Cmc09g0248581 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc09g0248581
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr09: 14170685 .. 14171317 (-)
RNA-Seq Expression	Cmc09g0248581
Synteny	Cmc09g0248581

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACTTCATCACCCATCTTTCTAAGGTAGGCGACTTTGAAGCCATCTTAGTCATCATTGATCGTTTTTCAAAGTATGCCACCTTCATCCCCACCACCAAGCAGTGTTCAGCAGAAATGACAGCTCAATTGTTCTTTAAGCATGTTGTTAAGTTGTGGGGAGTCCCAACAAGTATAGTGAGTGACAGGGATGGTAGATTCATTGGCTCCTTCTGGACGAAGTTATTTTCCTTCTTGAGGACAAGTCTGAACATATCCTCAAGCTACCATCCCCAAACTGACGGCCAGACTGAGCGATTCAACTACATGCTCGAGGAATACTTGCGCCATTTTGTAAACGCAAGGCAAAAGAACTGGGTCCAGCTGTTGGACATAACCCAATTCTGTTTCAACGGGCAGGCAAGTTCATCTACAGAGAGAAGCCCGTTTGAGATTGTTTCTGGGAGGCAACCAGTACTGCCACACCTTGTTGATCATCCCTTTGCAGGGAAGAACCCTCAAGTCCTCAATTTCACGAAGGAGTGGAAACAAACGAACGACATCGATCGAGTGTACTTAGAAAAAGCGTTGAAGCGGATGAAGAAGTGGGCAGATAAGAAGCGACGGCCTCTTGAGTTTCGGGCGGGAGACTAG

mRNA sequence

ATGGACTTCATCACCCATCTTTCTAAGGTAGGCGACTTTGAAGCCATCTTAGTCATCATTGATCGTTTTTCAAAGTATGCCACCTTCATCCCCACCACCAAGCAGTGTTCAGCAGAAATGACAGCTCAATTGTTCTTTAAGCATGTTGTTAAGTTGTGGGGAGTCCCAACAAGTATAGTGAGTGACAGGGATGGTAGATTCATTGGCTCCTTCTGGACGAAGTTATTTTCCTTCTTGAGGACAAGTCTGAACATATCCTCAAGCTACCATCCCCAAACTGACGGCCAGACTGAGCGATTCAACTACATGCTCGAGGAATACTTGCGCCATTTTGTAAACGCAAGGCAAAAGAACTGGGTCCAGCTGTTGGACATAACCCAATTCTGTTTCAACGGGCAGGCAAGTTCATCTACAGAGAGAAGCCCGTTTGAGATTGTTTCTGGGAGGCAACCAGTACTGCCACACCTTGTTGATCATCCCTTTGCAGGGAAGAACCCTCAAGTCCTCAATTTCACGAAGGAGTGGAAACAAACGAACGACATCGATCGAGTGTACTTAGAAAAAGCGTTGAAGCGGATGAAGAAGTGGGCAGATAAGAAGCGACGGCCTCTTGAGTTTCGGGCGGGAGACTAG

Coding sequence (CDS)

ATGGACTTCATCACCCATCTTTCTAAGGTAGGCGACTTTGAAGCCATCTTAGTCATCATTGATCGTTTTTCAAAGTATGCCACCTTCATCCCCACCACCAAGCAGTGTTCAGCAGAAATGACAGCTCAATTGTTCTTTAAGCATGTTGTTAAGTTGTGGGGAGTCCCAACAAGTATAGTGAGTGACAGGGATGGTAGATTCATTGGCTCCTTCTGGACGAAGTTATTTTCCTTCTTGAGGACAAGTCTGAACATATCCTCAAGCTACCATCCCCAAACTGACGGCCAGACTGAGCGATTCAACTACATGCTCGAGGAATACTTGCGCCATTTTGTAAACGCAAGGCAAAAGAACTGGGTCCAGCTGTTGGACATAACCCAATTCTGTTTCAACGGGCAGGCAAGTTCATCTACAGAGAGAAGCCCGTTTGAGATTGTTTCTGGGAGGCAACCAGTACTGCCACACCTTGTTGATCATCCCTTTGCAGGGAAGAACCCTCAAGTCCTCAATTTCACGAAGGAGTGGAAACAAACGAACGACATCGATCGAGTGTACTTAGAAAAAGCGTTGAAGCGGATGAAGAAGTGGGCAGATAAGAAGCGACGGCCTCTTGAGTTTCGGGCGGGAGACTAG

Protein sequence

MDFITHLSKVGDFEAILVIIDRFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTKLFSFLRTSLNISSSYHPQTDGQTERFNYMLEEYLRHFVNARQKNWVQLLDITQFCFNGQASSSTERSPFEIVSGRQPVLPHLVDHPFAGKNPQVLNFTKEWKQTNDIDRVYLEKALKRMKKWADKKRRPLEFRAGD

Homology

[Close]

BLAST of Cmc09g0248581 vs. NCBI nr
Match: KAA0057282.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 407.5 bits (1046), Expect = 6.9e-110
Identity = 197/210 (93.81%), Postives = 198/210 (94.29%), Query Frame = 0


Query: 1   MDFITHLSKVGDFEAILVIIDRFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIV 60
           MDFITHL KVGDFEAILVIID FSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIV
Sbjct: 44  MDFITHLPKVGDFEAILVIIDSFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIV 103

Query: 61  SDRDGRFIGSFWTKLFSFLRTSLNISSSYHPQTDGQTERFNYMLEEYLRHFVNARQKNWV 120
           SDRDGRFIGSFWTKLFSFLRTSLNISSSYHPQTDGQTERFN MLEEYLRHFVNARQKNWV
Sbjct: 104 SDRDGRFIGSFWTKLFSFLRTSLNISSSYHPQTDGQTERFNCMLEEYLRHFVNARQKNWV 163

Query: 121 QLLDITQFCFNGQASSSTERSPFEIVSGRQPVLPHLVDHPFAGKNPQVLNFTKEWKQTND 180
           QLLD+ QFCFN Q SSST RSPFEIVSGRQPVLPHLVDHPF GKNPQ LNFTKEWKQTND
Sbjct: 164 QLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLVDHPFTGKNPQALNFTKEWKQTND 223

Query: 181 IDRVYLEKALKRMKKWADKKRRPLEFRAGD 211
           I R YLEKA KRMKKWADKKRRPLEFRAGD
Sbjct: 224 IARAYLEKASKRMKKWADKKRRPLEFRAGD 253

[Close]

BLAST of Cmc09g0248581 vs. NCBI nr
Match: TYK01597.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 407.1 bits (1045), Expect = 9.0e-110
Identity = 197/210 (93.81%), Postives = 199/210 (94.76%), Query Frame = 0


Query: 1    MDFITHLSKVGDFEAILVIIDRFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIV 60
            MDFITHL KVGDFEAILVIIDRFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIV
Sbjct: 1206 MDFITHLPKVGDFEAILVIIDRFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIV 1265

Query: 61   SDRDGRFIGSFWTKLFSFLRTSLNISSSYHPQTDGQTERFNYMLEEYLRHFVNARQKNWV 120
            SDRDGRFIGSFWT+LFSFL TSLNISSSYHPQTDGQTERFN MLEEYLRHFVNARQKNWV
Sbjct: 1266 SDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERFNCMLEEYLRHFVNARQKNWV 1325

Query: 121  QLLDITQFCFNGQASSSTERSPFEIVSGRQPVLPHLVDHPFAGKNPQVLNFTKEWKQTND 180
            QLLD+ QFCFN Q SSST RSPFEIVSGRQPVLPHLVDHPFAGKNPQ LNFTKEWKQTND
Sbjct: 1326 QLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTND 1385

Query: 181  IDRVYLEKALKRMKKWADKKRRPLEFRAGD 211
            I R YLEKA KRMKKWADKKRRPLEFRAGD
Sbjct: 1386 IARAYLEKASKRMKKWADKKRRPLEFRAGD 1415

[Close]

BLAST of Cmc09g0248581 vs. NCBI nr
Match: TYK08407.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 402.9 bits (1034), Expect = 1.7e-108
Identity = 195/210 (92.86%), Postives = 197/210 (93.81%), Query Frame = 0


Query: 1   MDFITHLSKVGDFEAILVIIDRFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIV 60
           MDFITHL KVGDFEAILVIIDRFSKYATFIP TKQCSAE TAQLFFKHVVKLWGVPTSIV
Sbjct: 706 MDFITHLPKVGDFEAILVIIDRFSKYATFIPATKQCSAETTAQLFFKHVVKLWGVPTSIV 765

Query: 61  SDRDGRFIGSFWTKLFSFLRTSLNISSSYHPQTDGQTERFNYMLEEYLRHFVNARQKNWV 120
           SDRDGRFIGSFWT+LFSFL TSLNISSSYHPQTDGQTERFN MLEEYLRHFVNARQKNWV
Sbjct: 766 SDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWV 825

Query: 121 QLLDITQFCFNGQASSSTERSPFEIVSGRQPVLPHLVDHPFAGKNPQVLNFTKEWKQTND 180
           QLLD+ QFCFN Q SSST RSPFEIVSGRQPVLPHLVDHPFAGKNPQ LNFTKEWKQTND
Sbjct: 826 QLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTND 885

Query: 181 IDRVYLEKALKRMKKWADKKRRPLEFRAGD 211
           I R YLEKA KRMKKWADKKRRPLEFRAGD
Sbjct: 886 IARAYLEKASKRMKKWADKKRRPLEFRAGD 915

[Close]

BLAST of Cmc09g0248581 vs. NCBI nr
Match: KAA0067557.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 401.7 bits (1031), Expect = 3.8e-108
Identity = 194/210 (92.38%), Postives = 197/210 (93.81%), Query Frame = 0


Query: 1    MDFITHLSKVGDFEAILVIIDRFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIV 60
            MDFITHL KVGDFEAILVIIDRFSKYATFIP TKQCSAE TAQLFFKHVVKLWGVPTSIV
Sbjct: 1223 MDFITHLPKVGDFEAILVIIDRFSKYATFIPATKQCSAETTAQLFFKHVVKLWGVPTSIV 1282

Query: 61   SDRDGRFIGSFWTKLFSFLRTSLNISSSYHPQTDGQTERFNYMLEEYLRHFVNARQKNWV 120
            SDRDGRFIGSFWT+LFSFL TSLNISSSYHPQTDGQTERFN MLEEYLRHFVNARQKNWV
Sbjct: 1283 SDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWV 1342

Query: 121  QLLDITQFCFNGQASSSTERSPFEIVSGRQPVLPHLVDHPFAGKNPQVLNFTKEWKQTND 180
            QLLD+ QFCFN Q SSST RSPFEIVSGRQPVLPHLVDHPFAGKNPQ LNFTKEW+QTND
Sbjct: 1343 QLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWRQTND 1402

Query: 181  IDRVYLEKALKRMKKWADKKRRPLEFRAGD 211
            I R YLEKA KRMKKWADKKRRPLEFRAGD
Sbjct: 1403 IARAYLEKASKRMKKWADKKRRPLEFRAGD 1432

[Close]

BLAST of Cmc09g0248581 vs. NCBI nr
Match: KAA0037220.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcriptase [Cucumis melo var. makuwa] >TYJ99001.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK01698.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK02882.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 401.7 bits (1031), Expect = 3.8e-108
Identity = 194/210 (92.38%), Postives = 197/210 (93.81%), Query Frame = 0


Query: 1    MDFITHLSKVGDFEAILVIIDRFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIV 60
            MDFITHL KVGDFEAILVIIDRFSKYATFIP TKQCSAE TAQLFFKHVVKLWGVPTSIV
Sbjct: 1227 MDFITHLPKVGDFEAILVIIDRFSKYATFIPATKQCSAETTAQLFFKHVVKLWGVPTSIV 1286

Query: 61   SDRDGRFIGSFWTKLFSFLRTSLNISSSYHPQTDGQTERFNYMLEEYLRHFVNARQKNWV 120
            SDRDGRFIGSFWT+LFSFL TSLNISSSYHPQTDGQTERFN MLEEYLRHFVNARQKNWV
Sbjct: 1287 SDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWV 1346

Query: 121  QLLDITQFCFNGQASSSTERSPFEIVSGRQPVLPHLVDHPFAGKNPQVLNFTKEWKQTND 180
            QLLD+ QFCFN Q SSST RSPFEIVSGRQPVLPHLVDHPFAGKNPQ LNFTKEW+QTND
Sbjct: 1347 QLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWRQTND 1406

Query: 181  IDRVYLEKALKRMKKWADKKRRPLEFRAGD 211
            I R YLEKA KRMKKWADKKRRPLEFRAGD
Sbjct: 1407 IARAYLEKASKRMKKWADKKRRPLEFRAGD 1436

[Close]

BLAST of Cmc09g0248581 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.0e-28
Identity = 77/218 (35.32%), Postives = 108/218 (49.54%), Query Frame = 0


Query: 1    MDFITHLSKVGDFEAILVIIDRFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIV 60
            MDFIT L +   + A+ V++DRFSK A  +P TK  +AE TA++F + V+  +G P  I+
Sbjct: 989  MDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEII 1048

Query: 61   SDRDGRFIGSFWTKLFSFLRTSLNISSSYHPQTDGQTERFNYMLEEYLRHFVNARQKNWV 120
            +D D  F    W          +  S  Y PQTDGQTER N  +E+ LR   +     WV
Sbjct: 1049 ADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWV 1108

Query: 121  QLLDITQFCFNGQASSSTERSPFEIVSGRQPVLPHLVDHPFAGKNP-------QVLNFTK 180
              + + Q  +N    S+T+ +PFEIV    P L  L    F+ K         QV    K
Sbjct: 1109 DHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTDENSQETIQVFQTVK 1168

Query: 181  EWKQTNDIDRVYLEKALKRMKKWADKKRRPL-EFRAGD 211
            E   TN+I          +MKK+ D K + + EF+ GD
Sbjct: 1169 EHLNTNNI----------KMKKYFDMKIQEIEEFQPGD 1196

[Close]

BLAST of Cmc09g0248581 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.0e-28
Identity = 77/218 (35.32%), Postives = 108/218 (49.54%), Query Frame = 0


Query: 1    MDFITHLSKVGDFEAILVIIDRFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIV 60
            MDFIT L +   + A+ V++DRFSK A  +P TK  +AE TA++F + V+  +G P  I+
Sbjct: 989  MDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEII 1048

Query: 61   SDRDGRFIGSFWTKLFSFLRTSLNISSSYHPQTDGQTERFNYMLEEYLRHFVNARQKNWV 120
            +D D  F    W          +  S  Y PQTDGQTER N  +E+ LR   +     WV
Sbjct: 1049 ADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWV 1108

Query: 121  QLLDITQFCFNGQASSSTERSPFEIVSGRQPVLPHLVDHPFAGKNP-------QVLNFTK 180
              + + Q  +N    S+T+ +PFEIV    P L  L    F+ K         QV    K
Sbjct: 1109 DHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTDENSQETIQVFQTVK 1168

Query: 181  EWKQTNDIDRVYLEKALKRMKKWADKKRRPL-EFRAGD 211
            E   TN+I          +MKK+ D K + + EF+ GD
Sbjct: 1169 EHLNTNNI----------KMKKYFDMKIQEIEEFQPGD 1196

[Close]

BLAST of Cmc09g0248581 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.0e-28
Identity = 77/218 (35.32%), Postives = 108/218 (49.54%), Query Frame = 0


Query: 1    MDFITHLSKVGDFEAILVIIDRFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIV 60
            MDFIT L +   + A+ V++DRFSK A  +P TK  +AE TA++F + V+  +G P  I+
Sbjct: 989  MDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEII 1048

Query: 61   SDRDGRFIGSFWTKLFSFLRTSLNISSSYHPQTDGQTERFNYMLEEYLRHFVNARQKNWV 120
            +D D  F    W          +  S  Y PQTDGQTER N  +E+ LR   +     WV
Sbjct: 1049 ADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWV 1108

Query: 121  QLLDITQFCFNGQASSSTERSPFEIVSGRQPVLPHLVDHPFAGKNP-------QVLNFTK 180
              + + Q  +N    S+T+ +PFEIV    P L  L    F+ K         QV    K
Sbjct: 1109 DHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTDENSQETIQVFQTVK 1168

Query: 181  EWKQTNDIDRVYLEKALKRMKKWADKKRRPL-EFRAGD 211
            E   TN+I          +MKK+ D K + + EF+ GD
Sbjct: 1169 EHLNTNNI----------KMKKYFDMKIQEIEEFQPGD 1196

[Close]

BLAST of Cmc09g0248581 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.0e-28
Identity = 77/218 (35.32%), Postives = 108/218 (49.54%), Query Frame = 0


Query: 1    MDFITHLSKVGDFEAILVIIDRFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIV 60
            MDFIT L +   + A+ V++DRFSK A  +P TK  +AE TA++F + V+  +G P  I+
Sbjct: 989  MDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEII 1048

Query: 61   SDRDGRFIGSFWTKLFSFLRTSLNISSSYHPQTDGQTERFNYMLEEYLRHFVNARQKNWV 120
            +D D  F    W          +  S  Y PQTDGQTER N  +E+ LR   +     WV
Sbjct: 1049 ADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWV 1108

Query: 121  QLLDITQFCFNGQASSSTERSPFEIVSGRQPVLPHLVDHPFAGKNP-------QVLNFTK 180
              + + Q  +N    S+T+ +PFEIV    P L  L    F+ K         QV    K
Sbjct: 1109 DHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTDENSQETIQVFQTVK 1168

Query: 181  EWKQTNDIDRVYLEKALKRMKKWADKKRRPL-EFRAGD 211
            E   TN+I          +MKK+ D K + + EF+ GD
Sbjct: 1169 EHLNTNNI----------KMKKYFDMKIQEIEEFQPGD 1196

[Close]

BLAST of Cmc09g0248581 vs. ExPASy Swiss-Prot
Match: P0CT36 (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.0e-28
Identity = 77/218 (35.32%), Postives = 108/218 (49.54%), Query Frame = 0


Query: 1    MDFITHLSKVGDFEAILVIIDRFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIV 60
            MDFIT L +   + A+ V++DRFSK A  +P TK  +AE TA++F + V+  +G P  I+
Sbjct: 989  MDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEII 1048

Query: 61   SDRDGRFIGSFWTKLFSFLRTSLNISSSYHPQTDGQTERFNYMLEEYLRHFVNARQKNWV 120
            +D D  F    W          +  S  Y PQTDGQTER N  +E+ LR   +     WV
Sbjct: 1049 ADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWV 1108

Query: 121  QLLDITQFCFNGQASSSTERSPFEIVSGRQPVLPHLVDHPFAGKNP-------QVLNFTK 180
              + + Q  +N    S+T+ +PFEIV    P L  L    F+ K         QV    K
Sbjct: 1109 DHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTDENSQETIQVFQTVK 1168

Query: 181  EWKQTNDIDRVYLEKALKRMKKWADKKRRPL-EFRAGD 211
            E   TN+I          +MKK+ D K + + EF+ GD
Sbjct: 1169 EHLNTNNI----------KMKKYFDMKIQEIEEFQPGD 1196

[Close]

BLAST of Cmc09g0248581 vs. ExPASy TrEMBL
Match: A0A5A7UN48 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G001230 PE=4 SV=1)

HSP 1 Score: 407.5 bits (1046), Expect = 3.3e-110
Identity = 197/210 (93.81%), Postives = 198/210 (94.29%), Query Frame = 0


Query: 1   MDFITHLSKVGDFEAILVIIDRFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIV 60
           MDFITHL KVGDFEAILVIID FSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIV
Sbjct: 44  MDFITHLPKVGDFEAILVIIDSFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIV 103

Query: 61  SDRDGRFIGSFWTKLFSFLRTSLNISSSYHPQTDGQTERFNYMLEEYLRHFVNARQKNWV 120
           SDRDGRFIGSFWTKLFSFLRTSLNISSSYHPQTDGQTERFN MLEEYLRHFVNARQKNWV
Sbjct: 104 SDRDGRFIGSFWTKLFSFLRTSLNISSSYHPQTDGQTERFNCMLEEYLRHFVNARQKNWV 163

Query: 121 QLLDITQFCFNGQASSSTERSPFEIVSGRQPVLPHLVDHPFAGKNPQVLNFTKEWKQTND 180
           QLLD+ QFCFN Q SSST RSPFEIVSGRQPVLPHLVDHPF GKNPQ LNFTKEWKQTND
Sbjct: 164 QLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLVDHPFTGKNPQALNFTKEWKQTND 223

Query: 181 IDRVYLEKALKRMKKWADKKRRPLEFRAGD 211
           I R YLEKA KRMKKWADKKRRPLEFRAGD
Sbjct: 224 IARAYLEKASKRMKKWADKKRRPLEFRAGD 253

[Close]

BLAST of Cmc09g0248581 vs. ExPASy TrEMBL
Match: A0A5D3BQE4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G001890 PE=4 SV=1)

HSP 1 Score: 407.1 bits (1045), Expect = 4.3e-110
Identity = 197/210 (93.81%), Postives = 199/210 (94.76%), Query Frame = 0


Query: 1    MDFITHLSKVGDFEAILVIIDRFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIV 60
            MDFITHL KVGDFEAILVIIDRFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIV
Sbjct: 1206 MDFITHLPKVGDFEAILVIIDRFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIV 1265

Query: 61   SDRDGRFIGSFWTKLFSFLRTSLNISSSYHPQTDGQTERFNYMLEEYLRHFVNARQKNWV 120
            SDRDGRFIGSFWT+LFSFL TSLNISSSYHPQTDGQTERFN MLEEYLRHFVNARQKNWV
Sbjct: 1266 SDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERFNCMLEEYLRHFVNARQKNWV 1325

Query: 121  QLLDITQFCFNGQASSSTERSPFEIVSGRQPVLPHLVDHPFAGKNPQVLNFTKEWKQTND 180
            QLLD+ QFCFN Q SSST RSPFEIVSGRQPVLPHLVDHPFAGKNPQ LNFTKEWKQTND
Sbjct: 1326 QLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTND 1385

Query: 181  IDRVYLEKALKRMKKWADKKRRPLEFRAGD 211
            I R YLEKA KRMKKWADKKRRPLEFRAGD
Sbjct: 1386 IARAYLEKASKRMKKWADKKRRPLEFRAGD 1415

[Close]

BLAST of Cmc09g0248581 vs. ExPASy TrEMBL
Match: A0A5D3C8W7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold654G00190 PE=4 SV=1)

HSP 1 Score: 402.9 bits (1034), Expect = 8.2e-109
Identity = 195/210 (92.86%), Postives = 197/210 (93.81%), Query Frame = 0


Query: 1   MDFITHLSKVGDFEAILVIIDRFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIV 60
           MDFITHL KVGDFEAILVIIDRFSKYATFIP TKQCSAE TAQLFFKHVVKLWGVPTSIV
Sbjct: 706 MDFITHLPKVGDFEAILVIIDRFSKYATFIPATKQCSAETTAQLFFKHVVKLWGVPTSIV 765

Query: 61  SDRDGRFIGSFWTKLFSFLRTSLNISSSYHPQTDGQTERFNYMLEEYLRHFVNARQKNWV 120
           SDRDGRFIGSFWT+LFSFL TSLNISSSYHPQTDGQTERFN MLEEYLRHFVNARQKNWV
Sbjct: 766 SDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWV 825

Query: 121 QLLDITQFCFNGQASSSTERSPFEIVSGRQPVLPHLVDHPFAGKNPQVLNFTKEWKQTND 180
           QLLD+ QFCFN Q SSST RSPFEIVSGRQPVLPHLVDHPFAGKNPQ LNFTKEWKQTND
Sbjct: 826 QLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTND 885

Query: 181 IDRVYLEKALKRMKKWADKKRRPLEFRAGD 211
           I R YLEKA KRMKKWADKKRRPLEFRAGD
Sbjct: 886 IARAYLEKASKRMKKWADKKRRPLEFRAGD 915

[Close]

BLAST of Cmc09g0248581 vs. ExPASy TrEMBL
Match: A0A5D3C4R1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001990 PE=4 SV=1)

HSP 1 Score: 401.7 bits (1031), Expect = 1.8e-108
Identity = 194/210 (92.38%), Postives = 197/210 (93.81%), Query Frame = 0


Query: 1    MDFITHLSKVGDFEAILVIIDRFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIV 60
            MDFITHL KVGDFEAILVIIDRFSKYATFIP TKQCSAE TAQLFFKHVVKLWGVPTSIV
Sbjct: 1227 MDFITHLPKVGDFEAILVIIDRFSKYATFIPATKQCSAETTAQLFFKHVVKLWGVPTSIV 1286

Query: 61   SDRDGRFIGSFWTKLFSFLRTSLNISSSYHPQTDGQTERFNYMLEEYLRHFVNARQKNWV 120
            SDRDGRFIGSFWT+LFSFL TSLNISSSYHPQTDGQTERFN MLEEYLRHFVNARQKNWV
Sbjct: 1287 SDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWV 1346

Query: 121  QLLDITQFCFNGQASSSTERSPFEIVSGRQPVLPHLVDHPFAGKNPQVLNFTKEWKQTND 180
            QLLD+ QFCFN Q SSST RSPFEIVSGRQPVLPHLVDHPFAGKNPQ LNFTKEW+QTND
Sbjct: 1347 QLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWRQTND 1406

Query: 181  IDRVYLEKALKRMKKWADKKRRPLEFRAGD 211
            I R YLEKA KRMKKWADKKRRPLEFRAGD
Sbjct: 1407 IARAYLEKASKRMKKWADKKRRPLEFRAGD 1436

[Close]

BLAST of Cmc09g0248581 vs. ExPASy TrEMBL
Match: A0A5D3BRZ6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00060 PE=4 SV=1)

HSP 1 Score: 401.7 bits (1031), Expect = 1.8e-108
Identity = 194/210 (92.38%), Postives = 197/210 (93.81%), Query Frame = 0


Query: 1    MDFITHLSKVGDFEAILVIIDRFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIV 60
            MDFITHL KVGDFEAILVIIDRFSKYATFIP TKQCSAE TAQLFFKHVVKLWGVPTSIV
Sbjct: 1227 MDFITHLPKVGDFEAILVIIDRFSKYATFIPATKQCSAETTAQLFFKHVVKLWGVPTSIV 1286

Query: 61   SDRDGRFIGSFWTKLFSFLRTSLNISSSYHPQTDGQTERFNYMLEEYLRHFVNARQKNWV 120
            SDRDGRFIGSFWT+LFSFL TSLNISSSYHPQTDGQTERFN MLEEYLRHFVNARQKNWV
Sbjct: 1287 SDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERFNSMLEEYLRHFVNARQKNWV 1346

Query: 121  QLLDITQFCFNGQASSSTERSPFEIVSGRQPVLPHLVDHPFAGKNPQVLNFTKEWKQTND 180
            QLLD+ QFCFN Q SSST RSPFEIVSGRQPVLPHLVDHPFAGKNPQ LNFTKEW+QTND
Sbjct: 1347 QLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWRQTND 1406

Query: 181  IDRVYLEKALKRMKKWADKKRRPLEFRAGD 211
            I R YLEKA KRMKKWADKKRRPLEFRAGD
Sbjct: 1407 IARAYLEKASKRMKKWADKKRRPLEFRAGD 1436

The following BLAST results are available for this feature:

BLAST of Cmc09g0248581 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0057282.1	6.9e-110	93.81	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK01597.1	9.0e-110	93.81	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK08407.1	1.7e-108	92.86	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0067557.1	3.8e-108	92.38	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0037220.1	3.8e-108	92.38	reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcripta...	[more]

BLAST of Cmc09g0248581 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9UR07	4.0e-28	35.32	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	4.0e-28	35.32	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	4.0e-28	35.32	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	4.0e-28	35.32	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT36	4.0e-28	35.32	Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc09g0248581 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UN48	3.3e-110	93.81	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold28...	[more]
A0A5D3BQE4	4.3e-110	93.81	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45...	[more]
A0A5D3C8W7	8.2e-109	92.86	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold65...	[more]
A0A5D3C4R1	1.8e-108	92.38	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5D3BRZ6	1.8e-108	92.38	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]

BLAST of Cmc09g0248581 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..186 e-value: 1.0E-38 score: 134.6
None	No IPR available	PANTHER	PTHR46148	FAMILY NOT NAMED	coord: 3..162
None	No IPR available	PANTHER	PTHR46148:SF35	ZINC FINGER, CCHC-TYPE-RELATED	coord: 3..162
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..150 score: 19.015263
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 1..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc09g0248581.1	Cmc09g0248581.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding