Cmc10g0273891 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc10g0273891
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr10: 7445189 .. 7445929 (-)
RNA-Seq Expression	Cmc10g0273891
Synteny	Cmc10g0273891

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGAATAACATAATCAACAAATATTTCCTTGATAATGGGTATTTGAGGTGCCCTTATGAACATTCTCTTTATATTAAGGTTAATGGTCATGGAGATATTTTGGTAGTTTGTTTGTACGTGGATGACTTAATTTTTACAGGAAATTGTACAAGTATGTTTAAAGATCTCAAGAACACGATGACCCAAGAATTCGAAATGACAGATATAGGGCTAATGTCATATTATCTTAGCATTGAAGTGAAGCAGTCAGAGGAAGGAATTTTCATCTCTCAAGAACGATATACTAGAGAAATTCTAGAGAAGTTTAATATGATGAATTCTAAGTCTGTCGCAACTCCGATTGAAACTGGGACCAAACTGTCCAAACATGAAGAAGGAGATGATGTTGAACTTTCATATTTCAAAAGTTTGGTTAGGAGTTTGAGATATTTGACTTGCACACAACCAGATATTCTTTTCAGAGTTGGATTGGTGAGTCTATTTATGGAATCTCCTACAACTACTCATTGGAAAGTGGCAAAGAGAATTCTTCGTTACCTTAGAGGTACGCTTGACTATGGGTTGTTTTATTCTTCATCTAAAGAATTCAAGCTTGAAGGCTATTGTGATAGTGACTGGGCTGGAGATACTGATGATCGAAAGAGCACTAGTCAATATGTTTTCTTCGTTGGGAATACTGCATTTACATGGAGTTCTAAGAAGCAACCTATTGTGACATTATCCACTTGTGAGGCATAA

mRNA sequence

ATGTGGAATAACATAATCAACAAATATTTCCTTGATAATGGGTATTTGAGGTGCCCTTATGAACATTCTCTTTATATTAAGGTTAATGGTCATGGAGATATTTTGGTAGTTTGTTTGTACGTGGATGACTTAATTTTTACAGGAAATTGTACAAGTATGTTTAAAGATCTCAAGAACACGATGACCCAAGAATTCGAAATGACAGATATAGGGCTAATGTCATATTATCTTAGCATTGAAGTGAAGCAGTCAGAGGAAGGAATTTTCATCTCTCAAGAACGATATACTAGAGAAATTCTAGAGAAGTTTAATATGATGAATTCTAAGTCTGTCGCAACTCCGATTGAAACTGGGACCAAACTGTCCAAACATGAAGAAGGAGATGATGTTGAACTTTCATATTTCAAAAGTTTGGTTAGGAGTTTGAGATATTTGACTTGCACACAACCAGATATTCTTTTCAGAGTTGGATTGGTGAGTCTATTTATGGAATCTCCTACAACTACTCATTGGAAAGTGGCAAAGAGAATTCTTCGTTACCTTAGAGGTACGCTTGACTATGGGTTGTTTTATTCTTCATCTAAAGAATTCAAGCTTGAAGGCTATTGTGATAGTGACTGGGCTGGAGATACTGATGATCGAAAGAGCACTAGTCAATATGTTTTCTTCGTTGGGAATACTGCATTTACATGGAGTTCTAAGAAGCAACCTATTGTGACATTATCCACTTGTGAGGCATAA

Coding sequence (CDS)

ATGTGGAATAACATAATCAACAAATATTTCCTTGATAATGGGTATTTGAGGTGCCCTTATGAACATTCTCTTTATATTAAGGTTAATGGTCATGGAGATATTTTGGTAGTTTGTTTGTACGTGGATGACTTAATTTTTACAGGAAATTGTACAAGTATGTTTAAAGATCTCAAGAACACGATGACCCAAGAATTCGAAATGACAGATATAGGGCTAATGTCATATTATCTTAGCATTGAAGTGAAGCAGTCAGAGGAAGGAATTTTCATCTCTCAAGAACGATATACTAGAGAAATTCTAGAGAAGTTTAATATGATGAATTCTAAGTCTGTCGCAACTCCGATTGAAACTGGGACCAAACTGTCCAAACATGAAGAAGGAGATGATGTTGAACTTTCATATTTCAAAAGTTTGGTTAGGAGTTTGAGATATTTGACTTGCACACAACCAGATATTCTTTTCAGAGTTGGATTGGTGAGTCTATTTATGGAATCTCCTACAACTACTCATTGGAAAGTGGCAAAGAGAATTCTTCGTTACCTTAGAGGTACGCTTGACTATGGGTTGTTTTATTCTTCATCTAAAGAATTCAAGCTTGAAGGCTATTGTGATAGTGACTGGGCTGGAGATACTGATGATCGAAAGAGCACTAGTCAATATGTTTTCTTCGTTGGGAATACTGCATTTACATGGAGTTCTAAGAAGCAACCTATTGTGACATTATCCACTTGTGAGGCATAA

