Cmc10g0275041 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc10g0275041
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Transposon TyH3 Gag-Pol polyprotein
Location	CMiso1.1chr10: 8799790 .. 8800356 (-)
RNA-Seq Expression	Cmc10g0275041
Synteny	Cmc10g0275041

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGCCAGTATGGGAAAGCACATTAACTACCATTCAAGGAGTCCAAATTCAAAGCAACCATTGGAGTTAATGCATTCAAATGTATTTGGTCCTGTCAAGCAATCTTCAATCAGTGGAATGCGCTACATGGTGACCTTTATTGATGACTTCTCCAGGTATGTTTGGGTGTTCTTTATAAAAGAAAAGTCCAAAACAATTACAGAATTCAAAGAATTCAAAGAACAAGTTGAAAATGAGTTAGGAAAGAGAATTCAATGTTTACGTTCAGATAATGGGAGAGAATATATCTCTAATGAATTCTCTCAATACTTGTATAAGTATAAGATATATCATCATTTAACGTGTCCAAACACTCCACAACAAAATGGAGTGGCAGAAAGAAAAAATAATCTTGCAGAAGTATGTCGTAGCATGCTACATGCAAGTAATGTTCCAGGAAGATTTTGGGCTGAGTGTATGAGAACAGTGGCCCTTGTGGTTAACAGACTTCCTCAACAAAGGCTTGAATTCAAATCACCTTATGAAAAGTTGTTGAATATCAAGCCAACAGTTGGACACTTCTGA

mRNA sequence

ATGGTTGCCAGTATGGGAAAGCACATTAACTACCATTCAAGGAGTCCAAATTCAAAGCAACCATTGGAGTTAATGCATTCAAATGTATTTGGTCCTGTCAAGCAATCTTCAATCAGTGGAATGCGCTACATGGTGACCTTTATTGATGACTTCTCCAGGTATGTTTGGGTGTTCTTTATAAAAGAAAAGTCCAAAACAATTACAGAATTCAAAGAATTCAAAGAACAAGTTGAAAATGAGTTAGGAAAGAGAATTCAATGTTTACGTTCAGATAATGGGAGAGAATATATCTCTAATGAATTCTCTCAATACTTGTATAAGTATAAGATATATCATCATTTAACGTGTCCAAACACTCCACAACAAAATGGAGTGGCAGAAAGAAAAAATAATCTTGCAGAAGTATGTCGTAGCATGCTACATGCAAGTAATGTTCCAGGAAGATTTTGGGCTGAGTGTATGAGAACAGTGGCCCTTGTGGTTAACAGACTTCCTCAACAAAGGCTTGAATTCAAATCACCTTATGAAAAGTTGTTGAATATCAAGCCAACAGTTGGACACTTCTGA

Coding sequence (CDS)

ATGGTTGCCAGTATGGGAAAGCACATTAACTACCATTCAAGGAGTCCAAATTCAAAGCAACCATTGGAGTTAATGCATTCAAATGTATTTGGTCCTGTCAAGCAATCTTCAATCAGTGGAATGCGCTACATGGTGACCTTTATTGATGACTTCTCCAGGTATGTTTGGGTGTTCTTTATAAAAGAAAAGTCCAAAACAATTACAGAATTCAAAGAATTCAAAGAACAAGTTGAAAATGAGTTAGGAAAGAGAATTCAATGTTTACGTTCAGATAATGGGAGAGAATATATCTCTAATGAATTCTCTCAATACTTGTATAAGTATAAGATATATCATCATTTAACGTGTCCAAACACTCCACAACAAAATGGAGTGGCAGAAAGAAAAAATAATCTTGCAGAAGTATGTCGTAGCATGCTACATGCAAGTAATGTTCCAGGAAGATTTTGGGCTGAGTGTATGAGAACAGTGGCCCTTGTGGTTAACAGACTTCCTCAACAAAGGCTTGAATTCAAATCACCTTATGAAAAGTTGTTGAATATCAAGCCAACAGTTGGACACTTCTGA

Protein sequence

MVASMGKHINYHSRSPNSKQPLELMHSNVFGPVKQSSISGMRYMVTFIDDFSRYVWVFFIKEKSKTITEFKEFKEQVENELGKRIQCLRSDNGREYISNEFSQYLYKYKIYHHLTCPNTPQQNGVAERKNNLAEVCRSMLHASNVPGRFWAECMRTVALVVNRLPQQRLEFKSPYEKLLNIKPTVGHF

Homology

[Close]

BLAST of Cmc10g0275041 vs. NCBI nr
Match: KAE8673149.1 (hypothetical protein F3Y22_tig00111810pilonHSYRG00151 [Hibiscus syriacus])

HSP 1 Score: 261.9 bits (668), Expect = 4.2e-66
Identity = 128/179 (71.51%), Postives = 147/179 (82.12%), Query Frame = 0


Query: 11  YHSRSPNSKQPLELMHSNVFGPVKQSSISGMRYMVTFIDDFSRYVWVFFIKEKSKTITEF 70
           Y      +K+PLEL+HS+VFGPVKQ SISGMRYMVTFIDDFSRYVWVFF+KEKS T ++F
Sbjct: 475 YDESKFKAKEPLELVHSDVFGPVKQQSISGMRYMVTFIDDFSRYVWVFFMKEKSDTFSKF 534

Query: 71  KEFKEQVENELGKRIQCLRSDNGREYISNEFSQYLYKYKIYHHLTCPNTPQQNGVAERKN 130
           KEF++  E E+GK+I CLR+DNG EY SNEFSQYL + +I H  TC NTPQQNGVAERKN
Sbjct: 535 KEFRDSAEGEVGKKICCLRTDNGGEYRSNEFSQYLRECRIRHQYTCANTPQQNGVAERKN 594

Query: 131 -NLAEVCRSMLHASNVPGRFWAECMRTVALVVNRLPQQRLEFKSPYEKLLNIKPTVGHF 189
            +LAE+CRSMLHA NV GRFWAE MRT A V+NRLPQ RL F SP+EKL NIKPTV +F
Sbjct: 595 RHLAEICRSMLHAKNVSGRFWAEAMRTAAFVINRLPQPRLGFVSPFEKLWNIKPTVSYF 653

[Close]

BLAST of Cmc10g0275041 vs. NCBI nr
Match: KAE8705435.1 (hypothetical protein F3Y22_tig00110429pilonHSYRG01243 [Hibiscus syriacus])

HSP 1 Score: 261.9 bits (668), Expect = 4.2e-66
Identity = 128/179 (71.51%), Postives = 147/179 (82.12%), Query Frame = 0


Query: 11  YHSRSPNSKQPLELMHSNVFGPVKQSSISGMRYMVTFIDDFSRYVWVFFIKEKSKTITEF 70
           Y      +K+PLEL+HS+VFGPVKQ SISGMRYMVTFIDDFSRYVWVFF+KEKS T ++F
Sbjct: 509 YDESKFKAKEPLELVHSDVFGPVKQQSISGMRYMVTFIDDFSRYVWVFFMKEKSDTFSKF 568

Query: 71  KEFKEQVENELGKRIQCLRSDNGREYISNEFSQYLYKYKIYHHLTCPNTPQQNGVAERKN 130
           KEF++  E E+GK+I CLR+DNG EY SNEFSQYL + +I H  TC NTPQQNGVAERKN
Sbjct: 569 KEFRDSAEGEVGKKICCLRTDNGGEYRSNEFSQYLRECRIRHQYTCANTPQQNGVAERKN 628

Query: 131 -NLAEVCRSMLHASNVPGRFWAECMRTVALVVNRLPQQRLEFKSPYEKLLNIKPTVGHF 189
            +LAE+CRSMLHA NV GRFWAE MRT A V+NRLPQ RL F SP+EKL NIKPTV +F
Sbjct: 629 RHLAEICRSMLHAKNVSGRFWAEAMRTAAFVINRLPQPRLGFVSPFEKLWNIKPTVSYF 687

[Close]

BLAST of Cmc10g0275041 vs. NCBI nr
Match: KAE8726439.1 (hypothetical protein F3Y22_tig00006888pilonHSYRG00009 [Hibiscus syriacus])

HSP 1 Score: 261.9 bits (668), Expect = 4.2e-66
Identity = 128/179 (71.51%), Postives = 147/179 (82.12%), Query Frame = 0


Query: 11  YHSRSPNSKQPLELMHSNVFGPVKQSSISGMRYMVTFIDDFSRYVWVFFIKEKSKTITEF 70
           Y      +K+PLEL+HS+VFGPVKQ SISGMRYMVTFIDDFSRYVWVFF+KEKS T ++F
Sbjct: 761 YDESKFKAKEPLELVHSDVFGPVKQQSISGMRYMVTFIDDFSRYVWVFFMKEKSDTFSKF 820

Query: 71  KEFKEQVENELGKRIQCLRSDNGREYISNEFSQYLYKYKIYHHLTCPNTPQQNGVAERKN 130
           KEF++  E E+GK+I CLR+DNG EY SNEFSQYL + +I H  TC NTPQQNGVAERKN
Sbjct: 821 KEFRDSAEGEVGKKICCLRTDNGGEYRSNEFSQYLRECRIRHQYTCANTPQQNGVAERKN 880

Query: 131 -NLAEVCRSMLHASNVPGRFWAECMRTVALVVNRLPQQRLEFKSPYEKLLNIKPTVGHF 189
            +LAE+CRSMLHA NV GRFWAE MRT A V+NRLPQ RL F SP+EKL NIKPTV +F
Sbjct: 881 RHLAEICRSMLHAKNVSGRFWAEAMRTAAFVINRLPQPRLGFVSPFEKLWNIKPTVSYF 939

[Close]

BLAST of Cmc10g0275041 vs. NCBI nr
Match: KAE8687058.1 (hypothetical protein F3Y22_tig00111024pilonHSYRG00006 [Hibiscus syriacus])

HSP 1 Score: 261.9 bits (668), Expect = 4.2e-66
Identity = 128/179 (71.51%), Postives = 147/179 (82.12%), Query Frame = 0


Query: 11  YHSRSPNSKQPLELMHSNVFGPVKQSSISGMRYMVTFIDDFSRYVWVFFIKEKSKTITEF 70
           Y      +K+PLEL+HS+VFGPVKQ SISGMRYMVTFIDDFSRYVWVFF+KEKS T ++F
Sbjct: 408 YDESKFKAKEPLELVHSDVFGPVKQQSISGMRYMVTFIDDFSRYVWVFFMKEKSDTFSKF 467

Query: 71  KEFKEQVENELGKRIQCLRSDNGREYISNEFSQYLYKYKIYHHLTCPNTPQQNGVAERKN 130
           KEF++  E E+GK+I CLR+DNG EY SNEFSQYL + +I H  TC NTPQQNGVAERKN
Sbjct: 468 KEFRDSAEGEVGKKICCLRTDNGGEYRSNEFSQYLRECRIRHQYTCANTPQQNGVAERKN 527

Query: 131 -NLAEVCRSMLHASNVPGRFWAECMRTVALVVNRLPQQRLEFKSPYEKLLNIKPTVGHF 189
            +LAE+CRSMLHA NV GRFWAE MRT A V+NRLPQ RL F SP+EKL NIKPTV +F
Sbjct: 528 RHLAEICRSMLHAKNVSGRFWAEAMRTAAFVINRLPQPRLGFVSPFEKLWNIKPTVSYF 586

[Close]

BLAST of Cmc10g0275041 vs. NCBI nr
Match: KAE8715296.1 (hypothetical protein F3Y22_tig00110183pilonHSYRG00102 [Hibiscus syriacus])

HSP 1 Score: 261.9 bits (668), Expect = 4.2e-66
Identity = 128/179 (71.51%), Postives = 147/179 (82.12%), Query Frame = 0


Query: 11  YHSRSPNSKQPLELMHSNVFGPVKQSSISGMRYMVTFIDDFSRYVWVFFIKEKSKTITEF 70
           Y      +K+PLEL+HS+VFGPVKQ SISGMRYMVTFIDDFSRYVWVFF+KEKS T ++F
Sbjct: 509 YDESKFKAKEPLELVHSDVFGPVKQQSISGMRYMVTFIDDFSRYVWVFFMKEKSDTFSKF 568

Query: 71  KEFKEQVENELGKRIQCLRSDNGREYISNEFSQYLYKYKIYHHLTCPNTPQQNGVAERKN 130
           KEF++  E E+GK+I CLR+DNG EY SNEFSQYL + +I H  TC NTPQQNGVAERKN
Sbjct: 569 KEFRDSAEGEVGKKICCLRTDNGGEYRSNEFSQYLRECRIRHQYTCANTPQQNGVAERKN 628

Query: 131 -NLAEVCRSMLHASNVPGRFWAECMRTVALVVNRLPQQRLEFKSPYEKLLNIKPTVGHF 189
            +LAE+CRSMLHA NV GRFWAE MRT A V+NRLPQ RL F SP+EKL NIKPTV +F
Sbjct: 629 RHLAEICRSMLHAKNVSGRFWAEAMRTAAFVINRLPQPRLGFVSPFEKLWNIKPTVSYF 687

[Close]

BLAST of Cmc10g0275041 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.1e-32
Identity = 72/180 (40.00%), Postives = 106/180 (58.89%), Query Frame = 0


Query: 9   INYHSRSPNSKQPLELMHSNVFGPVKQSSISGMRYMVTFIDDFSRYVWVFFIKEKSKTIT 68
           +++ + S      L+L++S+V GP++  S+ G +Y VTFIDD SR +WV+ +K K +   
Sbjct: 468 VSFQTSSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQ 527

Query: 69  EFKEFKEQVENELGKRIQCLRSDNGREYISNEFSQYLYKYKIYHHLTCPNTPQQNGVAER 128
            F++F   VE E G++++ LRSDNG EY S EF +Y   + I H  T P TPQ NGVAER
Sbjct: 528 VFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAER 587

Query: 129 KN-NLAEVCRSMLHASNVPGRFWAECMRTVALVVNRLPQQRLEFKSPYEKLLNIKPTVGH 188
            N  + E  RSML  + +P  FW E ++T   ++NR P   L F+ P     N + +  H
Sbjct: 588 MNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSH 647

[Close]

BLAST of Cmc10g0275041 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 124.4 bits (311), Expect = 1.4e-27
Identity = 65/172 (37.79%), Postives = 98/172 (56.98%), Query Frame = 0


Query: 19  KQPLELMHSNVFGPVKQSSISGMRYMVTFIDDFSRYVWVFFIKEKSKTITEFKEFKEQVE 78
           K+PL ++HS+V GP+   ++    Y V F+D F+ Y   + IK KS   + F++F  + E
Sbjct: 478 KRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSE 537

Query: 79  NELGKRIQCLRSDNGREYISNEFSQYLYKYKIYHHLTCPNTPQQNGVAERK-NNLAEVCR 138
                ++  L  DNGREY+SNE  Q+  K  I +HLT P+TPQ NGV+ER    + E  R
Sbjct: 538 AHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKAR 597

Query: 139 SMLHASNVPGRFWAECMRTVALVVNRLPQQRL--EFKSPYEKLLNIKPTVGH 188
           +M+  + +   FW E + T   ++NR+P + L    K+PYE   N KP + H
Sbjct: 598 TMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMWHNKKPYLKH 649

[Close]

BLAST of Cmc10g0275041 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 4.5e-23
Identity = 62/177 (35.03%), Postives = 103/177 (58.19%), Query Frame = 0


Query: 9   INYHSRSPNSKQPLELMHSNVF-GPVKQSSISGMRYMVTFIDDFSRYVWVFFIKEKSKTI 68
           + + + +  S +PLE ++S+V+  P+   SI   RY V F+D F+RY W++ +K+KS+  
Sbjct: 490 VPFSNSTITSSKPLEYIYSDVWSSPI--LSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVK 549

Query: 69  TEFKEFKEQVENELGKRIQCLRSDNGREYISNEFSQYLYKYKIYHHLTCPNTPQQNGVAE 128
             F  FK  VEN    RI  L SDNG E++      YL ++ I H  + P+TP+ NG++E
Sbjct: 550 DTFIIFKSLVENRFQTRIGTLYSDNGGEFV--VLRDYLSQHGISHFTSPPHTPEHNGLSE 609

Query: 129 RKN-NLAEVCRSMLHASNVPGRFWAECMRTVALVVNRLPQQRLEFKSPYEKLLNIKP 184
           RK+ ++ E+  ++L  ++VP  +W         ++NRLP   L+ +SP++KL    P
Sbjct: 610 RKHRHIVEMGLTLLSHASVPKTYWPYAFSVAVYLINRLPTPLLQLQSPFQKLFGQPP 662

[Close]

BLAST of Cmc10g0275041 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 5.0e-22
Identity = 58/169 (34.32%), Postives = 98/169 (57.99%), Query Frame = 0


Query: 17  NSKQPLELMHSNVF-GPVKQSSISGMRYMVTFIDDFSRYVWVFFIKEKSKTITEFKEFKE 76
           NS +PLE ++S+V+  P+   S    RY V F+D F+RY W++ +K+KS+    F  FK 
Sbjct: 519 NSTRPLEYIYSDVWSSPI--LSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKN 578

Query: 77  QVENELGKRIQCLRSDNGREYISNEFSQYLYKYKIYHHLTCPNTPQQNGVAERKN-NLAE 136
            +EN    RI    SDNG E+++    +Y  ++ I H  + P+TP+ NG++ERK+ ++ E
Sbjct: 579 LLENRFQTRIGTFYSDNGGEFVA--LWEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVE 638

Query: 137 VCRSMLHASNVPGRFWAECMRTVALVVNRLPQQRLEFKSPYEKLLNIKP 184
              ++L  +++P  +W         ++NRLP   L+ +SP++KL    P
Sbjct: 639 TGLTLLSHASIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKLFGTSP 683

[Close]

BLAST of Cmc10g0275041 vs. ExPASy Swiss-Prot
Match: Q12337 (Transposon Ty2-GR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-GR1 PE=5 SV=2)

HSP 1 Score: 72.8 bits (177), Expect = 4.7e-12
Identity = 41/156 (26.28%), Postives = 76/156 (48.72%), Query Frame = 0


Query: 18  SKQPLELMHSNVFGPVKQSSISGMRYMVTFIDDFSRYVWVFFI--KEKSKTITEFKEFKE 77
           S +P + +H+++FGPV     S   Y ++F D+ +R+ WV+ +  + +   +  F     
Sbjct: 657 SYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSILA 716

Query: 78  QVENELGKRIQCLRSDNGREYISNEFSQYLYKYKIYHHLTCPNTPQQNGVAERKN-NLAE 137
            ++N+   R+  ++ D G EY +    ++     I    T     + +GVAER N  L  
Sbjct: 717 FIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLNRTLLN 776

Query: 138 VCRSMLHASNVPGRFWAECMRTVALVVNRL--PQQR 169
            CR++LH S +P   W   +    ++ N L  P++R
Sbjct: 777 DCRTLLHCSGLPNHLWFSAVEFSTIIRNSLVSPKKR 812

[Close]

BLAST of Cmc10g0275041 vs. ExPASy TrEMBL
Match: A0A2N9HY88 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS46758 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 8.2e-68
Identity = 129/179 (72.07%), Postives = 148/179 (82.68%), Query Frame = 0


Query: 11  YHSRSPNSKQPLELMHSNVFGPVKQSSISGMRYMVTFIDDFSRYVWVFFIKEKSKTITEF 70
           Y      +K+PLEL+HSNVFGPVKQ SI GMRYMVTFIDDFSRYVWVFF+KEKS T ++F
Sbjct: 509 YKESKFKAKEPLELVHSNVFGPVKQPSIGGMRYMVTFIDDFSRYVWVFFMKEKSDTFSKF 568

Query: 71  KEFKEQVENELGKRIQCLRSDNGREYISNEFSQYLYKYKIYHHLTCPNTPQQNGVAERKN 130
           KEF+E  E E+GK+I CLR+DNG EY S+EFSQYL + +I H  TC NTPQQNG+AERKN
Sbjct: 569 KEFRESAEGEVGKKIGCLRTDNGGEYSSSEFSQYLRECRIRHQYTCANTPQQNGIAERKN 628

Query: 131 -NLAEVCRSMLHASNVPGRFWAECMRTVALVVNRLPQQRLEFKSPYEKLLNIKPTVGHF 189
            +LAEVCRSMLHA NVPGRFWAE MRT A V+NRLPQ RLEF SP+EKL N+KPTV +F
Sbjct: 629 RHLAEVCRSMLHAKNVPGRFWAEAMRTAAFVINRLPQPRLEFVSPFEKLWNMKPTVSYF 687

[Close]

BLAST of Cmc10g0275041 vs. ExPASy TrEMBL
Match: A0A2N9HXV3 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS44817 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 1.1e-67
Identity = 129/179 (72.07%), Postives = 149/179 (83.24%), Query Frame = 0


Query: 11  YHSRSPNSKQPLELMHSNVFGPVKQSSISGMRYMVTFIDDFSRYVWVFFIKEKSKTITEF 70
           Y      +K+PLEL+HS+VFGPVKQ SI GMRYMVTFIDDFSRYVWVFF+KEKS T ++F
Sbjct: 528 YKESKFKAKEPLELVHSDVFGPVKQPSIGGMRYMVTFIDDFSRYVWVFFMKEKSDTFSKF 587

Query: 71  KEFKEQVENELGKRIQCLRSDNGREYISNEFSQYLYKYKIYHHLTCPNTPQQNGVAERKN 130
           KEF+E VE E+GK+I CLR+DNG EY S+EFSQYL + +I H  TC NTPQQNG+AERKN
Sbjct: 588 KEFRESVEGEVGKKIGCLRTDNGGEYSSSEFSQYLRECRIRHQYTCANTPQQNGIAERKN 647

Query: 131 -NLAEVCRSMLHASNVPGRFWAECMRTVALVVNRLPQQRLEFKSPYEKLLNIKPTVGHF 189
            +LAEVCRSMLHA NVPGRFWAE MRT A V+NRLPQ RLEF SP+EKL N+KPTV +F
Sbjct: 648 RHLAEVCRSMLHAKNVPGRFWAEAMRTAAFVINRLPQPRLEFVSPFEKLWNMKPTVSYF 706

[Close]

BLAST of Cmc10g0275041 vs. ExPASy TrEMBL
Match: A0A2N9IT58 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS55447 PE=3 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 2.4e-67
Identity = 128/179 (71.51%), Postives = 148/179 (82.68%), Query Frame = 0


Query: 11  YHSRSPNSKQPLELMHSNVFGPVKQSSISGMRYMVTFIDDFSRYVWVFFIKEKSKTITEF 70
           Y      +K+PLEL+HS+VFGPVKQ SI GMRYMVTFIDDFSRYVWVFF+KEKS T ++F
Sbjct: 507 YEESKFKAKEPLELVHSDVFGPVKQPSIGGMRYMVTFIDDFSRYVWVFFMKEKSDTFSKF 566

Query: 71  KEFKEQVENELGKRIQCLRSDNGREYISNEFSQYLYKYKIYHHLTCPNTPQQNGVAERKN 130
           KEF+E  E E+GK+I CLR+DNG EY S+EFSQYL + +I H  TC NTPQQNG+AERKN
Sbjct: 567 KEFRESAEGEVGKKIGCLRTDNGGEYSSSEFSQYLRECRIRHQYTCANTPQQNGIAERKN 626

Query: 131 -NLAEVCRSMLHASNVPGRFWAECMRTVALVVNRLPQQRLEFKSPYEKLLNIKPTVGHF 189
            +LAEVCRSMLHA NVPGRFWAE MRT A V+NRLPQ RLEF SP+EKL N+KPTV +F
Sbjct: 627 RHLAEVCRSMLHAKNVPGRFWAEAMRTAAFVINRLPQPRLEFVSPFEKLWNMKPTVSYF 685

[Close]

BLAST of Cmc10g0275041 vs. ExPASy TrEMBL
Match: A0A2N9H7W6 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS35877 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 2.4e-67
Identity = 128/179 (71.51%), Postives = 148/179 (82.68%), Query Frame = 0


Query: 11  YHSRSPNSKQPLELMHSNVFGPVKQSSISGMRYMVTFIDDFSRYVWVFFIKEKSKTITEF 70
           Y      +K+PLEL+HS+VFGPVKQ SI GMRYMVTFIDDFSRYVWVFF+KEKS T ++F
Sbjct: 509 YEESKFKAKEPLELVHSDVFGPVKQPSIGGMRYMVTFIDDFSRYVWVFFMKEKSDTFSKF 568

Query: 71  KEFKEQVENELGKRIQCLRSDNGREYISNEFSQYLYKYKIYHHLTCPNTPQQNGVAERKN 130
           KEF+E  E E+GK+I CLR+DNG EY S+EFSQYL + +I H  TC NTPQQNG+AERKN
Sbjct: 569 KEFRESAEGEVGKKIGCLRTDNGGEYSSSEFSQYLRECRIRHQYTCANTPQQNGIAERKN 628

Query: 131 -NLAEVCRSMLHASNVPGRFWAECMRTVALVVNRLPQQRLEFKSPYEKLLNIKPTVGHF 189
            +LAEVCRSMLHA NVPGRFWAE MRT A V+NRLPQ RLEF SP+EKL N+KPTV +F
Sbjct: 629 RHLAEVCRSMLHAKNVPGRFWAEAMRTAAFVINRLPQPRLEFVSPFEKLWNMKPTVSYF 687

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BLAST of Cmc10g0275041 vs. ExPASy TrEMBL
Match: A0A2N9HV29 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45729 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 2.4e-67
Identity = 128/179 (71.51%), Postives = 148/179 (82.68%), Query Frame = 0


Query: 11  YHSRSPNSKQPLELMHSNVFGPVKQSSISGMRYMVTFIDDFSRYVWVFFIKEKSKTITEF 70
           Y      +K+PLEL+HS+VFGPVKQ SI GMRYMVTFIDDFSRYVWVFF+KEKS T ++F
Sbjct: 509 YEESKFKAKEPLELVHSDVFGPVKQPSIGGMRYMVTFIDDFSRYVWVFFMKEKSDTFSKF 568

Query: 71  KEFKEQVENELGKRIQCLRSDNGREYISNEFSQYLYKYKIYHHLTCPNTPQQNGVAERKN 130
           KEF+E  E E+GK+I CLR+DNG EY S+EFSQYL + +I H  TC NTPQQNG+AERKN
Sbjct: 569 KEFRESAEGEVGKKIGCLRTDNGGEYSSSEFSQYLRECRIRHQYTCANTPQQNGIAERKN 628

Query: 131 -NLAEVCRSMLHASNVPGRFWAECMRTVALVVNRLPQQRLEFKSPYEKLLNIKPTVGHF 189
            +LAEVCRSMLHA NVPGRFWAE MRT A V+NRLPQ RLEF SP+EKL N+KPTV +F
Sbjct: 629 RHLAEVCRSMLHAKNVPGRFWAEAMRTAAFVINRLPQPRLEFVSPFEKLWNMKPTVSYF 687

The following BLAST results are available for this feature:

BLAST of Cmc10g0275041 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8673149.1	4.2e-66	71.51	hypothetical protein F3Y22_tig00111810pilonHSYRG00151 [Hibiscus syriacus]	[more]
KAE8705435.1	4.2e-66	71.51	hypothetical protein F3Y22_tig00110429pilonHSYRG01243 [Hibiscus syriacus]	[more]
KAE8726439.1	4.2e-66	71.51	hypothetical protein F3Y22_tig00006888pilonHSYRG00009 [Hibiscus syriacus]	[more]
KAE8687058.1	4.2e-66	71.51	hypothetical protein F3Y22_tig00111024pilonHSYRG00006 [Hibiscus syriacus]	[more]
KAE8715296.1	4.2e-66	71.51	hypothetical protein F3Y22_tig00110183pilonHSYRG00102 [Hibiscus syriacus]	[more]

BLAST of Cmc10g0275041 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.1e-32	40.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.4e-27	37.79	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	4.5e-23	35.03	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	5.0e-22	34.32	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q12337	4.7e-12	26.28	Transposon Ty2-GR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ...	[more]

BLAST of Cmc10g0275041 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2N9HY88	8.2e-68	72.07	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS46758 PE=4 SV=1	[more]
A0A2N9HXV3	1.1e-67	72.07	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS44817 PE=4 SV=1	[more]
A0A2N9IT58	2.4e-67	71.51	Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB...	[more]
A0A2N9H7W6	2.4e-67	71.51	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS35877 PE=4 SV=1	[more]
A0A2N9HV29	2.4e-67	71.51	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45729 PE=4 SV=1	[more]

BLAST of Cmc10g0275041 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 20..120 e-value: 2.1E-12 score: 47.2
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 17..182 score: 21.58275
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 13..187 e-value: 3.8E-38 score: 132.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 16..159
None	No IPR available	PANTHER	PTHR11439:SF324	RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN, GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 16..159
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 20..186

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc10g0275041.1	Cmc10g0275041.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding