Cmc10g0264441 (gene) Melon (Charmono) v1.1

Overview
NameCmc10g0264441
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionUnknown protein
LocationCMiso1.1chr10: 1299305 .. 1300721 (+)
RNA-Seq ExpressionCmc10g0264441
SyntenyCmc10g0264441
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCATTGGTTAGTTTCATATATCAACAGATCAGAGTGAATAATAGAGAGAAAAATGGGAAGAAGAAGAGAAATGGTATTCCTTTTGATTATTCTTTATTCATATATGGTGGCTTCTTCCTTTGCTTTGAAACAACTCTTCACAATAGGTCAATTATTCTCCACTTGATCTCTTCTTCTTCTTCTTCTTTTTCTTCCAACTCTTAAATATAGATATCGTACCCTTTGATTGATTATGTGTTTTTCGATTTAGTTCTTGATCTTTGATTAAAGTTGATTTATATACGCTATTTATATTGATCTATGAATGCTTCGTATTACTCGATATCTAATCATGATAAAAGATAATAAGGAGAAATTTTTTTTTTTTCTTTATTTATTAAATATTAAACAAAAGTTAAGTAGAATTTGGGTACAAATTCAAATGTTATCGAAATATTGTAAAAAAAGACAGGAAAAAAACAATTAGTTTACTTTTATATATTTGTGTTTGATTTGATTAACCATTTGTTTTTATTTAATATTGTTTTCTAACCCTTTCTTAATTTGGGTTTTCATCCTTCTTTTAAGTAAACATGAATTATAATAGTTTTTATTTGAAGTGTATGTTATTTTAATTTGAGTGAAAAAATTAATAAGTTCTTGATATATTTAGTTTAGCAATCCCTTCATAAATATTTTCACGTTATATTGTATCGACAAAAATTTAAACTTATTTAATTATTAGTACATGAACGAAAATGCAACCAAACGAGTGCAAAATACAAAGGAAAAAAGTGATGATGATGTTTTAAGTTCTTAGTTTTTGGTAATTAATCATTTTATTTTTGTTTTATATTCTTTTAAAATCAAACACATAAATATTACTTTAATTAACCATTTTCTTGTTCTACTGCTAACTTCTTAAGAATATATTTTCAAAAAAATAAAAATAAAACAAATGTAGATTTCATAAACATGAAAAAGAAAAAAGAACAGTAACCAAAACCTTCACAACTTGTGATTCATAGAAATATGTATATATTTTGCAGATTCTAAACAACAACTAATTGGGAGATCAAGCTACGACAATATAAGTAGTTTATCGGTTGTTGAACATCGAAGAGGAGGTAGGGGCGTCGTACCAATGTATGCAGCAGCTTCTTCACATCGTCGTGGAAAACACCGCAACTGTGGAAACCGTCATAATAACTACGTCGAGTTTATAGTCGTAGTTGAAGTTTTCGTCTCTATTGCAATTTTGTGTTCACTCATCTAATATCGATTACATTCCAATTCATCAATCAACAACAATAATGTTAAGCATTAATTTTATTTCCCTAGAAAATTTATAGTGTTGTTATATACATACTAATTCATAAGGCTTCTATTCTCTTCATTGTTTACGAAAAAAATCAAAATACAATGTTTAAGATTAATG

mRNA sequence

GCATTGGTTAGTTTCATATATCAACAGATCAGAGTGAATAATAGAGAGAAAAATGGGAAGAAGAAGAGAAATGGTATTCCTTTTGATTATTCTTTATTCATATATGGTGGCTTCTTCCTTTGCTTTGAAACAACTCTTCACAATAGATTCTAAACAACAACTAATTGGGAGATCAAGCTACGACAATATAAGTAGTTTATCGGTTGTTGAACATCGAAGAGGAGGTAGGGGCGTCGTACCAATGTATGCAGCAGCTTCTTCACATCGTCGTGGAAAACACCGCAACTGTGGAAACCGTCATAATAACTACGTCGAGTTTATAGTCGTAGTTGAAGTTTTCGTCTCTATTGCAATTTTGTGTTCACTCATCTAATATCGATTACATTCCAATTCATCAATCAACAACAATAATGTTAAGCATTAATTTTATTTCCCTAGAAAATTTATAGTGTTGTTATATACATACTAATTCATAAGGCTTCTATTCTCTTCATTGTTTACGAAAAAAATCAAAATACAATGTTTAAGATTAATG

Coding sequence (CDS)

ATGGGAAGAAGAAGAGAAATGGTATTCCTTTTGATTATTCTTTATTCATATATGGTGGCTTCTTCCTTTGCTTTGAAACAACTCTTCACAATAGATTCTAAACAACAACTAATTGGGAGATCAAGCTACGACAATATAAGTAGTTTATCGGTTGTTGAACATCGAAGAGGAGGTAGGGGCGTCGTACCAATGTATGCAGCAGCTTCTTCACATCGTCGTGGAAAACACCGCAACTGTGGAAACCGTCATAATAACTACGTCGAGTTTATAGTCGTAGTTGAAGTTTTCGTCTCTATTGCAATTTTGTGTTCACTCATCTAA

Protein sequence

MGRRREMVFLLIILYSYMVASSFALKQLFTIDSKQQLIGRSSYDNISSLSVVEHRRGGRGVVPMYAAASSHRRGKHRNCGNRHNNYVEFIVVVEVFVSIAILCSLI
Homology
[Close]
BLAST of Cmc10g0264441 vs. NCBI nr
Match: KGN52709.2 (hypothetical protein Csa_008507 [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 4.6e-14
Identity = 61/109 (55.96%), Postives = 75/109 (68.81%), Query Frame = 0 

Query: 1   MGRRR-EMVFLLIILYSYMVASSFALKQLFTIDSKQQLIGRSSYDNISSLSVVEHRRGGR 60
           MGRRR EM F+L+IL S M+A SFA  QLFTIDSKQ +  R      ++   VE R GGR
Sbjct: 1   MGRRRGEMAFILVILCSSMMA-SFAFTQLFTIDSKQHITVREH----NNSRFVERRGGGR 60

Query: 61  GVVPMY-AAASSHRRGKH-RNCGNRHNNYVEFIVVVEVFVSIAILCSLI 107
           GV+P+Y A ASS R GKH  + GNR NNY+EFI ++ V +SIA+LC  I
Sbjct: 61  GVIPIYVAGASSGRHGKHSHSLGNRPNNYIEFI-IIGVSISIALLCRFI 103

[Close]
BLAST of Cmc10g0264441 vs. ExPASy TrEMBL
Match: A0A0A0KTE6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G613615 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 3.4e-10
Identity = 47/88 (53.41%), Postives = 59/88 (67.05%), Query Frame = 0 

Query: 21  SSFALKQLFTIDSKQQLIGRSSYDNISSLSVVEHRRGGRGVVPMY-AAASSHRRGKH-RN 80
           +SFA  QLFTIDSKQ +  R      ++   VE R GGRGV+P+Y A ASS R GKH  +
Sbjct: 3   ASFAFTQLFTIDSKQHITVREH----NNSRFVERRGGGRGVIPIYVAGASSGRHGKHSHS 62

Query: 81  CGNRHNNYVEFIVVVEVFVSIAILCSLI 107
            GNR NNY+EFI ++ V +SIA+LC  I
Sbjct: 63  LGNRPNNYIEFI-IIGVSISIALLCRFI 85

The following BLAST results are available for this feature:
BLAST of Cmc10g0264441 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN52709.24.6e-1455.96hypothetical protein Csa_008507 [Cucumis sativus][more]
BLAST of Cmc10g0264441 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc10g0264441 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KTE63.4e-1053.41Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G613615 PE=4 SV=1[more]
BLAST of Cmc10g0264441 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc10g0264441.1Cmc10g0264441.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0036297 interstrand cross-link repair
cellular_component GO:0005634 nucleus
molecular_function GO:0008409 5'-3' exonuclease activity
molecular_function GO:0017108 5'-flap endonuclease activity
molecular_function GO:0070336 flap-structured DNA binding