Protein sequence

MWNNIINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCTSMFKDLKNTMTQEFEMTDIGLMSYYLSIEVKQSEEGIFISQERYTREILEKFNMMNSKSVATPIETGTKLSKHEEGDDVELSYFKSLVRSLRYLTCTQPDILFRVGLVSLFMESPTTTHWKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTDDRKSTSQYVFFVGNTAFTWSSKKQPIVTLSTCEA

Homology

[Close]

BLAST of Cmc10g0273891 vs. NCBI nr
Match: KAA0062149.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 467.6 bits (1202), Expect = 6.5e-128
Identity = 229/246 (93.09%), Postives = 235/246 (95.53%), Query Frame = 0


Query: 1    MWNNIINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCTSMFKDLKNT 60
            MWN+ INKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNC SMF+DLKN 
Sbjct: 936  MWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKNA 995

Query: 61   MTQEFEMTDIGLMSYYLSIEVKQSEEGIFISQERYTREILEKFNMMNSKSVATPIETGTK 120
            MTQEFEMTDIGLMSYYL IEVKQSEEGIFISQERYTREILEKFNMMNSK VATPIETGTK
Sbjct: 996  MTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVATPIETGTK 1055

Query: 121  LSKHEEGDDVELSYFKSLVRSLRYLTCTQPDILFRVGLVSLFMESPTTTHWKVAKRILRY 180
            LSKHEEGDDV+ SYFKSLV SLRYLTCT+PDILF VGLVS FMESPTTTH KVAKRILRY
Sbjct: 1056 LSKHEEGDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSRFMESPTTTHLKVAKRILRY 1115

Query: 181  LRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTDDRKSTSQYVFFVGNTAFTWSSKKQPIVT 240
            LRGTLDYGLFYSSSKEFKLEGYCDSDWAGDT+DRKSTS YVFF+GNTAFTWSSKKQPIVT
Sbjct: 1116 LRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVT 1175

Query: 241  LSTCEA 247
            LSTCEA
Sbjct: 1176 LSTCEA 1181

[Close]

BLAST of Cmc10g0273891 vs. NCBI nr
Match: TYK13925.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 466.1 bits (1198), Expect = 1.9e-127
Identity = 228/246 (92.68%), Postives = 235/246 (95.53%), Query Frame = 0


Query: 1    MWNNIINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCTSMFKDLKNT 60
            MWN+ INKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNC SMF+DLK  
Sbjct: 981  MWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKKA 1040

Query: 61   MTQEFEMTDIGLMSYYLSIEVKQSEEGIFISQERYTREILEKFNMMNSKSVATPIETGTK 120
            MTQEFEMTDIGLMSYYL IEVKQSEEGIFISQERYTR+ILEKFNMMNSKSVATPIETGTK
Sbjct: 1041 MTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTRDILEKFNMMNSKSVATPIETGTK 1100

Query: 121  LSKHEEGDDVELSYFKSLVRSLRYLTCTQPDILFRVGLVSLFMESPTTTHWKVAKRILRY 180
            LSKHEEGDDV+ SYFKSLV SLRYLTCT+PDILF VGLVS FMESPTTTH KVAKRILRY
Sbjct: 1101 LSKHEEGDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSRFMESPTTTHLKVAKRILRY 1160

Query: 181  LRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTDDRKSTSQYVFFVGNTAFTWSSKKQPIVT 240
            LRGTLDYGLFYSSSKEFKLEGYCDSDWAGDT+DRKSTS YVFF+GNTAFTWSSKKQPIVT
Sbjct: 1161 LRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVT 1220

Query: 241  LSTCEA 247
            LSTCEA
Sbjct: 1221 LSTCEA 1226

[Close]

BLAST of Cmc10g0273891 vs. NCBI nr
Match: KAA0033083.1 (copia protein [Cucumis melo var. makuwa])

HSP 1 Score: 466.1 bits (1198), Expect = 1.9e-127
Identity = 228/246 (92.68%), Postives = 235/246 (95.53%), Query Frame = 0


Query: 1    MWNNIINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCTSMFKDLKNT 60
            MWN+ INKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNC SMF+DLK  
Sbjct: 811  MWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKKA 870

Query: 61   MTQEFEMTDIGLMSYYLSIEVKQSEEGIFISQERYTREILEKFNMMNSKSVATPIETGTK 120
            MTQEFEMTDIGLMSYYL IEVKQSEEGIFISQERYTR+ILEKFNMMNSKSVATPIETGTK
Sbjct: 871  MTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTRDILEKFNMMNSKSVATPIETGTK 930

Query: 121  LSKHEEGDDVELSYFKSLVRSLRYLTCTQPDILFRVGLVSLFMESPTTTHWKVAKRILRY 180
            LSKHEEGDDV+ SYFKSLV SLRYLTCT+PDILF VGLVS FMESPTTTH KVAKRILRY
Sbjct: 931  LSKHEEGDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSRFMESPTTTHLKVAKRILRY 990

Query: 181  LRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTDDRKSTSQYVFFVGNTAFTWSSKKQPIVT 240
            LRGTLDYGLFYSSSKEFKLEGYCDSDWAGDT+DRKSTS YVFF+GNTAFTWSSKKQPIVT
Sbjct: 991  LRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVT 1050

Query: 241  LSTCEA 247
            LSTCEA
Sbjct: 1051 LSTCEA 1056

[Close]

BLAST of Cmc10g0273891 vs. NCBI nr
Match: TYK18362.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 465.3 bits (1196), Expect = 3.2e-127
Identity = 228/246 (92.68%), Postives = 234/246 (95.12%), Query Frame = 0


Query: 1    MWNNIINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCTSMFKDLKNT 60
            MWN+ INKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNC SMF+DLK  
Sbjct: 981  MWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKKA 1040

Query: 61   MTQEFEMTDIGLMSYYLSIEVKQSEEGIFISQERYTREILEKFNMMNSKSVATPIETGTK 120
            MTQEFEMTDIGLMSYYL IEVKQSEEGIFISQERYTREILEKFNMMNSK VATPIETGTK
Sbjct: 1041 MTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVATPIETGTK 1100

Query: 121  LSKHEEGDDVELSYFKSLVRSLRYLTCTQPDILFRVGLVSLFMESPTTTHWKVAKRILRY 180
            LSKHEEGDDV+ SYFKSLV SLRYLTCT+PDILF VGLVS FMESPTTTH KVAKRILRY
Sbjct: 1101 LSKHEEGDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSRFMESPTTTHLKVAKRILRY 1160

Query: 181  LRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTDDRKSTSQYVFFVGNTAFTWSSKKQPIVT 240
            LRGTLDYGLFYSSSKEFKLEGYCDSDWAGDT+DRKSTS YVFF+GNTAFTWSSKKQPIVT
Sbjct: 1161 LRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVT 1220

Query: 241  LSTCEA 247
            LSTCEA
Sbjct: 1221 LSTCEA 1226

[Close]

BLAST of Cmc10g0273891 vs. NCBI nr
Match: KAA0047979.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 465.3 bits (1196), Expect = 3.2e-127
Identity = 228/246 (92.68%), Postives = 234/246 (95.12%), Query Frame = 0


Query: 1    MWNNIINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCTSMFKDLKNT 60
            MWN+ INKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNC SMF+DLK  
Sbjct: 981  MWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKKA 1040

Query: 61   MTQEFEMTDIGLMSYYLSIEVKQSEEGIFISQERYTREILEKFNMMNSKSVATPIETGTK 120
            MTQEFEMTDIGLMSYYL IEVKQSEEGIFISQERYTREILEKFNMMNSK VATPIETGTK
Sbjct: 1041 MTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVATPIETGTK 1100

Query: 121  LSKHEEGDDVELSYFKSLVRSLRYLTCTQPDILFRVGLVSLFMESPTTTHWKVAKRILRY 180
            LSKHEEGDDV+ SYFKSLV SLRYLTCT+PDILF VGLVS FMESPTTTH KVAKRILRY
Sbjct: 1101 LSKHEEGDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSRFMESPTTTHLKVAKRILRY 1160

Query: 181  LRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTDDRKSTSQYVFFVGNTAFTWSSKKQPIVT 240
            LRGTLDYGLFYSSSKEFKLEGYCDSDWAGDT+DRKSTS YVFF+GNTAFTWSSKKQPIVT
Sbjct: 1161 LRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVT 1220

Query: 241  LSTCEA 247
            LSTCEA
Sbjct: 1221 LSTCEA 1226

[Close]

BLAST of Cmc10g0273891 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.1e-45
Identity = 93/245 (37.96%), Postives = 145/245 (59.18%), Query Frame = 0


Query: 2    WNNIINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCTSMFKDLKNTM 61
            W   +  Y L  G++    + SL++   G   I+ + +YVDD++ TGN T + K   + +
Sbjct: 1096 WYVELRTYLLTVGFVNSISDTSLFVLQRGR-SIIYMLVYVDDILITGNDTVLLKHTLDAL 1155

Query: 62   TQEFEMTDIGLMSYYLSIEVKQSEEGIFISQERYTREILEKFNMMNSKSVATPIETGTKL 121
            +Q F + +   + Y+L IE K+  +G+ +SQ RYT ++L + NM+ +K VATP+ T  KL
Sbjct: 1156 SQRFSVKEHEDLHYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKL 1215

Query: 122  SKHEEGDDVELSYFKSLVRSLRYLTCTQPDILFRVGLVSLFMESPTTTHWKVAKRILRYL 181
            + H      + + ++ +V SL+YL  T+PD+ + V  +S +M  PT  HW   KR+LRYL
Sbjct: 1216 TLHSGTKLPDPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYL 1275

Query: 182  RGTLDYGLFYSSSKEFKLEGYCDSDWAGDTDDRKSTSQYVFFVGNTAFTWSSKKQPIVTL 241
             GT D+G+F        L  Y D+DWAGDTDD  ST+ Y+ ++G+   +WSSKKQ  V  
Sbjct: 1276 AGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVR 1335

Query: 242  STCEA 247
            S+ EA
Sbjct: 1336 SSTEA 1339

[Close]

BLAST of Cmc10g0273891 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 4.8e-41
Identity = 89/245 (36.33%), Postives = 140/245 (57.14%), Query Frame = 0


Query: 2    WNNIINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCTSMFKDLKNTM 61
            W   +  Y L  G++    + SL++   G   I+ + +YVDD++ TGN  ++  +  + +
Sbjct: 1113 WYVELRNYLLTIGFVNSVSDTSLFVLQRGK-SIVYMLVYVDDILITGNDPTLLHNTLDNL 1172

Query: 62   TQEFEMTDIGLMSYYLSIEVKQSEEGIFISQERYTREILEKFNMMNSKSVATPIETGTKL 121
            +Q F + D   + Y+L IE K+   G+ +SQ RY  ++L + NM+ +K V TP+    KL
Sbjct: 1173 SQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKL 1232

Query: 122  SKHEEGDDVELSYFKSLVRSLRYLTCTQPDILFRVGLVSLFMESPTTTHWKVAKRILRYL 181
            S +      + + ++ +V SL+YL  T+PDI + V  +S FM  PT  H +  KRILRYL
Sbjct: 1233 SLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYL 1292

Query: 182  RGTLDYGLFYSSSKEFKLEGYCDSDWAGDTDDRKSTSQYVFFVGNTAFTWSSKKQPIVTL 241
             GT ++G+F        L  Y D+DWAGD DD  ST+ Y+ ++G+   +WSSKKQ  V  
Sbjct: 1293 AGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVR 1352

Query: 242  STCEA 247
            S+ EA
Sbjct: 1353 SSTEA 1356

[Close]

BLAST of Cmc10g0273891 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 4.5e-39
Identity = 94/255 (36.86%), Postives = 144/255 (56.47%), Query Frame = 0


Query: 2    WNNIINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCTSMFKDLKNTM 61
            W    + +     YL+   +  +Y K     + +++ LYVDD++  G    +   LK  +
Sbjct: 970  WYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDL 1029

Query: 62   TQEFEMTDIGLMSYYLSIEV--KQSEEGIFISQERYTREILEKFNMMNSKSVATPIETGT 121
            ++ F+M D+G     L +++  +++   +++SQE+Y   +LE+FNM N+K V+TP+    
Sbjct: 1030 SKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHL 1089

Query: 122  KLSK-------HEEGDDVELSYFKSLVRSLRY-LTCTQPDILFRVGLVSLFMESPTTTHW 181
            KLSK        E+G+  ++ Y  S V SL Y + CT+PDI   VG+VS F+E+P   HW
Sbjct: 1090 KLSKKMCPTTVEEKGNMAKVPY-SSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHW 1149

Query: 182  KVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTDDRKSTSQYVFFVGNTAFTW 241
            +  K ILRYLRGT    L +  S    L+GY D+D AGD D+RKS++ Y+F     A +W
Sbjct: 1150 EAVKWILRYLRGTTGDCLCFGGSDPI-LKGYTDADMAGDIDNRKSSTGYLFTFSGGAISW 1209

Query: 242  SSKKQPIVTLSTCEA 247
             SK Q  V LST EA
Sbjct: 1210 QSKLQKCVALSTTEA 1222

[Close]

BLAST of Cmc10g0273891 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.2e-36
Identity = 75/215 (34.88%), Postives = 131/215 (60.93%), Query Frame = 0


Query: 35  LVVCLYVDDLIFTGNCTSMFKDLKNTMTQEFEMTDIGLMSYYLSIEVKQSEEGIFISQER 94
           + + LYVDD++ TG+  ++   L   ++  F M D+G + Y+L I++K    G+F+SQ +
Sbjct: 1   MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTK 60

Query: 95  YTREILEKFNMMNSKSVATP----IETGTKLSKHEEGDDVELSYFKSLVRSLRYLTCTQP 154
           Y  +IL    M++ K ++TP    + +    +K+ +  D     F+S+V +L+YLT T+P
Sbjct: 61  YAEQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSD-----FRSIVGALQYLTLTRP 120

Query: 155 DILFRVGLVSLFMESPTTTHWKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGD 214
           DI + V +V   M  PT   + + KR+LRY++GT+ +GL+   + +  ++ +CDSDWAG 
Sbjct: 121 DISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGC 180

Query: 215 TDDRKSTSQYVFFVGNTAFTWSSKKQPIVTLSTCE 246
           T  R+ST+ +  F+G    +WS+K+QP V+ S+ E
Sbjct: 181 TSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTE 210

[Close]

BLAST of Cmc10g0273891 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 139.0 bits (349), Expect = 7.0e-32
Identity = 81/251 (32.27%), Postives = 140/251 (55.78%), Query Frame = 0


Query: 2    WNNIINKYFLDNGYLRCPYEHSLYIKVNGH-GDILVVCLYVDDLIF-TGNCTSMFKDLKN 61
            W  +  +   +  ++    +  +YI   G+  + + V LYVDD++  TG+ T M  + K 
Sbjct: 1048 WFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRM-NNFKR 1107

Query: 62   TMTQEFEMTDIGLMSYYLSIEVKQSEEGIFISQERYTREILEKFNMMNSKSVATPIETGT 121
             + ++F MTD+  + +++ I ++  E+ I++SQ  Y ++IL KFNM N  +V+TP+ +  
Sbjct: 1108 YLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKI 1167

Query: 122  KLSKHEEGDDVELSYFKSLVRSLRY-LTCTQPDILFRVGLVSLFMESPTTTHWKVAKRIL 181
                    +D   +  +SL+  L Y + CT+PD+   V ++S +     +  W+  KR+L
Sbjct: 1168 NYELLNSDEDCN-TPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVL 1227

Query: 182  RYLRGTLDYGLFYSSSKEF--KLEGYCDSDWAGDTDDRKSTSQYVFFVGN-TAFTWSSKK 241
            RYL+GT+D  L +  +  F  K+ GY DSDWAG   DRKST+ Y+F + +     W++K+
Sbjct: 1228 RYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKR 1287

Query: 242  QPIVTLSTCEA 247
            Q  V  S+ EA
Sbjct: 1288 QNSVAASSTEA 1296

[Close]

BLAST of Cmc10g0273891 vs. ExPASy TrEMBL
Match: A0A5A7V8Y7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G005190 PE=4 SV=1)

HSP 1 Score: 467.6 bits (1202), Expect = 3.2e-128
Identity = 229/246 (93.09%), Postives = 235/246 (95.53%), Query Frame = 0


Query: 1    MWNNIINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCTSMFKDLKNT 60
            MWN+ INKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNC SMF+DLKN 
Sbjct: 936  MWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKNA 995

Query: 61   MTQEFEMTDIGLMSYYLSIEVKQSEEGIFISQERYTREILEKFNMMNSKSVATPIETGTK 120
            MTQEFEMTDIGLMSYYL IEVKQSEEGIFISQERYTREILEKFNMMNSK VATPIETGTK
Sbjct: 996  MTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVATPIETGTK 1055

Query: 121  LSKHEEGDDVELSYFKSLVRSLRYLTCTQPDILFRVGLVSLFMESPTTTHWKVAKRILRY 180
            LSKHEEGDDV+ SYFKSLV SLRYLTCT+PDILF VGLVS FMESPTTTH KVAKRILRY
Sbjct: 1056 LSKHEEGDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSRFMESPTTTHLKVAKRILRY 1115

Query: 181  LRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTDDRKSTSQYVFFVGNTAFTWSSKKQPIVT 240
            LRGTLDYGLFYSSSKEFKLEGYCDSDWAGDT+DRKSTS YVFF+GNTAFTWSSKKQPIVT
Sbjct: 1116 LRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVT 1175

Query: 241  LSTCEA 247
            LSTCEA
Sbjct: 1176 LSTCEA 1181

[Close]

BLAST of Cmc10g0273891 vs. ExPASy TrEMBL
Match: A0A5A7SRM0 (Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold269G002060 PE=4 SV=1)

HSP 1 Score: 466.1 bits (1198), Expect = 9.2e-128
Identity = 228/246 (92.68%), Postives = 235/246 (95.53%), Query Frame = 0


Query: 1    MWNNIINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCTSMFKDLKNT 60
            MWN+ INKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNC SMF+DLK  
Sbjct: 811  MWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKKA 870

Query: 61   MTQEFEMTDIGLMSYYLSIEVKQSEEGIFISQERYTREILEKFNMMNSKSVATPIETGTK 120
            MTQEFEMTDIGLMSYYL IEVKQSEEGIFISQERYTR+ILEKFNMMNSKSVATPIETGTK
Sbjct: 871  MTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTRDILEKFNMMNSKSVATPIETGTK 930

Query: 121  LSKHEEGDDVELSYFKSLVRSLRYLTCTQPDILFRVGLVSLFMESPTTTHWKVAKRILRY 180
            LSKHEEGDDV+ SYFKSLV SLRYLTCT+PDILF VGLVS FMESPTTTH KVAKRILRY
Sbjct: 931  LSKHEEGDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSRFMESPTTTHLKVAKRILRY 990

Query: 181  LRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTDDRKSTSQYVFFVGNTAFTWSSKKQPIVT 240
            LRGTLDYGLFYSSSKEFKLEGYCDSDWAGDT+DRKSTS YVFF+GNTAFTWSSKKQPIVT
Sbjct: 991  LRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVT 1050

Query: 241  LSTCEA 247
            LSTCEA
Sbjct: 1051 LSTCEA 1056

[Close]

BLAST of Cmc10g0273891 vs. ExPASy TrEMBL
Match: A0A5D3CQU3 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G001240 PE=4 SV=1)

HSP 1 Score: 466.1 bits (1198), Expect = 9.2e-128
Identity = 228/246 (92.68%), Postives = 235/246 (95.53%), Query Frame = 0


Query: 1    MWNNIINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCTSMFKDLKNT 60
            MWN+ INKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNC SMF+DLK  
Sbjct: 981  MWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKKA 1040

Query: 61   MTQEFEMTDIGLMSYYLSIEVKQSEEGIFISQERYTREILEKFNMMNSKSVATPIETGTK 120
            MTQEFEMTDIGLMSYYL IEVKQSEEGIFISQERYTR+ILEKFNMMNSKSVATPIETGTK
Sbjct: 1041 MTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTRDILEKFNMMNSKSVATPIETGTK 1100

Query: 121  LSKHEEGDDVELSYFKSLVRSLRYLTCTQPDILFRVGLVSLFMESPTTTHWKVAKRILRY 180
            LSKHEEGDDV+ SYFKSLV SLRYLTCT+PDILF VGLVS FMESPTTTH KVAKRILRY
Sbjct: 1101 LSKHEEGDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSRFMESPTTTHLKVAKRILRY 1160

Query: 181  LRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTDDRKSTSQYVFFVGNTAFTWSSKKQPIVT 240
            LRGTLDYGLFYSSSKEFKLEGYCDSDWAGDT+DRKSTS YVFF+GNTAFTWSSKKQPIVT
Sbjct: 1161 LRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVT 1220

Query: 241  LSTCEA 247
            LSTCEA
Sbjct: 1221 LSTCEA 1226

[Close]

BLAST of Cmc10g0273891 vs. ExPASy TrEMBL
Match: A0A5A7V3X9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G003030 PE=4 SV=1)

HSP 1 Score: 465.3 bits (1196), Expect = 1.6e-127
Identity = 228/246 (92.68%), Postives = 234/246 (95.12%), Query Frame = 0


Query: 1    MWNNIINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCTSMFKDLKNT 60
            MWN+ INKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNC SMF+DLK  
Sbjct: 981  MWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKKA 1040

Query: 61   MTQEFEMTDIGLMSYYLSIEVKQSEEGIFISQERYTREILEKFNMMNSKSVATPIETGTK 120
            MTQEFEMTDIGLMSYYL IEVKQSEEGIFISQERYTREILEKFNMMNSK VATPIETGTK
Sbjct: 1041 MTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVATPIETGTK 1100

Query: 121  LSKHEEGDDVELSYFKSLVRSLRYLTCTQPDILFRVGLVSLFMESPTTTHWKVAKRILRY 180
            LSKHEEGDDV+ SYFKSLV SLRYLTCT+PDILF VGLVS FMESPTTTH KVAKRILRY
Sbjct: 1101 LSKHEEGDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSRFMESPTTTHLKVAKRILRY 1160

Query: 181  LRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTDDRKSTSQYVFFVGNTAFTWSSKKQPIVT 240
            LRGTLDYGLFYSSSKEFKLEGYCDSDWAGDT+DRKSTS YVFF+GNTAFTWSSKKQPIVT
Sbjct: 1161 LRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVT 1220

Query: 241  LSTCEA 247
            LSTCEA
Sbjct: 1221 LSTCEA 1226

[Close]

BLAST of Cmc10g0273891 vs. ExPASy TrEMBL
Match: A0A5A7SJX6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G002010 PE=4 SV=1)

HSP 1 Score: 465.3 bits (1196), Expect = 1.6e-127
Identity = 228/246 (92.68%), Postives = 234/246 (95.12%), Query Frame = 0


Query: 1    MWNNIINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCTSMFKDLKNT 60
            MWN+ INKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNC SMF+DLK  
Sbjct: 981  MWNSRINKYFLDNGYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKKA 1040

Query: 61   MTQEFEMTDIGLMSYYLSIEVKQSEEGIFISQERYTREILEKFNMMNSKSVATPIETGTK 120
            MTQEFEMTDIGLMSYYL IEVKQSEEGIFISQERYTREILEKFNMMNSK VATPIETGTK
Sbjct: 1041 MTQEFEMTDIGLMSYYLGIEVKQSEEGIFISQERYTREILEKFNMMNSKPVATPIETGTK 1100

Query: 121  LSKHEEGDDVELSYFKSLVRSLRYLTCTQPDILFRVGLVSLFMESPTTTHWKVAKRILRY 180
            LSKHEEGDDV+ SYFKSLV SLRYLTCT+PDILF VGLVS FMESPTTTH KVAKRILRY
Sbjct: 1101 LSKHEEGDDVDPSYFKSLVGSLRYLTCTRPDILFSVGLVSRFMESPTTTHLKVAKRILRY 1160

Query: 181  LRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTDDRKSTSQYVFFVGNTAFTWSSKKQPIVT 240
            LRGTLDYGLFYSSSKEFKLEGYCDSDWAGDT+DRKSTS YVFF+GNTAFTWSSKKQPIVT
Sbjct: 1161 LRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVT 1220

Query: 241  LSTCEA 247
            LSTCEA
Sbjct: 1221 LSTCEA 1226

[Close]

BLAST of Cmc10g0273891 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 154.8 bits (390), Expect = 8.7e-38
Identity = 75/215 (34.88%), Postives = 131/215 (60.93%), Query Frame = 0


Query: 35  LVVCLYVDDLIFTGNCTSMFKDLKNTMTQEFEMTDIGLMSYYLSIEVKQSEEGIFISQER 94
           + + LYVDD++ TG+  ++   L   ++  F M D+G + Y+L I++K    G+F+SQ +
Sbjct: 1   MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTK 60

Query: 95  YTREILEKFNMMNSKSVATP----IETGTKLSKHEEGDDVELSYFKSLVRSLRYLTCTQP 154
           Y  +IL    M++ K ++TP    + +    +K+ +  D     F+S+V +L+YLT T+P
Sbjct: 61  YAEQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSD-----FRSIVGALQYLTLTRP 120

Query: 155 DILFRVGLVSLFMESPTTTHWKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGD 214
           DI + V +V   M  PT   + + KR+LRY++GT+ +GL+   + +  ++ +CDSDWAG 
Sbjct: 121 DISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGC 180

Query: 215 TDDRKSTSQYVFFVGNTAFTWSSKKQPIVTLSTCE 246
           T  R+ST+ +  F+G    +WS+K+QP V+ S+ E
Sbjct: 181 TSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTE 210

[Close]

BLAST of Cmc10g0273891 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 154.1 bits (388), Expect = 1.5e-37
Identity = 77/233 (33.05%), Postives = 134/233 (57.51%), Query Frame = 0


Query: 14  GYLRCPYEHSLYIKVNGHGDILVVCLYVDDLIFTGNCTSMFKDLKNTMTQEFEMTDIGLM 73
           G+++   +H+ ++K+      L V +YVDD+I   N  +   +LK+ +   F++ D+G +
Sbjct: 258 GFVQSHSDHTYFLKITA-TLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPL 317

Query: 74  SYYLSIEVKQSEEGIFISQERYTREILEKFNMMNSKSVATPIETGTKLSKHEEGDDVELS 133
            Y+L +E+ +S  GI I Q +Y  ++L++  ++  K  + P++     S H  GD V+  
Sbjct: 318 KYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAK 377

Query: 134 YFKSLVRSLRYLTCTQPDILFRVGLVSLFMESPTTTHWKVAKRILRYLRGTLDYGLFYSS 193
            ++ L+  L YL  T+ DI F V  +S F E+P   H +   +IL Y++GT+  GLFYSS
Sbjct: 378 AYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSS 437

Query: 194 SKEFKLEGYCDSDWAGDTDDRKSTSQYVFFVGNTAFTWSSKKQPIVTLSTCEA 247
             E +L+ + D+ +    D R+ST+ Y  F+G +  +W SKKQ +V+ S+ EA
Sbjct: 438 QAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEA 489

[Close]

BLAST of Cmc10g0273891 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 68.9 bits (167), Expect = 6.3e-12
Identity = 30/81 (37.04%), Postives = 49/81 (60.49%), Query Frame = 0


Query: 144 YLTCTQPDILFRVGLVSLFMESPTTTHWKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYC 203
           YLT T+PD+ F V  +S F  +  T   +   ++L Y++GT+  GLFYS++ + +L+ + 
Sbjct: 2   YLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFA 61

Query: 204 DSDWAGDTDDRKSTSQYVFFV 225
           DSDWA   D R+S + +   V
Sbjct: 62  DSDWASCPDTRRSVTGFCSLV 82

The following BLAST results are available for this feature:

BLAST of Cmc10g0273891 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062149.1	6.5e-128	93.09	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK13925.1	1.9e-127	92.68	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0033083.1	1.9e-127	92.68	copia protein [Cucumis melo var. makuwa]	[more]
TYK18362.1	3.2e-127	92.68	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0047979.1	3.2e-127	92.68	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of Cmc10g0273891 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZT94	1.1e-45	37.96	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	4.8e-41	36.33	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P10978	4.5e-39	36.86	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P92519	1.2e-36	34.88	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]
P04146	7.0e-32	32.27	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of Cmc10g0273891 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V8Y7	3.2e-128	93.09	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7SRM0	9.2e-128	92.68	Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold269G002060...	[more]
A0A5D3CQU3	9.2e-128	92.68	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7V3X9	1.6e-127	92.68	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7SJX6	1.6e-127	92.68	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Cmc10g0273891 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00810.1	8.7e-38	34.88	DNA/RNA polymerases superfamily protein	[more]
AT4G23160.1	1.5e-37	33.05	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00240.1	6.3e-12	37.04	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 1..115 e-value: 5.4E-27 score: 94.9
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 107..224
None	No IPR available	PANTHER	PTHR11439:SF308	SUBFAMILY NOT NAMED	coord: 107..224
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 200..246 e-value: 1.70767E-25 score: 95.6129
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 35..240

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc10g0273891.1	Cmc10g0273891.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding