Cmc10g0270071 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc10g0270071
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	60S ribosomal protein L17
Location	CMiso1.1chr10: 4379926 .. 4381340 (-)
RNA-Seq Expression	Cmc10g0270071
Synteny	Cmc10g0270071

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAACATTCCAATCTTAAGACTGTGAAAGTATTTTATTATAAAAGATTCATTCTGTCTCTTGTGTATGTATTGATTTACAAATGTCGCCAAAATATTCTTTTTAAGGCATGGCTCTGTCATAGTGTTCAATCATAAAATTCCTGTTGTCCTTGTGTTTGAATTTTTTAACAGCTTTAATGAGCTTGAATAAATGGATCCGTATTTCATTCCTGTGCAGTATTGTTTACTGTATCCACTATGTGTTTATGTTTGTAGAATACACGTGAGACTGCTCATGCCCTAAGAAAGTTGCCCTTGGCCAAAGCAAAGAGATACTTAGAGGACGTTCTTGCCCACAAGCAGGCTATACCATTCCGACGTTTTTGTGGAGGTGTTGGACGAACTGCTCAGGCCAAAAATAGGCATTCAAATGGACAAGGACGCTGGCCTGTTAAATCTGCGAAATTTATTCTAGATCTTCTTAAGAATGCTGAGAGTAATGCCGAAGTACGTATTACTCACACATCCTGGTTGCCTTTCTGTTCTTTTATAAGTTCTACTTAATTCTAACATGGCTATGCCTCCTCCTTCAGGTGAAAGGACTGGATGTTGATTCCCTCATCGTATCCCACATTCAGGTGAACCAAGCTCAAAAGCAAAGGCGTCGTACATACCGTGCTCACGGAAGAATTAACCGTATGTGCTTCCCGTGATTTCAAATATAAAACCTTATCATTTCTGATTAGATCATTACATACAATATGGAATTTGATAATTTTGTTTTGCAGCCTACATGTCGTCTCCATGCCACATCGAGCTTATTTTGTCAGAAAAGGAAGAACCTGTCAAGAAAGAGGTAAACTCTAGACTTCAGAATTCAATGGGATCTATGTTGTGTGTTTTGTTTAGGGCTTCTTCTTGAATTCTCATTTTTTTCTGGTGACAGCCTGAGACCCAATTGGCAACGAGTAAATCCAAGAAATCGCAAGCCCTCCGCAGTGGTGCTTCGTCTTGATCTATATTATTGCTGCACTAAGTGTTCTTTTTTTCCTTTTAAAAAAACAGAGGTTCGTTTCTTTGATCATTATAGAATCCTGCTCAGAATCCATTGCCCCCAACTTTGTAGTTTACGAAATCTCGTCGATCATGTTTTATTTATTAGGAATCATCTCCCAAATTTTGGATTTCCGTTTCTTTTAAGCAGAGTTTATACATCGAGACTTTCTTTCACTCTCCCCTCTGTTGGTTCACGTTTGCTTTAGGTAATTGTTGTTCAAAACGTGATGATGATTTTATTGTCATAATTTCTTTTGTATTTGAAAGAGTACTGTCATCATTTTCAACAGTTCATAGTAGAATTGTAAATTTAGTTTGGTTCGGTTTCTGCTTTGATTGGGCCAAAGGTAATTTGCAGATATAAAATGAGTAGACC

mRNA sequence

ATGAATACACGTGAGACTGCTCATGCCCTAAGAAAGTTGCCCTTGGCCAAAGCAAAGAGATACTTAGAGGACGTTCTTGCCCACAAGCAGGCTATACCATTCCGACGTTTTTGTGGAGGTGTTGGACGAACTGCTCAGGCCAAAAATAGGCATTCAAATGGACAAGGACGCTGGCCTGTTAAATCTGCGAAATTTATTCTAGATCTTCTTAAGAATGCTGAGAGTAATGCCGAAGTGAAAGGACTGGATGTTGATTCCCTCATCGTATCCCACATTCAGGTGAACCAAGCTCAAAAGCAAAGGCGTCGTACATACCGTGCTCACGGAAGAATTAACCCCTACATGTCGTCTCCATGCCACATCGAGCTTATTTTGTCAGAAAAGGAAGAACCTGTCAAGAAAGAGCCTGAGACCCAATTGGCAACGAGTAAATCCAAGAAATCGCAAGCCCTCCGCAGTGGTGCTTCGTCTTGATCTATATTATTGCTGCACTAAGTGTTCTTTTTTTCCTTTTAAAAAAACAGAGGTTCGTTTCTTTGATCATTATAGAATCCTGCTCAGAATCCATTGCCCCCAACTTTGTAGTTTACGAAATCTCGTCGATCATGTTTTATTTATTAGGAATCATCTCCCAAATTTTGGATTTCCGTTTCTTTTAAGCAGAGTTTATACATCGAGACTTTCTTTCACTCTCCCCTCTGTTGGTTCACGTTTGCTTTAGGTAATTGTTGTTCAAAACGTGATGATGATTTTATTGTCATAATTTCTTTTGTATTTGAAAGAGTACTGTCATCATTTTCAACAGTTCATAGTAGAATTGTAAATTTAGTTTGGTTCGGTTTCTGCTTTGATTGGGCCAAAGGTAATTTGCAGATATAAAATGAGTAGACC

Coding sequence (CDS)

ATGAATACACGTGAGACTGCTCATGCCCTAAGAAAGTTGCCCTTGGCCAAAGCAAAGAGATACTTAGAGGACGTTCTTGCCCACAAGCAGGCTATACCATTCCGACGTTTTTGTGGAGGTGTTGGACGAACTGCTCAGGCCAAAAATAGGCATTCAAATGGACAAGGACGCTGGCCTGTTAAATCTGCGAAATTTATTCTAGATCTTCTTAAGAATGCTGAGAGTAATGCCGAAGTGAAAGGACTGGATGTTGATTCCCTCATCGTATCCCACATTCAGGTGAACCAAGCTCAAAAGCAAAGGCGTCGTACATACCGTGCTCACGGAAGAATTAACCCCTACATGTCGTCTCCATGCCACATCGAGCTTATTTTGTCAGAAAAGGAAGAACCTGTCAAGAAAGAGCCTGAGACCCAATTGGCAACGAGTAAATCCAAGAAATCGCAAGCCCTCCGCAGTGGTGCTTCGTCTTGA

Protein sequence

MNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSQALRSGASS

Homology

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BLAST of Cmc10g0270071 vs. NCBI nr
Match: XP_008446047.1 (PREDICTED: 60S ribosomal protein L17-2 [Cucumis melo] >XP_011655562.1 60S ribosomal protein L17-2 [Cucumis sativus] >KAA0034200.1 60S ribosomal protein L17-2 [Cucumis melo var. makuwa] >KGN51678.1 hypothetical protein Csa_007731 [Cucumis sativus] >TYK15720.1 60S ribosomal protein L17-2 [Cucumis melo var. makuwa])

HSP 1 Score: 303.1 bits (775), Expect = 1.4e-78
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 2   NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 61
           NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK
Sbjct: 28  NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 87

Query: 62  SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 121
           SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI
Sbjct: 88  SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 147

Query: 122 ELILSEKEEPVKKEPETQLATSKSKKSQALRSGASS 158
           ELILSEKEEPVKKEPETQLATSKSKKSQALRSGASS
Sbjct: 148 ELILSEKEEPVKKEPETQLATSKSKKSQALRSGASS 183

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BLAST of Cmc10g0270071 vs. NCBI nr
Match: XP_022945920.1 (60S ribosomal protein L17-2 [Cucurbita moschata] >XP_022966986.1 60S ribosomal protein L17-2-like [Cucurbita maxima] >XP_023541703.1 60S ribosomal protein L17-2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 301.6 bits (771), Expect = 4.0e-78
Identity = 155/156 (99.36%), Postives = 155/156 (99.36%), Query Frame = 0


Query: 2   NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 61
           NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK
Sbjct: 28  NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 87

Query: 62  SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 121
           SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI
Sbjct: 88  SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 147

Query: 122 ELILSEKEEPVKKEPETQLATSKSKKSQALRSGASS 158
           ELILSEKEEPVKKEPETQLATSKSKK QALRSGASS
Sbjct: 148 ELILSEKEEPVKKEPETQLATSKSKKGQALRSGASS 183

[Close]

BLAST of Cmc10g0270071 vs. NCBI nr
Match: XP_022956721.1 (60S ribosomal protein L17-2-like [Cucurbita moschata] >XP_023549829.1 60S ribosomal protein L17-2-like [Cucurbita pepo subsp. pepo] >KAG6601595.1 60S ribosomal protein L17-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 300.1 bits (767), Expect = 1.2e-77
Identity = 153/156 (98.08%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 2   NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 61
           NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK
Sbjct: 28  NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 87

Query: 62  SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 121
           SAKFILDLL+NAESNAEVKGLDVDSLI+SHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI
Sbjct: 88  SAKFILDLLRNAESNAEVKGLDVDSLIISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 147

Query: 122 ELILSEKEEPVKKEPETQLATSKSKKSQALRSGASS 158
           ELILSEK+EPVKKEPETQLATSKSKKSQALRSGASS
Sbjct: 148 ELILSEKKEPVKKEPETQLATSKSKKSQALRSGASS 183

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BLAST of Cmc10g0270071 vs. NCBI nr
Match: XP_038891549.1 (60S ribosomal protein L17-2 [Benincasa hispida])

HSP 1 Score: 299.7 bits (766), Expect = 1.5e-77
Identity = 154/156 (98.72%), Postives = 155/156 (99.36%), Query Frame = 0


Query: 2   NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 61
           NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK
Sbjct: 28  NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 87

Query: 62  SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 121
           SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI
Sbjct: 88  SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 147

Query: 122 ELILSEKEEPVKKEPETQLATSKSKKSQALRSGASS 158
           ELILSEKEEPVKKEPE QLATSK+KKSQALRSGASS
Sbjct: 148 ELILSEKEEPVKKEPEIQLATSKAKKSQALRSGASS 183

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BLAST of Cmc10g0270071 vs. NCBI nr
Match: XP_022998692.1 (60S ribosomal protein L17-2 [Cucurbita maxima])

HSP 1 Score: 298.5 bits (763), Expect = 3.4e-77
Identity = 152/156 (97.44%), Postives = 155/156 (99.36%), Query Frame = 0


Query: 2   NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 61
           NTRETAHALRKLPL KAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK
Sbjct: 28  NTRETAHALRKLPLVKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 87

Query: 62  SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 121
           SAKFILDLL+NAESNAEVKGLDVDSLI+SHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI
Sbjct: 88  SAKFILDLLRNAESNAEVKGLDVDSLIISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 147

Query: 122 ELILSEKEEPVKKEPETQLATSKSKKSQALRSGASS 158
           ELILSEK+EPVKKEPETQLATSKSKKSQALRSGASS
Sbjct: 148 ELILSEKKEPVKKEPETQLATSKSKKSQALRSGASS 183

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BLAST of Cmc10g0270071 vs. ExPASy Swiss-Prot
Match: P51413 (60S ribosomal protein L17-2 OS=Arabidopsis thaliana OX=3702 GN=RPL17B PE=2 SV=2)

HSP 1 Score: 264.2 bits (674), Expect = 9.2e-70
Identity = 133/149 (89.26%), Postives = 141/149 (94.63%), Query Frame = 0


Query: 2   NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 61
           NTRETAHA+RKLPL KAKRYLEDV+AHKQAIPF RFC GVGRTAQAKNRHSNGQGRWP K
Sbjct: 28  NTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAK 87

Query: 62  SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 121
           SA+F+LDLLKNAESNAEVKGLDVD+L +SHIQVNQA KQRRRTYRAHGRINPYMS+PCHI
Sbjct: 88  SAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHI 147

Query: 122 ELILSEKEEPVKKEPETQLATSKSKKSQA 151
           ELILSEKEEPVKKEPETQLA +KSKKS A
Sbjct: 148 ELILSEKEEPVKKEPETQLA-AKSKKSAA 175

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BLAST of Cmc10g0270071 vs. ExPASy Swiss-Prot
Match: Q93VI3 (60S ribosomal protein L17-1 OS=Arabidopsis thaliana OX=3702 GN=RPL17A PE=2 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 7.8e-69
Identity = 135/156 (86.54%), Postives = 143/156 (91.67%), Query Frame = 0


Query: 2   NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 61
           NTRETAHA+RKLPL KAKRYLEDV+AHKQAIPF RFC GVGRTAQAKNRHSNGQGRWP K
Sbjct: 28  NTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAK 87

Query: 62  SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 121
           SA+F+LDLLKNAESNAEVKGLDVD+L +SHIQVNQA KQRRRTYRAHGRINPYMS+PCHI
Sbjct: 88  SAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHI 147

Query: 122 ELILSEKEEPVKKEPETQLATSKSKKSQALRSGASS 158
           ELILSEKEEPVKKEPETQLA +KSKK      GASS
Sbjct: 148 ELILSEKEEPVKKEPETQLA-AKSKK------GASS 176

[Close]

BLAST of Cmc10g0270071 vs. ExPASy Swiss-Prot
Match: O48557 (60S ribosomal protein L17 OS=Zea mays OX=4577 GN=RPL17 PE=2 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 2.5e-67
Identity = 127/143 (88.81%), Postives = 135/143 (94.41%), Query Frame = 0


Query: 2   NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 61
           NTRETA ALRKLPL KAKRYLEDV+AHKQAIPFRR+CGGVGRTAQAK+RHSNGQGRWPVK
Sbjct: 28  NTRETAFALRKLPLTKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAKSRHSNGQGRWPVK 87

Query: 62  SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 121
           SA+FILDLLKNAESNA+VKGLDVD+L VSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI
Sbjct: 88  SARFILDLLKNAESNADVKGLDVDNLYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 147

Query: 122 ELILSEKEEPVKKEPETQLATSK 145
           ELILSEKEEPVKKE +  +A  K
Sbjct: 148 ELILSEKEEPVKKEADNIVAARK 170

[Close]

BLAST of Cmc10g0270071 vs. ExPASy Swiss-Prot
Match: P35266 (60S ribosomal protein L17-1 OS=Hordeum vulgare OX=4513 PE=2 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 4.0e-65
Identity = 122/140 (87.14%), Postives = 130/140 (92.86%), Query Frame = 0


Query: 2   NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 61
           NTRETA ALRK+PL KAKRYLEDVLAHKQAIPFRR+C GVGRTAQ KNR  NGQGRWP K
Sbjct: 28  NTRETAFALRKMPLNKAKRYLEDVLAHKQAIPFRRYCRGVGRTAQVKNRQPNGQGRWPAK 87

Query: 62  SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 121
           SAKF+LDLLKNAESNAEVKGLDVD+L +SHIQVNQAQKQRRRTYRAHGRINPYMS+PCHI
Sbjct: 88  SAKFVLDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHI 147

Query: 122 ELILSEKEEPVKKEPETQLA 142
           ELILSEKEEPVKKE E+ +A
Sbjct: 148 ELILSEKEEPVKKEAESHIA 167

[Close]

BLAST of Cmc10g0270071 vs. ExPASy Swiss-Prot
Match: P35267 (60S ribosomal protein L17-2 OS=Hordeum vulgare OX=4513 PE=2 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 7.5e-64
Identity = 120/144 (83.33%), Postives = 131/144 (90.97%), Query Frame = 0


Query: 2   NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 61
           NTRETA ALR++PL KAKRYLEDVLAHKQAIPFRR+C GVGRTAQ KNR  NGQGRWP K
Sbjct: 28  NTRETAFALRRMPLGKAKRYLEDVLAHKQAIPFRRYCRGVGRTAQVKNRQPNGQGRWPAK 87

Query: 62  SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 121
           SA+F+LDLLKNAESNAEVKGLDVD+L +SHIQVNQAQKQRRRTYRAHGRINPYMS+PCHI
Sbjct: 88  SAQFVLDLLKNAESNAEVKGLDVDNLYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHI 147

Query: 122 ELILSEKEEPVKKEPETQLATSKS 146
           ELILSEKEEPVKKE +  +A  K+
Sbjct: 148 ELILSEKEEPVKKEADNVVAPRKA 171

[Close]

BLAST of Cmc10g0270071 vs. ExPASy TrEMBL
Match: A0A5A7STA3 (60S ribosomal protein L17-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G002190 PE=3 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 6.6e-79
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 2   NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 61
           NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK
Sbjct: 28  NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 87

Query: 62  SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 121
           SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI
Sbjct: 88  SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 147

Query: 122 ELILSEKEEPVKKEPETQLATSKSKKSQALRSGASS 158
           ELILSEKEEPVKKEPETQLATSKSKKSQALRSGASS
Sbjct: 148 ELILSEKEEPVKKEPETQLATSKSKKSQALRSGASS 183

[Close]

BLAST of Cmc10g0270071 vs. ExPASy TrEMBL
Match: A0A0A0KPZ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G589950 PE=3 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 6.6e-79
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 2   NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 61
           NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK
Sbjct: 28  NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 87

Query: 62  SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 121
           SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI
Sbjct: 88  SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 147

Query: 122 ELILSEKEEPVKKEPETQLATSKSKKSQALRSGASS 158
           ELILSEKEEPVKKEPETQLATSKSKKSQALRSGASS
Sbjct: 148 ELILSEKEEPVKKEPETQLATSKSKKSQALRSGASS 183

[Close]

BLAST of Cmc10g0270071 vs. ExPASy TrEMBL
Match: A0A1S3BDN4 (60S ribosomal protein L17-2 OS=Cucumis melo OX=3656 GN=LOC103488896 PE=3 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 6.6e-79
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 2   NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 61
           NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK
Sbjct: 28  NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 87

Query: 62  SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 121
           SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI
Sbjct: 88  SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 147

Query: 122 ELILSEKEEPVKKEPETQLATSKSKKSQALRSGASS 158
           ELILSEKEEPVKKEPETQLATSKSKKSQALRSGASS
Sbjct: 148 ELILSEKEEPVKKEPETQLATSKSKKSQALRSGASS 183

[Close]

BLAST of Cmc10g0270071 vs. ExPASy TrEMBL
Match: A0A6J1HQT9 (60S ribosomal protein L17-2-like OS=Cucurbita maxima OX=3661 GN=LOC111466530 PE=3 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 1.9e-78
Identity = 155/156 (99.36%), Postives = 155/156 (99.36%), Query Frame = 0


Query: 2   NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 61
           NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK
Sbjct: 28  NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 87

Query: 62  SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 121
           SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI
Sbjct: 88  SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 147

Query: 122 ELILSEKEEPVKKEPETQLATSKSKKSQALRSGASS 158
           ELILSEKEEPVKKEPETQLATSKSKK QALRSGASS
Sbjct: 148 ELILSEKEEPVKKEPETQLATSKSKKGQALRSGASS 183

[Close]

BLAST of Cmc10g0270071 vs. ExPASy TrEMBL
Match: A0A6J1G2C7 (60S ribosomal protein L17-2 OS=Cucurbita moschata OX=3662 GN=LOC111450019 PE=3 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 1.9e-78
Identity = 155/156 (99.36%), Postives = 155/156 (99.36%), Query Frame = 0


Query: 2   NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 61
           NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK
Sbjct: 28  NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 87

Query: 62  SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 121
           SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI
Sbjct: 88  SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 147

Query: 122 ELILSEKEEPVKKEPETQLATSKSKKSQALRSGASS 158
           ELILSEKEEPVKKEPETQLATSKSKK QALRSGASS
Sbjct: 148 ELILSEKEEPVKKEPETQLATSKSKKGQALRSGASS 183

[Close]

BLAST of Cmc10g0270071 vs. TAIR 10
Match: AT1G67430.1 (Ribosomal protein L22p/L17e family protein )

HSP 1 Score: 264.2 bits (674), Expect = 6.5e-71
Identity = 133/149 (89.26%), Postives = 141/149 (94.63%), Query Frame = 0


Query: 2   NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 61
           NTRETAHA+RKLPL KAKRYLEDV+AHKQAIPF RFC GVGRTAQAKNRHSNGQGRWP K
Sbjct: 28  NTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAK 87

Query: 62  SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 121
           SA+F+LDLLKNAESNAEVKGLDVD+L +SHIQVNQA KQRRRTYRAHGRINPYMS+PCHI
Sbjct: 88  SAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHI 147

Query: 122 ELILSEKEEPVKKEPETQLATSKSKKSQA 151
           ELILSEKEEPVKKEPETQLA +KSKKS A
Sbjct: 148 ELILSEKEEPVKKEPETQLA-AKSKKSAA 175

[Close]

BLAST of Cmc10g0270071 vs. TAIR 10
Match: AT1G27400.1 (Ribosomal protein L22p/L17e family protein )

HSP 1 Score: 261.2 bits (666), Expect = 5.5e-70
Identity = 135/156 (86.54%), Postives = 143/156 (91.67%), Query Frame = 0


Query: 2   NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 61
           NTRETAHA+RKLPL KAKRYLEDV+AHKQAIPF RFC GVGRTAQAKNRHSNGQGRWP K
Sbjct: 28  NTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAK 87

Query: 62  SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 121
           SA+F+LDLLKNAESNAEVKGLDVD+L +SHIQVNQA KQRRRTYRAHGRINPYMS+PCHI
Sbjct: 88  SAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHI 147

Query: 122 ELILSEKEEPVKKEPETQLATSKSKKSQALRSGASS 158
           ELILSEKEEPVKKEPETQLA +KSKK      GASS
Sbjct: 148 ELILSEKEEPVKKEPETQLA-AKSKK------GASS 176

[Close]

BLAST of Cmc10g0270071 vs. TAIR 10
Match: AT1G67430.2 (Ribosomal protein L22p/L17e family protein )

HSP 1 Score: 161.0 bits (406), Expect = 7.8e-40
Identity = 94/149 (63.09%), Postives = 99/149 (66.44%), Query Frame = 0


Query: 2   NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVK 61
           NTRETAHA+RKLPL KAKRYLEDV+AHKQAIPF RFC GVGRTAQAKNRHSNGQGRWP K
Sbjct: 28  NTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAK 87

Query: 62  SAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHI 121
           SA+F+LDLLKNAESNA                                            
Sbjct: 88  SAQFVLDLLKNAESNA-------------------------------------------- 131

Query: 122 ELILSEKEEPVKKEPETQLATSKSKKSQA 151
           ELILSEKEEPVKKEPETQLA +KSKKS A
Sbjct: 148 ELILSEKEEPVKKEPETQLA-AKSKKSAA 131

The following BLAST results are available for this feature:

BLAST of Cmc10g0270071 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008446047.1	1.4e-78	100.00	PREDICTED: 60S ribosomal protein L17-2 [Cucumis melo] >XP_011655562.1 60S riboso...	[more]
XP_022945920.1	4.0e-78	99.36	60S ribosomal protein L17-2 [Cucurbita moschata] >XP_022966986.1 60S ribosomal p...	[more]
XP_022956721.1	1.2e-77	98.08	60S ribosomal protein L17-2-like [Cucurbita moschata] >XP_023549829.1 60S riboso...	[more]
XP_038891549.1	1.5e-77	98.72	60S ribosomal protein L17-2 [Benincasa hispida]	[more]
XP_022998692.1	3.4e-77	97.44	60S ribosomal protein L17-2 [Cucurbita maxima]	[more]

BLAST of Cmc10g0270071 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P51413	9.2e-70	89.26	60S ribosomal protein L17-2 OS=Arabidopsis thaliana OX=3702 GN=RPL17B PE=2 SV=2	[more]
Q93VI3	7.8e-69	86.54	60S ribosomal protein L17-1 OS=Arabidopsis thaliana OX=3702 GN=RPL17A PE=2 SV=1	[more]
O48557	2.5e-67	88.81	60S ribosomal protein L17 OS=Zea mays OX=4577 GN=RPL17 PE=2 SV=1	[more]
P35266	4.0e-65	87.14	60S ribosomal protein L17-1 OS=Hordeum vulgare OX=4513 PE=2 SV=1	[more]
P35267	7.5e-64	83.33	60S ribosomal protein L17-2 OS=Hordeum vulgare OX=4513 PE=2 SV=1	[more]

BLAST of Cmc10g0270071 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7STA3	6.6e-79	100.00	60S ribosomal protein L17-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A0A0KPZ4	6.6e-79	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G589950 PE=3 SV=1	[more]
A0A1S3BDN4	6.6e-79	100.00	60S ribosomal protein L17-2 OS=Cucumis melo OX=3656 GN=LOC103488896 PE=3 SV=1	[more]
A0A6J1HQT9	1.9e-78	99.36	60S ribosomal protein L17-2-like OS=Cucurbita maxima OX=3661 GN=LOC111466530 PE=...	[more]
A0A6J1G2C7	1.9e-78	99.36	60S ribosomal protein L17-2 OS=Cucurbita moschata OX=3662 GN=LOC111450019 PE=3 S...	[more]

BLAST of Cmc10g0270071 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67430.1	6.5e-71	89.26	Ribosomal protein L22p/L17e family protein	[more]
AT1G27400.1	5.5e-70	86.54	Ribosomal protein L22p/L17e family protein	[more]
AT1G67430.2	7.8e-40	63.09	Ribosomal protein L22p/L17e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001063	Ribosomal protein L22/L17	PFAM	PF00237	Ribosomal_L22	coord: 2..126 e-value: 1.9E-34 score: 118.0
IPR001063	Ribosomal protein L22/L17	CDD	cd00336	Ribosomal_L22	coord: 2..125 e-value: 2.25094E-30 score: 104.11
IPR036394	Ribosomal protein L22/L17 superfamily	GENE3D	3.90.470.10	Ribosomal protein L22/L17	coord: 1..156 e-value: 2.9E-64 score: 218.1
IPR036394	Ribosomal protein L22/L17 superfamily	SUPERFAMILY	54843	Ribosomal protein L22	coord: 2..128
IPR005721	Ribosomal protein L22/L17, eukaryotic/archaeal	TIGRFAM	TIGR01038	TIGR01038	coord: 2..128 e-value: 1.2E-50 score: 169.3
IPR005721	Ribosomal protein L22/L17, eukaryotic/archaeal	PANTHER	PTHR11593	60S RIBOSOMAL PROTEIN L17	coord: 2..157
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 142..157
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 128..157
None	No IPR available	PANTHER	PTHR11593:SF35	60S RIBOSOMAL PROTEIN L17-2-LIKE	coord: 2..157
IPR018260	Ribosomal protein L22/L17, conserved site	PROSITE	PS00464	RIBOSOMAL_L22	coord: 101..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc10g0270071.1	Cmc10g0270071.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome