord: 34..166
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 34..166
NoneNo IPR availableCDDcd09272RNase_HI_RT_Ty1coord: 14..153
e-value: 9.41105E-54
score: 165.334

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc10g0276441.1Cmc10g0276441.1mRNA