Cmc09g0249441 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc09g0249441
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr09: 15349518 .. 15349853 (+)
RNA-Seq Expression	Cmc09g0249441
Synteny	Cmc09g0249441

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTCACTACAACTATTTTACATGGAAGCCTAAAAGAAGACTTATATATGGAACAACCTAAAGGTTTTGAAGCTAAAGGAAAAATAGACCTAGTTTGCAAACTAAAGAAATCCTTATATGGATTGAAGCAGTCACCAAGGTGTTGGTATAAAAGGTTTAACGATTTCATCAACAAAATAGGCTTTATGAGAAGTTTATATGATCCTTATGTCTACTATAAGAAGCTAACTGATGGAAGCCTAATCTATTTACTGTTATATGTTAATGATATGCTATTGGTTGGTAAAAATCTTACTAAGCTAAATAAGATAAAAAGAACAGTTGAAGAATGA

mRNA sequence

ATGGATGTCACTACAACTATTTTACATGGAAGCCTAAAAGAAGACTTATATATGGAACAACCTAAAGGTTTTGAAGCTAAAGGAAAAATAGACCTAGTTTGCAAACTAAAGAAATCCTTATATGGATTGAAGCAGTCACCAAGGTGTTGGTATAAAAGGTTTAACGATTTCATCAACAAAATAGGCTTTATGAGAAGTTTATATGATCCTTATGTCTACTATAAGAAGCTAACTGATGGAAGCCTAATCTATTTACTGTTATATGTTAATGATATGCTATTGGTTGGTAAAAATCTTACTAAGCTAAATAAGATAAAAAGAACAGTTGAAGAATGA

Coding sequence (CDS)

ATGGATGTCACTACAACTATTTTACATGGAAGCCTAAAAGAAGACTTATATATGGAACAACCTAAAGGTTTTGAAGCTAAAGGAAAAATAGACCTAGTTTGCAAACTAAAGAAATCCTTATATGGATTGAAGCAGTCACCAAGGTGTTGGTATAAAAGGTTTAACGATTTCATCAACAAAATAGGCTTTATGAGAAGTTTATATGATCCTTATGTCTACTATAAGAAGCTAACTGATGGAAGCCTAATCTATTTACTGTTATATGTTAATGATATGCTATTGGTTGGTAAAAATCTTACTAAGCTAAATAAGATAAAAAGAACAGTTGAAGAATGA

Protein sequence

MDVTTTILHGSLKEDLYMEQPKGFEAKGKIDLVCKLKKSLYGLKQSPRCWYKRFNDFINKIGFMRSLYDPYVYYKKLTDGSLIYLLLYVNDMLLVGKNLTKLNKIKRTVEE

Homology

[Close]

BLAST of Cmc09g0249441 vs. NCBI nr
Match: KAA0047818.1 (retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 196.4 bits (498), Expect = 1.3e-46
Identity = 95/110 (86.36%), Postives = 102/110 (92.73%), Query Frame = 0


Query: 1   MDVTTTILHGSLKEDLYMEQPKGFEAKGKIDLVCKLKKSLYGLKQSPRCWYKRFNDFINK 60
           MDVT   LHGSL+EDLYMEQPKGFEAKGKIDLVCKLKKSLYGLKQSPRCW KRF+DFINK
Sbjct: 204 MDVTIAFLHGSLEEDLYMEQPKGFEAKGKIDLVCKLKKSLYGLKQSPRCWNKRFDDFINK 263

Query: 61  IGFMRSLYDPYVYYKKLTDGSLIYLLLYVNDMLLVGKNLTKLNKIKRTVE 111
           IGFMRSLYDP VYYKKLT+GSLIYLLLYV+DMLL GKNLTKLN+IK  ++
Sbjct: 264 IGFMRSLYDPCVYYKKLTNGSLIYLLLYVDDMLLAGKNLTKLNEIKEQLK 313

[Close]

BLAST of Cmc09g0249441 vs. NCBI nr
Match: TYK02789.1 (retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 193.7 bits (491), Expect = 8.2e-46
Identity = 94/106 (88.68%), Postives = 99/106 (93.40%), Query Frame = 0


Query: 1   MDVTTTILHGSLKEDLYMEQPKGFEAKGKIDLVCKLKKSLYGLKQSPRCWYKRFNDFINK 60
           MDVTTT LHGSL+EDLYMEQ KGFEAKGK DLVCKLKKSLYGLKQSPRCWYKRF+ FINK
Sbjct: 206 MDVTTTFLHGSLEEDLYMEQHKGFEAKGKTDLVCKLKKSLYGLKQSPRCWYKRFDVFINK 265

Query: 61  IGFMRSLYDPYVYYKKLTDGSLIYLLLYVNDMLLVGKNLTKLNKIK 107
           IGFMRSLYDP VYYKKLTDGSLIYLLLYV++MLL GKN TKLN+IK
Sbjct: 266 IGFMRSLYDPLVYYKKLTDGSLIYLLLYVDNMLLAGKNFTKLNEIK 311

[Close]

BLAST of Cmc09g0249441 vs. NCBI nr
Match: KAA0046197.1 (retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK14164.1 retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 190.7 bits (483), Expect = 7.0e-45
Identity = 92/110 (83.64%), Postives = 101/110 (91.82%), Query Frame = 0


Query: 1   MDVTTTILHGSLKEDLYMEQPKGFEAKGKIDLVCKLKKSLYGLKQSPRCWYKRFNDFINK 60
           MDVTTT LHGSL+ DLYMEQPKG +AKGK DLVCKLKKSLYGLKQSPR WYKRF+DFINK
Sbjct: 1   MDVTTTFLHGSLEADLYMEQPKGSKAKGKTDLVCKLKKSLYGLKQSPRFWYKRFDDFINK 60

Query: 61  IGFMRSLYDPYVYYKKLTDGSLIYLLLYVNDMLLVGKNLTKLNKIKRTVE 111
           IGFMRSLYDP VYYKKLTDGSL+YLLLYV+DMLL GKNLTKLN+I+  ++
Sbjct: 61  IGFMRSLYDPCVYYKKLTDGSLMYLLLYVDDMLLAGKNLTKLNEIREQLK 110

[Close]

BLAST of Cmc09g0249441 vs. NCBI nr
Match: XP_008448404.1 (PREDICTED: retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo] >TYK14616.1 retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 190.7 bits (483), Expect = 7.0e-45
Identity = 93/110 (84.55%), Postives = 100/110 (90.91%), Query Frame = 0


Query: 1   MDVTTTILHGSLKEDLYMEQPKGFEAKGKIDLVCKLKKSLYGLKQSPRCWYKRFNDFINK 60
           MDVT   LHGSL+EDLYMEQPKGFEAKGKIDLVCKLKKSLYGLKQSPRCW KRF+DFINK
Sbjct: 1   MDVTIAFLHGSLEEDLYMEQPKGFEAKGKIDLVCKLKKSLYGLKQSPRCWNKRFDDFINK 60

Query: 61  IGFMRSLYDPYVYYKKLTDGSLIYLLLYVNDMLLVGKNLTKLNKIKRTVE 111
           IGFM SLYDP V YKKLT+GSLIYLLLYV+DMLL GKNLTKLN+IK  ++
Sbjct: 61  IGFMSSLYDPCVCYKKLTNGSLIYLLLYVDDMLLAGKNLTKLNEIKEQLK 110

[Close]

BLAST of Cmc09g0249441 vs. NCBI nr
Match: CAJ65856.1 (putative reverse transcriptase, partial [Cucumis melo])

HSP 1 Score: 151.4 bits (381), Expect = 4.7e-33
Identity = 72/77 (93.51%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 11 SLKEDLYMEQPKGFEAKGKIDLVCKLKKSLYGLKQSPRCWYKRFNDFINKIGFMRSLYDP 70
          SL+EDLYMEQPKGFEAKGKIDLVCKLKKSLYGLKQSPRCW KRF+DFINKIGFMRSLYDP
Sbjct: 1  SLEEDLYMEQPKGFEAKGKIDLVCKLKKSLYGLKQSPRCWNKRFDDFINKIGFMRSLYDP 60

Query: 71 YVYYKKLTDGSLIYLLL 88
           VYYKKLT+GSLIYLLL
Sbjct: 61 CVYYKKLTNGSLIYLLL 77

[Close]

BLAST of Cmc09g0249441 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.3e-27
Identity = 55/106 (51.89%), Postives = 79/106 (74.53%), Query Frame = 0


Query: 1    MDVTTTILHGSLKEDLYMEQPKGFEAKGKIDLVCKLKKSLYGLKQSPRCWYKRFNDFINK 60
            +DV T  LHG L+E++YMEQP+GFE  GK  +VCKL KSLYGLKQ+PR WY +F+ F+  
Sbjct: 921  LDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKS 980

Query: 61   IGFMRSLYDPYVYYKKLTDGSLIYLLLYVNDMLLVGKNLTKLNKIK 107
              ++++  DP VY+K+ ++ + I LLLYV+DML+VGK+   + K+K
Sbjct: 981  QTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLK 1026

[Close]

BLAST of Cmc09g0249441 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.4e-18
Identity = 43/103 (41.75%), Postives = 69/103 (66.99%), Query Frame = 0


Query: 1    MDVTTTILHGSLKEDLYMEQPKGFEAKGKIDLVCKLKKSLYGLKQSPRCWYKRFNDFINK 60
            +DV    L G+L +D+YM QP GF  K + + VCKL+K+LYGLKQ+PR WY    +++  
Sbjct: 1064 LDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLT 1123

Query: 61   IGFMRSLYDPYVYYKKLTDGSLIYLLLYVNDMLLVGKNLTKLN 104
            IGF+ S+ D  ++  +    S++Y+L+YV+D+L+ G + T L+
Sbjct: 1124 IGFVNSVSDTSLFVLQ-RGKSIVYMLVYVDDILITGNDPTLLH 1165

[Close]

BLAST of Cmc09g0249441 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.9e-17
Identity = 40/102 (39.22%), Postives = 66/102 (64.71%), Query Frame = 0


Query: 1    MDVTTTILHGSLKEDLYMEQPKGFEAKGKIDLVCKLKKSLYGLKQSPRCWYKRFNDFINK 60
            +DV    L G+L +++YM QP GF  K + D VC+L+K++YGLKQ+PR WY     ++  
Sbjct: 1047 LDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLT 1106

Query: 61   IGFMRSLYDPYVYYKKLTDGSLIYLLLYVNDMLLVGKNLTKL 103
            +GF+ S+ D  ++  +    S+IY+L+YV+D+L+ G +   L
Sbjct: 1107 VGFVNSISDTSLFVLQ-RGRSIIYMLVYVDDILITGNDTVLL 1147

[Close]

BLAST of Cmc09g0249441 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 88.2 bits (217), Expect = 6.4e-17
Identity = 46/114 (40.35%), Postives = 72/114 (63.16%), Query Frame = 0


Query: 1    MDVTTTILHGSLKEDLYMEQPKGFEAKGKIDLVCKLKKSLYGLKQSPRCWYKRFNDFINK 60
            MDV T  L+G+LKE++YM  P+G       D VCKL K++YGLKQ+ RCW++ F   + +
Sbjct: 1001 MDVKTAFLNGTLKEEIYMRLPQGISCNS--DNVCKLNKAIYGLKQAARCWFEVFEQALKE 1060

Query: 61   IGFMRSLYDPYVYYKKLTDGSL---IYLLLYVNDMLLVGKNLTKLNKIKRTVEE 112
              F+ S  D  +Y   L  G++   IY+LLYV+D+++   ++T++N  KR + E
Sbjct: 1061 CEFVNSSVDRCIYI--LDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLME 1110

[Close]

BLAST of Cmc09g0249441 vs. ExPASy Swiss-Prot
Match: P0C2J7 (Transposon Ty4-H Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY4B-H PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.1e-08
Identity = 35/114 (30.70%), Postives = 57/114 (50.00%), Query Frame = 0


Query: 1    MDVTTTILHGSLKEDLYMEQPKGFEAKGKIDLVCKLKKSLYGLKQSPRCWYKRFNDFINK 60
            +D+    L+  L+E++Y+  P           V KL K+LYGLKQSP+ W      ++N 
Sbjct: 1382 LDINHAFLYAKLEEEIYIPHPHDRRC------VVKLNKALYGLKQSPKEWNDHLRQYLNG 1441

Query: 61   IGFMRSLYDPYVYYKKLTDGSLIYLLLYVNDMLLVGKNLTKL----NKIKRTVE 111
            IG   + Y P +Y    T+   + + +YV+D ++   N  +L    NK+K   E
Sbjct: 1442 IGLKDNSYTPGLYQ---TEDKNLMIAVYVDDCVIAASNEQRLDEFINKLKSNFE 1486

[Close]

BLAST of Cmc09g0249441 vs. ExPASy TrEMBL
Match: A0A5A7TXZ9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00700 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 6.1e-47
Identity = 95/110 (86.36%), Postives = 102/110 (92.73%), Query Frame = 0


Query: 1   MDVTTTILHGSLKEDLYMEQPKGFEAKGKIDLVCKLKKSLYGLKQSPRCWYKRFNDFINK 60
           MDVT   LHGSL+EDLYMEQPKGFEAKGKIDLVCKLKKSLYGLKQSPRCW KRF+DFINK
Sbjct: 204 MDVTIAFLHGSLEEDLYMEQPKGFEAKGKIDLVCKLKKSLYGLKQSPRCWNKRFDDFINK 263

Query: 61  IGFMRSLYDPYVYYKKLTDGSLIYLLLYVNDMLLVGKNLTKLNKIKRTVE 111
           IGFMRSLYDP VYYKKLT+GSLIYLLLYV+DMLL GKNLTKLN+IK  ++
Sbjct: 264 IGFMRSLYDPCVYYKKLTNGSLIYLLLYVDDMLLAGKNLTKLNEIKEQLK 313

[Close]

BLAST of Cmc09g0249441 vs. ExPASy TrEMBL
Match: A0A5D3BXB7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold145G00480 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 4.0e-46
Identity = 94/106 (88.68%), Postives = 99/106 (93.40%), Query Frame = 0


Query: 1   MDVTTTILHGSLKEDLYMEQPKGFEAKGKIDLVCKLKKSLYGLKQSPRCWYKRFNDFINK 60
           MDVTTT LHGSL+EDLYMEQ KGFEAKGK DLVCKLKKSLYGLKQSPRCWYKRF+ FINK
Sbjct: 206 MDVTTTFLHGSLEEDLYMEQHKGFEAKGKTDLVCKLKKSLYGLKQSPRCWYKRFDVFINK 265

Query: 61  IGFMRSLYDPYVYYKKLTDGSLIYLLLYVNDMLLVGKNLTKLNKIK 107
           IGFMRSLYDP VYYKKLTDGSLIYLLLYV++MLL GKN TKLN+IK
Sbjct: 266 IGFMRSLYDPLVYYKKLTDGSLIYLLLYVDNMLLAGKNFTKLNEIK 311

[Close]

BLAST of Cmc09g0249441 vs. ExPASy TrEMBL
Match: A0A5D3CT04 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold688G00190 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 3.4e-45
Identity = 92/110 (83.64%), Postives = 101/110 (91.82%), Query Frame = 0


Query: 1   MDVTTTILHGSLKEDLYMEQPKGFEAKGKIDLVCKLKKSLYGLKQSPRCWYKRFNDFINK 60
           MDVTTT LHGSL+ DLYMEQPKG +AKGK DLVCKLKKSLYGLKQSPR WYKRF+DFINK
Sbjct: 1   MDVTTTFLHGSLEADLYMEQPKGSKAKGKTDLVCKLKKSLYGLKQSPRFWYKRFDDFINK 60

Query: 61  IGFMRSLYDPYVYYKKLTDGSLIYLLLYVNDMLLVGKNLTKLNKIKRTVE 111
           IGFMRSLYDP VYYKKLTDGSL+YLLLYV+DMLL GKNLTKLN+I+  ++
Sbjct: 61  IGFMRSLYDPCVYYKKLTDGSLMYLLLYVDDMLLAGKNLTKLNEIREQLK 110

[Close]

BLAST of Cmc09g0249441 vs. ExPASy TrEMBL
Match: A0A5D3CW25 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1275G00010 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 3.4e-45
Identity = 93/110 (84.55%), Postives = 100/110 (90.91%), Query Frame = 0


Query: 1   MDVTTTILHGSLKEDLYMEQPKGFEAKGKIDLVCKLKKSLYGLKQSPRCWYKRFNDFINK 60
           MDVT   LHGSL+EDLYMEQPKGFEAKGKIDLVCKLKKSLYGLKQSPRCW KRF+DFINK
Sbjct: 1   MDVTIAFLHGSLEEDLYMEQPKGFEAKGKIDLVCKLKKSLYGLKQSPRCWNKRFDDFINK 60

Query: 61  IGFMRSLYDPYVYYKKLTDGSLIYLLLYVNDMLLVGKNLTKLNKIKRTVE 111
           IGFM SLYDP V YKKLT+GSLIYLLLYV+DMLL GKNLTKLN+IK  ++
Sbjct: 61  IGFMSSLYDPCVCYKKLTNGSLIYLLLYVDDMLLAGKNLTKLNEIKEQLK 110

[Close]

BLAST of Cmc09g0249441 vs. ExPASy TrEMBL
Match: A0A1S3BJM4 (retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo OX=3656 GN=LOC103490605 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 3.4e-45
Identity = 93/110 (84.55%), Postives = 100/110 (90.91%), Query Frame = 0


Query: 1   MDVTTTILHGSLKEDLYMEQPKGFEAKGKIDLVCKLKKSLYGLKQSPRCWYKRFNDFINK 60
           MDVT   LHGSL+EDLYMEQPKGFEAKGKIDLVCKLKKSLYGLKQSPRCW KRF+DFINK
Sbjct: 1   MDVTIAFLHGSLEEDLYMEQPKGFEAKGKIDLVCKLKKSLYGLKQSPRCWNKRFDDFINK 60

Query: 61  IGFMRSLYDPYVYYKKLTDGSLIYLLLYVNDMLLVGKNLTKLNKIKRTVE 111
           IGFM SLYDP V YKKLT+GSLIYLLLYV+DMLL GKNLTKLN+IK  ++
Sbjct: 61  IGFMSSLYDPCVCYKKLTNGSLIYLLLYVDDMLLAGKNLTKLNEIKEQLK 110

[Close]

BLAST of Cmc09g0249441 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 73.9 bits (180), Expect = 8.8e-14
Identity = 37/110 (33.64%), Postives = 69/110 (62.73%), Query Frame = 0


Query: 1   MDVTTTILHGSLKEDLYMEQPKGFEAKGKIDL----VCKLKKSLYGLKQSPRCWYKRFND 60
           +D++   L+G L E++YM+ P G+ A+    L    VC LKKS+YGLKQ+ R W+ +F+ 
Sbjct: 193 LDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSV 252

Query: 61  FINKIGFMRSLYDPYVYYKKLTDGSLIYLLLYVNDMLLVGKNLTKLNKIK 107
            +   GF++S +  + Y+ K+T    + +L+YV+D+++   N   ++++K
Sbjct: 253 TLIGFGFVQS-HSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELK 301

The following BLAST results are available for this feature:

BLAST of Cmc09g0249441 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047818.1	1.3e-46	86.36	retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK02789.1	8.2e-46	88.68	retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0046197.1	7.0e-45	83.64	retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
XP_008448404.1	7.0e-45	84.55	PREDICTED: retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis ...	[more]
CAJ65856.1	4.7e-33	93.51	putative reverse transcriptase, partial [Cucumis melo]	[more]

BLAST of Cmc09g0249441 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	2.3e-27	51.89	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q94HW2	3.4e-18	41.75	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	2.9e-17	39.22	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	6.4e-17	40.35	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P0C2J7	4.1e-08	30.70	Transposon Ty4-H Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc09g0249441 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TXZ9	6.1e-47	86.36	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3BXB7	4.0e-46	88.68	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3CT04	3.4e-45	83.64	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3CW25	3.4e-45	84.55	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A1S3BJM4	3.4e-45	84.55	retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo OX=3...	[more]

BLAST of Cmc09g0249441 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	8.8e-14	33.64	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 1..109 e-value: 1.2E-27 score: 97.1
None	No IPR available	PANTHER	PTHR11439:SF322	CLASSICAL ARABINOGALACTAN PROTEIN 9-LIKE	coord: 8..106
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 8..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc09g0249441.1	Cmc09g0249441.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050832	defense response to fungus
biological_process	GO:0000077	DNA damage checkpoint signaling
biological_process	GO:0015074	DNA integration
biological_process	GO:0006281	DNA repair
biological_process	GO:0033314	mitotic DNA replication checkpoint signaling
biological_process	GO:0016310	phosphorylation
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0032559	adenyl ribonucleotide binding
molecular_function	GO:0043168	anion binding
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity