Cmc10g0275341 (gene) Melon (Charmono) v1.1

Overview
NameCmc10g0275341
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
LocationCMiso1.1chr10: 9229308 .. 9229882 (-)
RNA-Seq ExpressionCmc10g0275341
SyntenyCmc10g0275341
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCATCCGGTTTAACGAATGCGCCAGCGGTTTTCATGGATCTCATGAACAGGATCTTCCATCAGTATTTAGATCAGTTTGTGATCGTGTTCATTGATGATATATTAGTTTACTCGGTTGACAGAGAAGCCATGAGGAACATCTGAGGATTGTTCTACAGACTCTACGTGATAAACAGTTGTACGCTAAGTTCAGCAAATATGAGTTCTGGTTGGAACAAGTAATATTTTTAGGGCATGTAGTTTCAGCAAAAGGAGTTAGTGTCGATCCACAAAAAGTGGAAGCGGTTGTAAATTGGGAAAGACCAACCAGTGCGATAGAAGTACGTAGTTTCCTGGGTTTGATAGGATACTATAGGTGTTTTATTGAGGATTTCTCACGATTGGCATTGCCTTTAACTGCTTTGACAAGGAAGAATGCTAAGTTTGAGTGGTCAGATAAATGCGAGCAAAGTTTTCAGGAATTGAAGAAAAGACTAGTCACAGCACCTATTCTAGCACTTTCTGTAACAGGGAAGGACTATGTAATTTATTGTGACGCTTCAAGGCTAGGATTAGGTTGTGTGCTTATGTAA

mRNA sequence

ATGTCATCCGGTTTAACGAATGCGCCAGCGGTTTTCATGGATCTCATGAACAGGATCTTCCATCAAAGCCATGAGGAACATCTGAGGATTGTTCTACAGACTCTACGTGATAAACAGTTGTACGCTAAGTTCAGCAAATATGAGTTCTGGTTGGAACAAGTAATATTTTTAGGGCATGTAGTTTCAGCAAAAGGAGTTAGTGTCGATCCACAAAAAGTGGAAGCGGTTGTAAATTGGGAAAGACCAACCAGTGCGATAGAAGTACGTAGTTTCCTGGGTTTGATAGGATACTATAGGTGTTTTATTGAGGATTTCTCACGATTGGCATTGCCTTTAACTGCTTTGACAAGGAAGAATGCTAAGTTTGAGTGGTCAGATAAATGCGAGCAAAGTTTTCAGGAATTGAAGAAAAGACTAGTCACAGCACCTATTCTAGCACTTTCTGTAACAGGGAAGGACTATGTAATTTATTGTGACGCTTCAAGGCTAGGATTAGGTTGTGTGCTTATGTAA

Coding sequence (CDS)

ATGTCATCCGGTTTAACGAATGCGCCAGCGGTTTTCATGGATCTCATGAACAGGATCTTCCATCAAAGCCATGAGGAACATCTGAGGATTGTTCTACAGACTCTACGTGATAAACAGTTGTACGCTAAGTTCAGCAAATATGAGTTCTGGTTGGAACAAGTAATATTTTTAGGGCATGTAGTTTCAGCAAAAGGAGTTAGTGTCGATCCACAAAAAGTGGAAGCGGTTGTAAATTGGGAAAGACCAACCAGTGCGATAGAAGTACGTAGTTTCCTGGGTTTGATAGGATACTATAGGTGTTTTATTGAGGATTTCTCACGATTGGCATTGCCTTTAACTGCTTTGACAAGGAAGAATGCTAAGTTTGAGTGGTCAGATAAATGCGAGCAAAGTTTTCAGGAATTGAAGAAAAGACTAGTCACAGCACCTATTCTAGCACTTTCTGTAACAGGGAAGGACTATGTAATTTATTGTGACGCTTCAAGGCTAGGATTAGGTTGTGTGCTTATGTAA

Protein sequence

MSSGLTNAPAVFMDLMNRIFHQSHEEHLRIVLQTLRDKQLYAKFSKYEFWLEQVIFLGHVVSAKGVSVDPQKVEAVVNWERPTSAIEVRSFLGLIGYYRCFIEDFSRLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALSVTGKDYVIYCDASRLGLGCVLM
Homology
BLAST of Cmc10g0275341 vs. NCBI nr
Match: KAA0053222.1 (hypothetical protein E6C27_scaffold102G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 315.1 bits (806), Expect = 3.7e-82
Identity = 163/191 (85.34%), Postives = 164/191 (85.86%), Query Frame = 0

Query: 1   MSSGLTNAPAVFMDLMNRIFHQ---------------------SHEEHLRIVLQTLRDKQ 60
           MS GLTNAPAVFMDLMNRIFHQ                     SHEEHLRIVLQTLRDKQ
Sbjct: 662 MSFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQ 721

Query: 61  LYAKFSKYEFWLEQVIFLGHVVSAKGVSVDPQKVEAVVNWERPTSAIEVRSFLGLIGYYR 120
           LYAKFSK EFWLEQV+FLGHVVSAKGVSVDPQKVEAVVNWERPTSA EVRSFLGL GYYR
Sbjct: 722 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR 781

Query: 121 CFIEDFSRLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALSVTGKDYVIYCD 171
            FIEDFSRLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILAL VTGKDYVIYCD
Sbjct: 782 RFIEDFSRLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCD 841

BLAST of Cmc10g0275341 vs. NCBI nr
Match: TYJ96975.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 312.8 bits (800), Expect = 1.9e-81
Identity = 161/191 (84.29%), Postives = 164/191 (85.86%), Query Frame = 0

Query: 1   MSSGLTNAPAVFMDLMNRIFHQ---------------------SHEEHLRIVLQTLRDKQ 60
           M  GLTNAPAVFMDLMNRIFHQ                     SHEEHLRIVLQTLRDKQ
Sbjct: 532 MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQ 591

Query: 61  LYAKFSKYEFWLEQVIFLGHVVSAKGVSVDPQKVEAVVNWERPTSAIEVRSFLGLIGYYR 120
           LYAKFSK EFWLEQV+FLGHVVSAKGVSVDPQKVEAVVNWERPTSA EVRSFLGL GYYR
Sbjct: 592 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR 651

Query: 121 CFIEDFSRLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALSVTGKDYVIYCD 171
            FIEDFS+LALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALSVTGKDYVIYCD
Sbjct: 652 RFIEDFSQLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALSVTGKDYVIYCD 711

BLAST of Cmc10g0275341 vs. NCBI nr
Match: KAA0036001.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK30406.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 308.9 bits (790), Expect = 2.7e-80
Identity = 159/191 (83.25%), Postives = 161/191 (84.29%), Query Frame = 0

Query: 1   MSSGLTNAPAVFMDLMNRIFHQ---------------------SHEEHLRIVLQTLRDKQ 60
           M  GLTNAPAVFMD MNRIFHQ                     SHEEHLRIVLQTLRDKQ
Sbjct: 83  MPFGLTNAPAVFMDFMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQ 142

Query: 61  LYAKFSKYEFWLEQVIFLGHVVSAKGVSVDPQKVEAVVNWERPTSAIEVRSFLGLIGYYR 120
           LYAKFSK EFWLEQV+FLGHVVSAKGV VDPQKVEAVVNWERPTSA EVRSFLGL GYYR
Sbjct: 143 LYAKFSKCEFWLEQVVFLGHVVSAKGVGVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR 202

Query: 121 CFIEDFSRLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALSVTGKDYVIYCD 171
            FIEDFSRLALPLTA+TRKNAKFEWSDKCEQSFQELKKRLVTAPILAL VTGKDYVIYCD
Sbjct: 203 RFIEDFSRLALPLTAMTRKNAKFEWSDKCEQSFQELKKRLVTAPILALLVTGKDYVIYCD 262

BLAST of Cmc10g0275341 vs. NCBI nr
Match: KAA0050493.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 306.6 bits (784), Expect = 1.3e-79
Identity = 158/191 (82.72%), Postives = 161/191 (84.29%), Query Frame = 0

Query: 1   MSSGLTNAPAVFMDLMNRIFH---------------------QSHEEHLRIVLQTLRDKQ 60
           M  GLTNAPAVFMDLMNRIFH                     +SHEEHLRIVLQTLR+KQ
Sbjct: 333 MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQ 392

Query: 61  LYAKFSKYEFWLEQVIFLGHVVSAKGVSVDPQKVEAVVNWERPTSAIEVRSFLGLIGYYR 120
           LYAKFSK EFWLEQV+FLGHVVSAKGVSVDPQKVEAVVNWERP SA EVRSFLGL GYYR
Sbjct: 393 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYR 452

Query: 121 CFIEDFSRLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALSVTGKDYVIYCD 171
            FIEDFSRLALPLTALTRKN KFEWSDKCEQSFQELKKRLVTAPILAL VTGKDYVIYCD
Sbjct: 453 RFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCD 512

BLAST of Cmc10g0275341 vs. NCBI nr
Match: KAA0050527.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 306.6 bits (784), Expect = 1.3e-79
Identity = 158/191 (82.72%), Postives = 161/191 (84.29%), Query Frame = 0

Query: 1   MSSGLTNAPAVFMDLMNRIFH---------------------QSHEEHLRIVLQTLRDKQ 60
           M  GLTNAPAVFMDLMNRIFH                     +SHEEHLRIVLQTLR+KQ
Sbjct: 440 MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQ 499

Query: 61  LYAKFSKYEFWLEQVIFLGHVVSAKGVSVDPQKVEAVVNWERPTSAIEVRSFLGLIGYYR 120
           LYAKFSK EFWLEQV+FLGHVVSAKGVSVDPQKVEAVVNWERP SA EVRSFLGL GYYR
Sbjct: 500 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYR 559

Query: 121 CFIEDFSRLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALSVTGKDYVIYCD 171
            FIEDFSRLALPLTALTRKN KFEWSDKCEQSFQELKKRLVTAPILAL VTGKDYVIYCD
Sbjct: 560 RFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCD 619

BLAST of Cmc10g0275341 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.2e-24
Identity = 72/192 (37.50%), Postives = 104/192 (54.17%), Query Frame = 0

Query: 1   MSSGLTNAPAVFMDLMNR------------------IFHQSHEEHL---RIVLQTLRDKQ 60
           M  GL NAPA F   MN                   IF  S  EHL   ++V   L D  
Sbjct: 333 MPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADAN 392

Query: 61  LYAKFSKYEFWLEQVIFLGHVVSAKGVSVDPQKVEAVVNWERPTSAIEVRSFLGLIGYYR 120
           L  +  K EF  ++  FLGH+V+  G+  +P KV+A+V++  PT   E+R+FLGL GYYR
Sbjct: 393 LKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYR 452

Query: 121 CFIEDFSRLALPLTALTRKNAKFEWSDKCE--QSFQELKKRLVTAPILALSVTGKDYVIY 170
            FI +++ +A P+T+  +K  K + + K E  ++F++LK  ++  PIL L    K +V+ 
Sbjct: 453 KFIPNYADIAKPMTSCLKKRTKID-TQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLT 512

BLAST of Cmc10g0275341 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 7.0e-23
Identity = 66/191 (34.55%), Postives = 102/191 (53.40%), Query Frame = 0

Query: 1   MSSGLTNAPAVFMDLMNRI------------------FHQSHEEHLR---IVLQTLRDKQ 60
           M  GL NAPA F   MN I                  F  S +EHL+   +V + L    
Sbjct: 334 MPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKAN 393

Query: 61  LYAKFSKYEFWLEQVIFLGHVVSAKGVSVDPQKVEAVVNWERPTSAIEVRSFLGLIGYYR 120
           L  +  K EF  ++  FLGHV++  G+  +P+K+EA+  +  PT   E+++FLGL GYYR
Sbjct: 394 LKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYR 453

Query: 121 CFIEDFSRLALPLTALTRKNAKFEWSD-KCEQSFQELKKRLVTAPILALSVTGKDYVIYC 170
            FI +F+ +A P+T   +KN K + ++ + + +F++LK  +   PIL +    K + +  
Sbjct: 454 KFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTT 513

BLAST of Cmc10g0275341 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.2e-22
Identity = 70/198 (35.35%), Postives = 100/198 (50.51%), Query Frame = 0

Query: 4   GLTNAPAVFMDLMNRIF---------------------HQSHEEHLRIVLQTLRDKQLYA 63
           GL NAPA+F  +++ I                      + +H ++LR+VL +L    L  
Sbjct: 253 GLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQV 312

Query: 64  KFSKYEFWLEQVIFLGHVVSAKGVSVDPQKVEAVVNWERPTSAIEVRSFLGLIGYYRCFI 123
              K  F   QV FLG++V+A G+  DP+KV A+     PTS  E++ FLG+  YYR FI
Sbjct: 313 NLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFI 372

Query: 124 EDFSRLALPLTALTR---KNAKFEWSDKCE--------QSFQELKKRLVTAPILALSVTG 170
           +D++++A PLT LTR    N K   S K          QSF +LK  L ++ ILA     
Sbjct: 373 QDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFPCFT 432

BLAST of Cmc10g0275341 vs. ExPASy Swiss-Prot
Match: P92523 (Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 GN=AtMg00860 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.7e-22
Identity = 52/123 (42.28%), Postives = 77/123 (62.60%), Query Frame = 0

Query: 27  HLRIVLQTLRDKQLYAKFSKYEFWLEQVIFLG--HVVSAKGVSVDPQKVEAVVNWERPTS 86
           HL +VLQ     Q YA   K  F   Q+ +LG  H++S +GVS DP K+EA+V W  P +
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 87  AIEVRSFLGLIGYYRCFIEDFSRLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPI 146
             E+R FLGL GYYR F++++ ++  PLT L +KN+  +W++    +F+ LK  + T P+
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNS-LKWTEMAALAFKALKGAVTTLPV 122

Query: 147 LAL 148
           LAL
Sbjct: 123 LAL 124

BLAST of Cmc10g0275341 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.6e-19
Identity = 57/190 (30.00%), Postives = 98/190 (51.58%), Query Frame = 0

Query: 1   MSSGLTNAPAVFMDLMNRIFHQS---------------------HEEHLRIVLQTLRDKQ 60
           M  G++ APA F   +N I  ++                     H +H++ VLQ L++  
Sbjct: 534 MPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNAN 593

Query: 61  LYAKFSKYEFWLEQVIFLGHVVSAKGVSVDPQKVEAVVNWERPTSAIEVRSFLGLIGYYR 120
           L    +K EF   QV F+G+ +S KG +   + ++ V+ W++P +  E+R FLG + Y R
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLR 653

Query: 121 CFIEDFSRLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALSVTGKDYVIYCD 170
            FI   S+L  PL  L +K+ +++W+    Q+ + +K+ LV+ P+L      K  ++  D
Sbjct: 654 KFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETD 713

BLAST of Cmc10g0275341 vs. ExPASy TrEMBL
Match: A0A5A7UBV9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00060 PE=4 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 1.8e-82
Identity = 163/191 (85.34%), Postives = 164/191 (85.86%), Query Frame = 0

Query: 1   MSSGLTNAPAVFMDLMNRIFHQ---------------------SHEEHLRIVLQTLRDKQ 60
           MS GLTNAPAVFMDLMNRIFHQ                     SHEEHLRIVLQTLRDKQ
Sbjct: 662 MSFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQ 721

Query: 61  LYAKFSKYEFWLEQVIFLGHVVSAKGVSVDPQKVEAVVNWERPTSAIEVRSFLGLIGYYR 120
           LYAKFSK EFWLEQV+FLGHVVSAKGVSVDPQKVEAVVNWERPTSA EVRSFLGL GYYR
Sbjct: 722 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR 781

Query: 121 CFIEDFSRLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALSVTGKDYVIYCD 171
            FIEDFSRLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILAL VTGKDYVIYCD
Sbjct: 782 RFIEDFSRLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCD 841

BLAST of Cmc10g0275341 vs. ExPASy TrEMBL
Match: A0A5D3BEU1 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00190 PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 9.0e-82
Identity = 161/191 (84.29%), Postives = 164/191 (85.86%), Query Frame = 0

Query: 1   MSSGLTNAPAVFMDLMNRIFHQ---------------------SHEEHLRIVLQTLRDKQ 60
           M  GLTNAPAVFMDLMNRIFHQ                     SHEEHLRIVLQTLRDKQ
Sbjct: 532 MPFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQ 591

Query: 61  LYAKFSKYEFWLEQVIFLGHVVSAKGVSVDPQKVEAVVNWERPTSAIEVRSFLGLIGYYR 120
           LYAKFSK EFWLEQV+FLGHVVSAKGVSVDPQKVEAVVNWERPTSA EVRSFLGL GYYR
Sbjct: 592 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR 651

Query: 121 CFIEDFSRLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALSVTGKDYVIYCD 171
            FIEDFS+LALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALSVTGKDYVIYCD
Sbjct: 652 RFIEDFSQLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALSVTGKDYVIYCD 711

BLAST of Cmc10g0275341 vs. ExPASy TrEMBL
Match: A0A5A7T306 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold349G00050 PE=4 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 1.3e-80
Identity = 159/191 (83.25%), Postives = 161/191 (84.29%), Query Frame = 0

Query: 1   MSSGLTNAPAVFMDLMNRIFHQ---------------------SHEEHLRIVLQTLRDKQ 60
           M  GLTNAPAVFMD MNRIFHQ                     SHEEHLRIVLQTLRDKQ
Sbjct: 83  MPFGLTNAPAVFMDFMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQ 142

Query: 61  LYAKFSKYEFWLEQVIFLGHVVSAKGVSVDPQKVEAVVNWERPTSAIEVRSFLGLIGYYR 120
           LYAKFSK EFWLEQV+FLGHVVSAKGV VDPQKVEAVVNWERPTSA EVRSFLGL GYYR
Sbjct: 143 LYAKFSKCEFWLEQVVFLGHVVSAKGVGVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR 202

Query: 121 CFIEDFSRLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALSVTGKDYVIYCD 171
            FIEDFSRLALPLTA+TRKNAKFEWSDKCEQSFQELKKRLVTAPILAL VTGKDYVIYCD
Sbjct: 203 RFIEDFSRLALPLTAMTRKNAKFEWSDKCEQSFQELKKRLVTAPILALLVTGKDYVIYCD 262

BLAST of Cmc10g0275341 vs. ExPASy TrEMBL
Match: A0A5A7U2V7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00630 PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 6.5e-80
Identity = 158/191 (82.72%), Postives = 161/191 (84.29%), Query Frame = 0

Query: 1   MSSGLTNAPAVFMDLMNRIFH---------------------QSHEEHLRIVLQTLRDKQ 60
           M  GLTNAPAVFMDLMNRIFH                     +SHEEHLRIVLQTLR+KQ
Sbjct: 741 MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQ 800

Query: 61  LYAKFSKYEFWLEQVIFLGHVVSAKGVSVDPQKVEAVVNWERPTSAIEVRSFLGLIGYYR 120
           LYAKFSK EFWLEQV+FLGHVVSAKGVSVDPQKVEAVVNWERP SA EVRSFLGL GYYR
Sbjct: 801 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYR 860

Query: 121 CFIEDFSRLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALSVTGKDYVIYCD 171
            FIEDFSRLALPLTALTRKN KFEWSDKCEQSFQELKKRLVTAPILAL VTGKDYVIYCD
Sbjct: 861 RFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCD 920

BLAST of Cmc10g0275341 vs. ExPASy TrEMBL
Match: A0A5D3BS67 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold509G00050 PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 6.5e-80
Identity = 158/191 (82.72%), Postives = 161/191 (84.29%), Query Frame = 0

Query: 1   MSSGLTNAPAVFMDLMNRIFH---------------------QSHEEHLRIVLQTLRDKQ 60
           M  GLTNAPAVFMDLMNRIFH                     +SHEEHLRIVLQTLR+KQ
Sbjct: 779 MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQ 838

Query: 61  LYAKFSKYEFWLEQVIFLGHVVSAKGVSVDPQKVEAVVNWERPTSAIEVRSFLGLIGYYR 120
           LYAKFSK EFWLEQV+FLGHVVSAKGVSVDPQKVEAVVNWERP SA EVRSFLGL GYYR
Sbjct: 839 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYR 898

Query: 121 CFIEDFSRLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALSVTGKDYVIYCD 171
            FIEDFSRLALPLTALTRKN KFEWSDKCEQSFQELKKRLVTAPILAL VTGKDYVIYCD
Sbjct: 899 RFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCD 958

BLAST of Cmc10g0275341 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 106.7 bits (265), Expect = 1.9e-23
Identity = 52/123 (42.28%), Postives = 77/123 (62.60%), Query Frame = 0

Query: 27  HLRIVLQTLRDKQLYAKFSKYEFWLEQVIFLG--HVVSAKGVSVDPQKVEAVVNWERPTS 86
           HL +VLQ     Q YA   K  F   Q+ +LG  H++S +GVS DP K+EA+V W  P +
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 87  AIEVRSFLGLIGYYRCFIEDFSRLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPI 146
             E+R FLGL GYYR F++++ ++  PLT L +KN+  +W++    +F+ LK  + T P+
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNS-LKWTEMAALAFKALKGAVTTLPV 122

Query: 147 LAL 148
           LAL
Sbjct: 123 LAL 124

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0053222.13.7e-8285.34hypothetical protein E6C27_scaffold102G00060 [Cucumis melo var. makuwa][more]
TYJ96975.11.9e-8184.29DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
KAA0036001.12.7e-8083.25DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK30406.1 D... [more]
KAA0050493.11.3e-7982.72DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
KAA0050527.11.3e-7982.72DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
P208252.2e-2437.50Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste... [more]
P043237.0e-2334.55Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast... [more]
Q8I7P91.2e-2235.35Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast... [more]
P925232.7e-2242.28Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 ... [more]
P0CT411.6e-1930.00Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24... [more]
Match NameE-valueIdentityDescription
A0A5A7UBV91.8e-8285.34Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BEU19.0e-8284.29DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7T3061.3e-8083.25DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7U2V76.5e-8082.72Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37... [more]
A0A5D3BS676.5e-8082.72Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold50... [more]
Match NameE-valueIdentityDescription
ATMG00860.11.9e-2342.28DNA/RNA polymerases superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR041577Reverse transcriptase/retrotransposon-derived protein, RNase H-like domainPFAMPF17919RT_RNaseH_2coord: 124..170
e-value: 1.0E-11
score: 44.7
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 1..67
e-value: 1.9E-13
score: 52.4
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 71..155
e-value: 2.1E-30
score: 106.6
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 57..170
NoneNo IPR availablePANTHERPTHR24559:SF383DNA/RNA POLYMERASES SUPERFAMILY PROTEINcoord: 57..170
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 1..170

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc10g0275341.1Cmc10g0275341.1mRNA