Cmc10g0274701 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc10g0274701
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr10: 8506830 .. 8507381 (+)
RNA-Seq Expression	Cmc10g0274701
Synteny	Cmc10g0274701

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGATGTGGACTGTGACCAATGGATCAAAGTCATGGACCTCGAAATGGAATCTATGTATTCCAATTCTGTCTGGACTCTAGTAGATCAACCAAACAATGTAAAACCTATTGCTTGTAAATGGATCTACAAGAGAAAACGAGACCAAGCTGGTAAAGTACAAACTTTCCAAGCTCGACTAGTGGCAAAAGGTTATACACAAAAGGAGGGAATAGATTATGAAGAAACTTTCTCTCCTGTTGCCATGATAAAGTCAATTAGAATAATCTTATCCATCGCCACTTTTTATGATTATGAAATTTGGCATATGGATGTCAAGACAACCTTTTTAAATGGAAATCTTAAAGAGAGTATCTATATGGTTCAACCAGAGGGGTTTATACAAAAGGGTCAAGAACAAAAGGTTTATAAGCTTCAAAAATTCTTTTATGGATTAAAACAAGCATCTAGATCTTGGAATATAAGATTTGATACTGCGATCAAATCTTATTGTTTTGAACAAAATGTTGATGAACCTTGTATTTACAAAAGGTCATCAATTCCACTGTAG

mRNA sequence

ATGAATGATGTGGACTGTGACCAATGGATCAAAGTCATGGACCTCGAAATGGAATCTATGTATTCCAATTCTGTCTGGACTCTAGTAGATCAACCAAACAATGTAAAACCTATTGCTTGTAAATGGATCTACAAGAGAAAACGAGACCAAGCTGGTAAAGTACAAACTTTCCAAGCTCGACTAGTGGCAAAAGGTTATACACAAAAGGAGGGAATAGATTATGAAGAAACTTTCTCTCCTGTTGCCATGATAAAGTCAATTAGAATAATCTTATCCATCGCCACTTTTTATGATTATGAAATTTGGCATATGGATGTCAAGACAACCTTTTTAAATGGAAATCTTAAAGAGAGTATCTATATGGTTCAACCAGAGGGGTTTATACAAAAGGGTCAAGAACAAAAGGTTTATAAGCTTCAAAAATTCTTTTATGGATTAAAACAAGCATCTAGATCTTGGAATATAAGATTTGATACTGCGATCAAATCTTATTGTTTTGAACAAAATGTTGATGAACCTTGTATTTACAAAAGGTCATCAATTCCACTGTAG

Coding sequence (CDS)

ATGAATGATGTGGACTGTGACCAATGGATCAAAGTCATGGACCTCGAAATGGAATCTATGTATTCCAATTCTGTCTGGACTCTAGTAGATCAACCAAACAATGTAAAACCTATTGCTTGTAAATGGATCTACAAGAGAAAACGAGACCAAGCTGGTAAAGTACAAACTTTCCAAGCTCGACTAGTGGCAAAAGGTTATACACAAAAGGAGGGAATAGATTATGAAGAAACTTTCTCTCCTGTTGCCATGATAAAGTCAATTAGAATAATCTTATCCATCGCCACTTTTTATGATTATGAAATTTGGCATATGGATGTCAAGACAACCTTTTTAAATGGAAATCTTAAAGAGAGTATCTATATGGTTCAACCAGAGGGGTTTATACAAAAGGGTCAAGAACAAAAGGTTTATAAGCTTCAAAAATTCTTTTATGGATTAAAACAAGCATCTAGATCTTGGAATATAAGATTTGATACTGCGATCAAATCTTATTGTTTTGAACAAAATGTTGATGAACCTTGTATTTACAAAAGGTCATCAATTCCACTGTAG

Protein sequence

MNDVDCDQWIKVMDLEMESMYSNSVWTLVDQPNNVKPIACKWIYKRKRDQAGKVQTFQARLVAKGYTQKEGIDYEETFSPVAMIKSIRIILSIATFYDYEIWHMDVKTTFLNGNLKESIYMVQPEGFIQKGQEQKVYKLQKFFYGLKQASRSWNIRFDTAIKSYCFEQNVDEPCIYKRSSIPL

Homology

[Close]

BLAST of Cmc10g0274701 vs. NCBI nr
Match: KAA0045356.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 331.3 bits (848), Expect = 5.4e-87
Identity = 157/177 (88.70%), Postives = 165/177 (93.22%), Query Frame = 0


Query: 2   NDVDCDQWIKVMDLEMESMYSNSVWTLVDQPNNVKPIACKWIYKRKRDQAGKVQTFQARL 61
           NDVD DQWIK MDL+MESMYSNSVWTLVDQPNN++PI CKWIYKRKRDQ  KVQTF+ARL
Sbjct: 143 NDVDSDQWIKAMDLKMESMYSNSVWTLVDQPNNIRPIGCKWIYKRKRDQTAKVQTFRARL 202

Query: 62  VAKGYTQKEGIDYEETFSPVAMIKSIRIILSIATFYDYEIWHMDVKTTFLNGNLKESIYM 121
           VAKGYTQKEGIDYEETFSP+AMIKSIRI+LSIATFYDYEIW MDVKT FLNGNL+ESIYM
Sbjct: 203 VAKGYTQKEGIDYEETFSPIAMIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYM 262

Query: 122 VQPEGFIQKGQEQKVYKLQKFFYGLKQASRSWNIRFDTAIKSYCFEQNVDEPCIYKR 179
           VQPEGFIQKGQEQKV KLQK  YGLKQASRSWNIRFDT IKSY FEQNVDEPC+YKR
Sbjct: 263 VQPEGFIQKGQEQKVCKLQKSIYGLKQASRSWNIRFDTGIKSYGFEQNVDEPCVYKR 319

[Close]

BLAST of Cmc10g0274701 vs. NCBI nr
Match: ADJ18449.1 (gag/pol protein, partial [Bryonia dioica])

HSP 1 Score: 319.7 bits (818), Expect = 1.6e-83
Identity = 153/178 (85.96%), Postives = 165/178 (92.70%), Query Frame = 0


Query: 1   MNDVDCDQWIKVMDLEMESMYSNSVWTLVDQPNNVKPIACKWIYKRKRDQAGKVQTFQAR 60
           MNDVD DQWIK M+LEMESMY NSVWTLVD P++VKPI CKWIYKRKRDQAGKVQTF+AR
Sbjct: 812 MNDVDRDQWIKAMNLEMESMYFNSVWTLVDLPSDVKPIGCKWIYKRKRDQAGKVQTFKAR 871

Query: 61  LVAKGYTQKEGIDYEETFSPVAMIKSIRIILSIATFYDYEIWHMDVKTTFLNGNLKESIY 120
           LVAKGYTQKEG+DYEETFSPVAM+KSIRI+LSIATFY+YEIW MDVKT FLNGNL+ESIY
Sbjct: 872 LVAKGYTQKEGVDYEETFSPVAMLKSIRILLSIATFYNYEIWQMDVKTAFLNGNLEESIY 931

Query: 121 MVQPEGFIQKGQEQKVYKLQKFFYGLKQASRSWNIRFDTAIKSYCFEQNVDEPCIYKR 179
           MVQPEGFI + QEQKV KLQK  YGLKQASRSWNIRFDTAIKSY FEQNVDEPC+YK+
Sbjct: 932 MVQPEGFIAQDQEQKVCKLQKSIYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKK 989

[Close]

BLAST of Cmc10g0274701 vs. NCBI nr
Match: KAA0043610.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 317.0 bits (811), Expect = 1.1e-82
Identity = 150/178 (84.27%), Postives = 163/178 (91.57%), Query Frame = 0


Query: 1   MNDVDCDQWIKVMDLEMESMYSNSVWTLVDQPNNVKPIACKWIYKRKRDQAGKVQTFQAR 60
           MNDVDCDQW+K MDL++ESMYSNSVWTLVDQ N+VK I CKWIYKRKRDQAGKVQTF+AR
Sbjct: 1   MNDVDCDQWVKAMDLKIESMYSNSVWTLVDQSNDVKLIGCKWIYKRKRDQAGKVQTFKAR 60

Query: 61  LVAKGYTQKEGIDYEETFSPVAMIKSIRIILSIATFYDYEIWHMDVKTTFLNGNLKESIY 120
           LV KGY +KEG++Y+ETFSPV M+KSIRI+LSI TFYDYEI  MDVKT FLNGNL+ESIY
Sbjct: 61  LVGKGYIEKEGVNYKETFSPVVMLKSIRILLSIPTFYDYEICQMDVKTAFLNGNLEESIY 120

Query: 121 MVQPEGFIQKGQEQKVYKLQKFFYGLKQASRSWNIRFDTAIKSYCFEQNVDEPCIYKR 179
           MVQPEGFIQKGQEQKVYKLQK  YGLKQASRSWNIRFDTAIKSY FE NVDEPC+YKR
Sbjct: 121 MVQPEGFIQKGQEQKVYKLQKSIYGLKQASRSWNIRFDTAIKSYGFEHNVDEPCVYKR 178

[Close]

BLAST of Cmc10g0274701 vs. NCBI nr
Match: TYK03644.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 316.6 bits (810), Expect = 1.4e-82
Identity = 157/178 (88.20%), Postives = 163/178 (91.57%), Query Frame = 0


Query: 1   MNDVDCDQWIKVMDLEMESMYSNSVWTLVDQPNNVKPIACKWIYKRKRDQAGKVQTFQAR 60
           MNDVD DQWIK MDLEMESMYSNSVWTLVDQPN+VKPI CKWIYKRKRDQAGKVQTF+AR
Sbjct: 237 MNDVDRDQWIKAMDLEMESMYSNSVWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKAR 296

Query: 61  LVAKGYTQKEGIDYEETFSPVAMIKSIRIILSIATFYDYEIWHMDVKTTFLNGNLKESIY 120
           LVAKGYTQKEGIDYEE FS  AMIKSIRI+LSIATFYDYEIW MDVKTTFLN NL+ESIY
Sbjct: 297 LVAKGYTQKEGIDYEEVFS-FAMIKSIRILLSIATFYDYEIWQMDVKTTFLNANLEESIY 356

Query: 121 MVQPEGFIQKGQEQKVYKLQKFFYGLKQASRSWNIRFDTAIKSYCFEQNVDEPCIYKR 179
           MVQPE FIQKGQEQK+ KLQK  YGLKQASRS NIRFDTAIKSY  EQNVDEPC+YKR
Sbjct: 357 MVQPERFIQKGQEQKICKLQKSIYGLKQASRSCNIRFDTAIKSYGLEQNVDEPCVYKR 413

[Close]

BLAST of Cmc10g0274701 vs. NCBI nr
Match: TYK15984.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 311.6 bits (797), Expect = 4.5e-81
Identity = 147/178 (82.58%), Postives = 160/178 (89.89%), Query Frame = 0


Query: 1   MNDVDCDQWIKVMDLEMESMYSNSVWTLVDQPNNVKPIACKWIYKRKRDQAGKVQTFQAR 60
           MNDVD DQW+K MDLEMESMY NSVW LVD P  VKPI CKWIYKRKRD AGKVQTF+AR
Sbjct: 330 MNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKAR 389

Query: 61  LVAKGYTQKEGIDYEETFSPVAMIKSIRIILSIATFYDYEIWHMDVKTTFLNGNLKESIY 120
           LVAKGYTQ+EG+DYEETFSPVAM+KSIRI+LSIATFYDYEIW MDVKT FLNGNL+ESI+
Sbjct: 390 LVAKGYTQREGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIF 449

Query: 121 MVQPEGFIQKGQEQKVYKLQKFFYGLKQASRSWNIRFDTAIKSYCFEQNVDEPCIYKR 179
           M QPEGFI +GQEQKV KL +  YGLKQASRSWNIRFDTAIKSY F+QNVDEPC+YK+
Sbjct: 450 MSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKK 507

[Close]

BLAST of Cmc10g0274701 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 7.2e-42
Identity = 81/170 (47.65%), Postives = 115/170 (67.65%), Query Frame = 0


Query: 7   DQWIKVMDLEMESMYSNSVWTLVDQPNNVKPIACKWIYKRKRDQAGKVQTFQARLVAKGY 66
           +Q +K M  EMES+  N  + LV+ P   +P+ CKW++K K+D   K+  ++ARLV KG+
Sbjct: 824 NQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGF 883

Query: 67  TQKEGIDYEETFSPVAMIKSIRIILSIATFYDYEIWHMDVKTTFLNGNLKESIYMVQPEG 126
            QK+GID++E FSPV  + SIR ILS+A   D E+  +DVKT FL+G+L+E IYM QPEG
Sbjct: 884 EQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEG 943

Query: 127 FIQKGQEQKVYKLQKFFYGLKQASRSWNIRFDTAIKSYCFEQNVDEPCIY 177
           F   G++  V KL K  YGLKQA R W ++FD+ +KS  + +   +PC+Y
Sbjct: 944 FEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVY 993

[Close]

BLAST of Cmc10g0274701 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 141.7 bits (356), Expect = 8.0e-33
Identity = 73/172 (42.44%), Postives = 102/172 (59.30%), Query Frame = 0


Query: 5    DCDQWIKVMDLEMESMYSNSVWTLVDQPNNVKPIACKWIYKRKRDQAGKVQTFQARLVAK 64
            D   W + ++ E+ +   N+ WT+  +P N   +  +W++  K ++ G    ++ARLVA+
Sbjct: 902  DKSSWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVAR 961

Query: 65   GYTQKEGIDYEETFSPVAMIKSIRIILSIATFYDYEIWHMDVKTTFLNGNLKESIYMVQP 124
            G+TQK  IDYEETF+PVA I S R ILS+   Y+ ++  MDVKT FLNG LKE IYM  P
Sbjct: 962  GFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLP 1021

Query: 125  EGFIQKGQEQKVYKLQKFFYGLKQASRSWNIRFDTAIKSYCFEQNVDEPCIY 177
            +G         V KL K  YGLKQA+R W   F+ A+K   F  +  + CIY
Sbjct: 1022 QGI--SCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIY 1071

[Close]

BLAST of Cmc10g0274701 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 8.9e-32
Identity = 66/171 (38.60%), Postives = 100/171 (58.48%), Query Frame = 0


Query: 7    DQWIKVMDLEMESMYSNSVWTLV-DQPNNVKPIACKWIYKRKRDQAGKVQTFQARLVAKG 66
            D+W + M  E+ +   N  W LV   P +V  + C+WI+ +K +  G +  ++ARLVAKG
Sbjct: 949  DRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKG 1008

Query: 67   YTQKEGIDYEETFSPVAMIKSIRIILSIATFYDYEIWHMDVKTTFLNGNLKESIYMVQPE 126
            Y Q+ G+DY ETFSPV    SIRI+L +A    + I  +DV   FL G L + +YM QP 
Sbjct: 1009 YNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPP 1068

Query: 127  GFIQKGQEQKVYKLQKFFYGLKQASRSWNIRFDTAIKSYCFEQNVDEPCIY 177
            GF+ K +   V +L+K  YGLKQA R+W +   T + +  F  ++ +  ++
Sbjct: 1069 GFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTVGFVNSISDTSLF 1119

[Close]

BLAST of Cmc10g0274701 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.2e-31
Identity = 67/171 (39.18%), Postives = 99/171 (57.89%), Query Frame = 0


Query: 7    DQWIKVMDLEMESMYSNSVWTLV-DQPNNVKPIACKWIYKRKRDQAGKVQTFQARLVAKG 66
            ++W   M  E+ +   N  W LV   P++V  + C+WI+ +K +  G +  ++ARLVAKG
Sbjct: 966  ERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKG 1025

Query: 67   YTQKEGIDYEETFSPVAMIKSIRIILSIATFYDYEIWHMDVKTTFLNGNLKESIYMVQPE 126
            Y Q+ G+DY ETFSPV    SIRI+L +A    + I  +DV   FL G L + +YM QP 
Sbjct: 1026 YNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPP 1085

Query: 127  GFIQKGQEQKVYKLQKFFYGLKQASRSWNIRFDTAIKSYCFEQNVDEPCIY 177
            GFI K +   V KL+K  YGLKQA R+W +     + +  F  +V +  ++
Sbjct: 1086 GFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLF 1136

[Close]

BLAST of Cmc10g0274701 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.9e-14
Identity = 36/86 (41.86%), Postives = 53/86 (61.63%), Query Frame = 0


Query: 9   WIKVMDLEMESMYSNSVWTLVDQPNNVKPIACKWIYKRKRDQAGKVQTFQARLVAKGYTQ 68
           W + M  E++++  N  W LV  P N   + CKW++K K    G +   +ARLVAKG+ Q
Sbjct: 40  WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQ 99

Query: 69  KEGIDYEETFSPVAMIKSIRIILSIA 95
           +EGI + ET+SPV    +IR IL++A
Sbjct: 100 EEGIYFVETYSPVVRTATIRTILNVA 125

[Close]

BLAST of Cmc10g0274701 vs. ExPASy TrEMBL
Match: A0A5A7TTA2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G001350 PE=4 SV=1)

HSP 1 Score: 331.3 bits (848), Expect = 2.6e-87
Identity = 157/177 (88.70%), Postives = 165/177 (93.22%), Query Frame = 0


Query: 2   NDVDCDQWIKVMDLEMESMYSNSVWTLVDQPNNVKPIACKWIYKRKRDQAGKVQTFQARL 61
           NDVD DQWIK MDL+MESMYSNSVWTLVDQPNN++PI CKWIYKRKRDQ  KVQTF+ARL
Sbjct: 143 NDVDSDQWIKAMDLKMESMYSNSVWTLVDQPNNIRPIGCKWIYKRKRDQTAKVQTFRARL 202

Query: 62  VAKGYTQKEGIDYEETFSPVAMIKSIRIILSIATFYDYEIWHMDVKTTFLNGNLKESIYM 121
           VAKGYTQKEGIDYEETFSP+AMIKSIRI+LSIATFYDYEIW MDVKT FLNGNL+ESIYM
Sbjct: 203 VAKGYTQKEGIDYEETFSPIAMIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYM 262

Query: 122 VQPEGFIQKGQEQKVYKLQKFFYGLKQASRSWNIRFDTAIKSYCFEQNVDEPCIYKR 179
           VQPEGFIQKGQEQKV KLQK  YGLKQASRSWNIRFDT IKSY FEQNVDEPC+YKR
Sbjct: 263 VQPEGFIQKGQEQKVCKLQKSIYGLKQASRSWNIRFDTGIKSYGFEQNVDEPCVYKR 319

[Close]

BLAST of Cmc10g0274701 vs. ExPASy TrEMBL
Match: E2GK51 (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 7.9e-84
Identity = 153/178 (85.96%), Postives = 165/178 (92.70%), Query Frame = 0


Query: 1   MNDVDCDQWIKVMDLEMESMYSNSVWTLVDQPNNVKPIACKWIYKRKRDQAGKVQTFQAR 60
           MNDVD DQWIK M+LEMESMY NSVWTLVD P++VKPI CKWIYKRKRDQAGKVQTF+AR
Sbjct: 812 MNDVDRDQWIKAMNLEMESMYFNSVWTLVDLPSDVKPIGCKWIYKRKRDQAGKVQTFKAR 871

Query: 61  LVAKGYTQKEGIDYEETFSPVAMIKSIRIILSIATFYDYEIWHMDVKTTFLNGNLKESIY 120
           LVAKGYTQKEG+DYEETFSPVAM+KSIRI+LSIATFY+YEIW MDVKT FLNGNL+ESIY
Sbjct: 872 LVAKGYTQKEGVDYEETFSPVAMLKSIRILLSIATFYNYEIWQMDVKTAFLNGNLEESIY 931

Query: 121 MVQPEGFIQKGQEQKVYKLQKFFYGLKQASRSWNIRFDTAIKSYCFEQNVDEPCIYKR 179
           MVQPEGFI + QEQKV KLQK  YGLKQASRSWNIRFDTAIKSY FEQNVDEPC+YK+
Sbjct: 932 MVQPEGFIAQDQEQKVCKLQKSIYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKK 989

[Close]

BLAST of Cmc10g0274701 vs. ExPASy TrEMBL
Match: A0A5A7TK28 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold320G00480 PE=4 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 5.1e-83
Identity = 150/178 (84.27%), Postives = 163/178 (91.57%), Query Frame = 0


Query: 1   MNDVDCDQWIKVMDLEMESMYSNSVWTLVDQPNNVKPIACKWIYKRKRDQAGKVQTFQAR 60
           MNDVDCDQW+K MDL++ESMYSNSVWTLVDQ N+VK I CKWIYKRKRDQAGKVQTF+AR
Sbjct: 1   MNDVDCDQWVKAMDLKIESMYSNSVWTLVDQSNDVKLIGCKWIYKRKRDQAGKVQTFKAR 60

Query: 61  LVAKGYTQKEGIDYEETFSPVAMIKSIRIILSIATFYDYEIWHMDVKTTFLNGNLKESIY 120
           LV KGY +KEG++Y+ETFSPV M+KSIRI+LSI TFYDYEI  MDVKT FLNGNL+ESIY
Sbjct: 61  LVGKGYIEKEGVNYKETFSPVVMLKSIRILLSIPTFYDYEICQMDVKTAFLNGNLEESIY 120

Query: 121 MVQPEGFIQKGQEQKVYKLQKFFYGLKQASRSWNIRFDTAIKSYCFEQNVDEPCIYKR 179
           MVQPEGFIQKGQEQKVYKLQK  YGLKQASRSWNIRFDTAIKSY FE NVDEPC+YKR
Sbjct: 121 MVQPEGFIQKGQEQKVYKLQKSIYGLKQASRSWNIRFDTAIKSYGFEHNVDEPCVYKR 178

[Close]

BLAST of Cmc10g0274701 vs. ExPASy TrEMBL
Match: A0A5D3BX45 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00740 PE=4 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 6.7e-83
Identity = 157/178 (88.20%), Postives = 163/178 (91.57%), Query Frame = 0


Query: 1   MNDVDCDQWIKVMDLEMESMYSNSVWTLVDQPNNVKPIACKWIYKRKRDQAGKVQTFQAR 60
           MNDVD DQWIK MDLEMESMYSNSVWTLVDQPN+VKPI CKWIYKRKRDQAGKVQTF+AR
Sbjct: 237 MNDVDRDQWIKAMDLEMESMYSNSVWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKAR 296

Query: 61  LVAKGYTQKEGIDYEETFSPVAMIKSIRIILSIATFYDYEIWHMDVKTTFLNGNLKESIY 120
           LVAKGYTQKEGIDYEE FS  AMIKSIRI+LSIATFYDYEIW MDVKTTFLN NL+ESIY
Sbjct: 297 LVAKGYTQKEGIDYEEVFS-FAMIKSIRILLSIATFYDYEIWQMDVKTTFLNANLEESIY 356

Query: 121 MVQPEGFIQKGQEQKVYKLQKFFYGLKQASRSWNIRFDTAIKSYCFEQNVDEPCIYKR 179
           MVQPE FIQKGQEQK+ KLQK  YGLKQASRS NIRFDTAIKSY  EQNVDEPC+YKR
Sbjct: 357 MVQPERFIQKGQEQKICKLQKSIYGLKQASRSCNIRFDTAIKSYGLEQNVDEPCVYKR 413

[Close]

BLAST of Cmc10g0274701 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 2.2e-81
Identity = 147/178 (82.58%), Postives = 160/178 (89.89%), Query Frame = 0


Query: 1   MNDVDCDQWIKVMDLEMESMYSNSVWTLVDQPNNVKPIACKWIYKRKRDQAGKVQTFQAR 60
           MNDVD DQW+K MDLEMESMY NSVW LVD P  VKPI CKWIYKRKRD AGKVQTF+AR
Sbjct: 720 MNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKAR 779

Query: 61  LVAKGYTQKEGIDYEETFSPVAMIKSIRIILSIATFYDYEIWHMDVKTTFLNGNLKESIY 120
           LVAKGYTQ+EG+DYEETFSPVAM+KSIRI+LSIATFYDYEIW MDVKT FLNGNL+ESI+
Sbjct: 780 LVAKGYTQREGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIF 839

Query: 121 MVQPEGFIQKGQEQKVYKLQKFFYGLKQASRSWNIRFDTAIKSYCFEQNVDEPCIYKR 179
           M QPEGFI +GQEQKV KL +  YGLKQASRSWNIRFDTAIKSY F+QNVDEPC+YK+
Sbjct: 840 MSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKK 897

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BLAST of Cmc10g0274701 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 147.1 bits (370), Expect = 1.4e-35
Identity = 70/165 (42.42%), Postives = 103/165 (62.42%), Query Frame = 0


Query: 9   WIKVMDLEMESMYSNSVWTLVDQPNNVKPIACKWIYKRKRDQAGKVQTFQARLVAKGYTQ 68
           W   MD E+ +M +   W +   P N KPI CKW+YK K +  G ++ ++ARLVAKGYTQ
Sbjct: 98  WCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQ 157

Query: 69  KEGIDYEETFSPVAMIKSIRIILSIATFYDYEIWHMDVKTTFLNGNLKESIYMVQPEGFI 128
           +EGID+ ETFSPV  + S+++IL+I+  Y++ +  +D+   FLNG+L E IYM  P G+ 
Sbjct: 158 QEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYA 217

Query: 129 QKGQE----QKVYKLQKFFYGLKQASRSWNIRFDTAIKSYCFEQN 170
            +  +      V  L+K  YGLKQASR W ++F   +  + F Q+
Sbjct: 218 ARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQS 262

[Close]

BLAST of Cmc10g0274701 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 79.3 bits (194), Expect = 3.5e-15
Identity = 36/86 (41.86%), Postives = 53/86 (61.63%), Query Frame = 0


Query: 9   WIKVMDLEMESMYSNSVWTLVDQPNNVKPIACKWIYKRKRDQAGKVQTFQARLVAKGYTQ 68
           W + M  E++++  N  W LV  P N   + CKW++K K    G +   +ARLVAKG+ Q
Sbjct: 40  WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQ 99

Query: 69  KEGIDYEETFSPVAMIKSIRIILSIA 95
           +EGI + ET+SPV    +IR IL++A
Sbjct: 100 EEGIYFVETYSPVVRTATIRTILNVA 125

The following BLAST results are available for this feature:

BLAST of Cmc10g0274701 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0045356.1	5.4e-87	88.70	gag/pol protein [Cucumis melo var. makuwa]	[more]
ADJ18449.1	1.6e-83	85.96	gag/pol protein, partial [Bryonia dioica]	[more]
KAA0043610.1	1.1e-82	84.27	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK03644.1	1.4e-82	88.20	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK15984.1	4.5e-81	82.58	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc10g0274701 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	7.2e-42	47.65	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	8.0e-33	42.44	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	8.9e-32	38.60	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.2e-31	39.18	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P92520	4.9e-14	41.86	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc10g0274701 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TTA2	2.6e-87	88.70	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G0013...	[more]
E2GK51	7.9e-84	85.96	Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1	[more]
A0A5A7TK28	5.1e-83	84.27	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold320G0048...	[more]
A0A5D3BX45	6.7e-83	88.20	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G007...	[more]
A0A5A7TZD0	2.2e-81	82.58	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]

BLAST of Cmc10g0274701 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.4e-35	42.42	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	3.5e-15	41.86	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 23..179 e-value: 3.7E-52 score: 177.3
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 6..177
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 23..166

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc10g0274701.1	Cmc10g0274701.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding