Cmc09g0248241 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc09g0248241
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	DNA/RNA polymerases superfamily protein
Location	CMiso1.1chr09: 13525564 .. 13526247 (-)
RNA-Seq Expression	Cmc09g0248241
Synteny	Cmc09g0248241

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCCCTATTCCTCGAATTGGTGATCTTTTAGATCAATTGGGCAAGGCTACTATCTTTTCGAAGATTGATCTAAGAAGTGGCTACCATCATATACGTATTAGACCAGGAGATGAATGGAAAACAGCATTTAAAACTAATGAAGGCTTGTTTGAATGGATGGTTATGCCATTTGGATTATCCAATGCACCCAGCACCTTCATGAGATTGATGAATCAGGTGCTCGATCCTTTCCTCAACAAATTTTTAGTAGTCTACTTTGATGATATACTCATTTACAGTGATGGAAAGGATGAACACATGTTGCATCTCAGGAAACTGTTTCAAGTGCTGACTGAAACAGAATTATATATCAATCAGAAGAAATGTGTCTTTCTAAAGGAAAAAATTTCTTTTCTTGGGTTCATCATCAAAGAAGAGAAGATTAGTATGGAACTTAAGAAGACTGAAGCAATTAGAACTTGGCCAATCCCAACTTCTATTAAAGAAATCCAAGCCTTTCTTGGATTAGCTTCTTTTTACAGGAAGTTCATAAAGAATTTTAGTTCTATTATTGTTCCACTCACCAAATGCTTAAAGAAGGGGAACTTTAAGTGGATTATACAGCAACAAGAAAGCTTCGATAACATCAAGAAGAAACTGAGAGCCTATATTACAACTTCCAGACTTCACTTCACCTTTTGA

mRNA sequence

ATGTTCCCTATTCCTCGAATTGGTGATCTTTTAGATCAATTGGGCAAGGCTACTATCTTTTCGAAGATTGATCTAAGAAGTGGCTACCATCATATACGTATTAGACCAGGAGATGAATGGAAAACAGCATTTAAAACTAATGAAGGCTTGTTTGAATGGATGGTTATGCCATTTGGATTATCCAATGCACCCAGCACCTTCATGAGATTGATGAATCAGGTGCTCGATCCTTTCCTCAACAAATTTTTAGTAGTCTACTTTGATGATATACTCATTTACAGTGATGGAAAGGATGAACACATGTTGCATCTCAGGAAACTGTTTCAAGTGCTGACTGAAACAGAATTATATATCAATCAGAAGAAATGTGTCTTTCTAAAGGAAAAAATTTCTTTTCTTGGGTTCATCATCAAAGAAGAGAAGATTAGTATGGAACTTAAGAAGACTGAAGCAATTAGAACTTGGCCAATCCCAACTTCTATTAAAGAAATCCAAGCCTTTCTTGGATTAGCTTCTTTTTACAGGAAGTTCATAAAGAATTTTAGTTCTATTATTGTTCCACTCACCAAATGCTTAAAGAAGGGGAACTTTAAGTGGATTATACAGCAACAAGAAAGCTTCGATAACATCAAGAAGAAACTGAGAGCCTATATTACAACTTCCAGACTTCACTTCACCTTTTGA

Coding sequence (CDS)

ATGTTCCCTATTCCTCGAATTGGTGATCTTTTAGATCAATTGGGCAAGGCTACTATCTTTTCGAAGATTGATCTAAGAAGTGGCTACCATCATATACGTATTAGACCAGGAGATGAATGGAAAACAGCATTTAAAACTAATGAAGGCTTGTTTGAATGGATGGTTATGCCATTTGGATTATCCAATGCACCCAGCACCTTCATGAGATTGATGAATCAGGTGCTCGATCCTTTCCTCAACAAATTTTTAGTAGTCTACTTTGATGATATACTCATTTACAGTGATGGAAAGGATGAACACATGTTGCATCTCAGGAAACTGTTTCAAGTGCTGACTGAAACAGAATTATATATCAATCAGAAGAAATGTGTCTTTCTAAAGGAAAAAATTTCTTTTCTTGGGTTCATCATCAAAGAAGAGAAGATTAGTATGGAACTTAAGAAGACTGAAGCAATTAGAACTTGGCCAATCCCAACTTCTATTAAAGAAATCCAAGCCTTTCTTGGATTAGCTTCTTTTTACAGGAAGTTCATAAAGAATTTTAGTTCTATTATTGTTCCACTCACCAAATGCTTAAAGAAGGGGAACTTTAAGTGGATTATACAGCAACAAGAAAGCTTCGATAACATCAAGAAGAAACTGAGAGCCTATATTACAACTTCCAGACTTCACTTCACCTTTTGA

Protein sequence

MFPIPRIGDLLDQLGKATIFSKIDLRSGYHHIRIRPGDEWKTAFKTNEGLFEWMVMPFGLSNAPSTFMRLMNQVLDPFLNKFLVVYFDDILIYSDGKDEHMLHLRKLFQVLTETELYINQKKCVFLKEKISFLGFIIKEEKISMELKKTEAIRTWPIPTSIKEIQAFLGLASFYRKFIKNFSSIIVPLTKCLKKGNFKWIIQQQESFDNIKKKLRAYITTSRLHFTF

Homology

[Close]

BLAST of Cmc09g0248241 vs. NCBI nr
Match: TYK26683.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 434.1 bits (1115), Expect = 7.4e-118
Identity = 214/216 (99.07%), Postives = 215/216 (99.54%), Query Frame = 0


Query: 12  DQLGKATIFSKIDLRSGYHHIRIRPGDEWKTAFKTNEGLFEWMVMPFGLSNAPSTFMRLM 71
           +QLGKATIFSKIDLRSGYHHIRIRPGDEWKTAFKTNEGLFEWMVMPFGLSNAPSTFMRLM
Sbjct: 109 NQLGKATIFSKIDLRSGYHHIRIRPGDEWKTAFKTNEGLFEWMVMPFGLSNAPSTFMRLM 168

Query: 72  NQVLDPFLNKFLVVYFDDILIYSDGKDEHMLHLRKLFQVLTETELYINQKKCVFLKEKIS 131
           NQVLDPFLNKFLVVYFDDILIYSDGKDEHMLHLRKLFQVLTETELYINQKKCVFLKEKIS
Sbjct: 169 NQVLDPFLNKFLVVYFDDILIYSDGKDEHMLHLRKLFQVLTETELYINQKKCVFLKEKIS 228

Query: 132 FLGFIIKEEKISMELKKTEAIRTWPIPTSIKEIQAFLGLASFYRKFIKNFSSIIVPLTKC 191
           FLGFIIKEEKISME KKTEAIRTWPIPTSIKEIQAFLGLASFYRKFIKNFSSIIVPLTKC
Sbjct: 229 FLGFIIKEEKISMEPKKTEAIRTWPIPTSIKEIQAFLGLASFYRKFIKNFSSIIVPLTKC 288

Query: 192 LKKGNFKWIIQQQESFDNIKKKLRAYITTSRLHFTF 228
           LKKGNFKWIIQQQESFDNIKKKLRAYITTSRLHFTF
Sbjct: 289 LKKGNFKWIIQQQESFDNIKKKLRAYITTSRLHFTF 324

[Close]

BLAST of Cmc09g0248241 vs. NCBI nr
Match: KAA0063033.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 324.3 bits (830), Expect = 8.2e-85
Identity = 154/203 (75.86%), Postives = 176/203 (86.70%), Query Frame = 0


Query: 2   FPIPRIGDLLDQLGKATIFSKIDLRSGYHHIRIRPGDEWKTAFKTNEGLFEWMVMPFGLS 61
           FPIPRIGDLLDQLGKAT+FSKIDLR GYH    RPGDEWKTAF TNE LF+W+VMPFGLS
Sbjct: 5   FPIPRIGDLLDQLGKATVFSKIDLRIGYH----RPGDEWKTAFNTNEELFKWLVMPFGLS 64

Query: 62  NAPSTFMRLMNQVLDPFLNKFLVVYFDDILIYSDGKDEHMLHLRKLFQVLTETELYINQK 121
           NAPSTFMRLMNQVL PFLN+F+VVYFDDIL+YS  +++H+ HLRKLFQVLTE ELYIN K
Sbjct: 65  NAPSTFMRLMNQVLYPFLNQFIVVYFDDILVYSSSREDHLQHLRKLFQVLTEIELYINPK 124

Query: 122 KCVFLKEKISFLGFIIKEEKISMELKKTEAIRTWPIPTSIKEIQAFLGLASFYRKFIKNF 181
           KC FL ++I FLGF+IKE KI +E KK EAI++WP+PT IKE+Q FLGLASFY++FI+NF
Sbjct: 125 KCTFLTKEIVFLGFLIKEGKIGIEPKKVEAIQSWPVPTFIKEVQGFLGLASFYKRFIRNF 184

Query: 182 SSIIVPLTKCLKKGNFKWIIQQQ 205
           SSI+ PLT CLKKGNFKW   QQ
Sbjct: 185 SSIVAPLTNCLKKGNFKWEHMQQ 203

[Close]

BLAST of Cmc09g0248241 vs. NCBI nr
Match: TYK16315.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 323.6 bits (828), Expect = 1.4e-84
Identity = 154/203 (75.86%), Postives = 176/203 (86.70%), Query Frame = 0


Query: 2   FPIPRIGDLLDQLGKATIFSKIDLRSGYHHIRIRPGDEWKTAFKTNEGLFEWMVMPFGLS 61
           FPIPRIGDLLDQLGKAT+FSKIDLR GYH IRIRPGDEWKTAF TNE LF+W+VMPFGLS
Sbjct: 5   FPIPRIGDLLDQLGKATVFSKIDLRIGYHQIRIRPGDEWKTAFNTNEELFKWLVMPFGLS 64

Query: 62  NAPSTFMRLMNQVLDPFLNKFLVVYFDDILIYSDGKDEHMLHLRKLFQVLTETELYINQK 121
           NAPSTFMRLMNQVL PFLN+F+VVYFDDIL+ S  +++H+ HLRKLFQVLTE ELYIN K
Sbjct: 65  NAPSTFMRLMNQVLYPFLNQFIVVYFDDILVCSSSREDHLQHLRKLFQVLTEIELYINPK 124

Query: 122 KCVFLKEKISFLGFIIKEEKISMELKKTEAIRTWPIPTSIKEIQAFLGLASFYRKFIKNF 181
           K  FL ++I FLGF+IKE KI +E KK EAI++WP+PT IKE+Q FLGLASFY++FI+NF
Sbjct: 125 KYTFLTKEIVFLGFLIKEGKIGIEPKKVEAIQSWPVPTFIKEVQGFLGLASFYKRFIRNF 184

Query: 182 SSIIVPLTKCLKKGNFKWIIQQQ 205
           SSI+ PLT  LKKGNFKW   QQ
Sbjct: 185 SSIVAPLTNYLKKGNFKWEHMQQ 207

[Close]

BLAST of Cmc09g0248241 vs. NCBI nr
Match: KAA0051933.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa] >TYK12229.1 putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 318.2 bits (814), Expect = 5.9e-83
Identity = 152/213 (71.36%), Postives = 180/213 (84.51%), Query Frame = 0


Query: 2   FPIPRIGDLLDQLGKATIFSKIDLRSGYHHIRIRPGDEWKTAFKTNEGLFEWMVMPFGLS 61
           FPIPRI DLLDQLG A IFSKIDLRSGY  IRIRPGDEWKTAFKTNEGLF+W+VMPFGLS
Sbjct: 17  FPIPRINDLLDQLGGALIFSKIDLRSGYLQIRIRPGDEWKTAFKTNEGLFKWLVMPFGLS 76

Query: 62  NAPSTFMRLMNQVLDPFLNKFLVVYFDDILIYSDGKDEHMLHLRKLFQVLTETELYINQK 121
           NAPSTFMRLMNQVL PFLNKF++VYFDDIL +S   DEH LHL++LF+ L + ELYIN K
Sbjct: 77  NAPSTFMRLMNQVLHPFLNKFVIVYFDDILDFSRTLDEHHLHLQQLFEALAKNELYINLK 136

Query: 122 KCVFLKEKISFLGFIIKEEKISMELKKTEAIRTWPIPTSIKEIQAFLGLASFYRKFIKNF 181
           KC+F  E+I+FLGFII++  I M+ KK EAI+ WPIPTS+KE+QAF+GLASFYRKFI NF
Sbjct: 137 KCIFCVEEIAFLGFIIRKNHILMDEKKVEAIKNWPIPTSVKEVQAFVGLASFYRKFIHNF 196

Query: 182 SSIIVPLTKCLKKGNFKWIIQQQESFDNIKKKL 215
            +I  P+  CLKKG+F W  ++Q+SF+ +K+KL
Sbjct: 197 ITIAAPIMDCLKKGSFLWGNKRQDSFELLKEKL 229

[Close]

BLAST of Cmc09g0248241 vs. NCBI nr
Match: TYK06567.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 313.9 bits (803), Expect = 1.1e-81
Identity = 153/213 (71.83%), Postives = 176/213 (82.63%), Query Frame = 0


Query: 2   FPIPRIGDLLDQLGKATIFSKIDLRSGYHHIRIRPGDEWKTAFKTNEGLFEWMVMPFGLS 61
           FP PRI +LLDQLG+A IFSKIDL+SGY  IRI+PGDEWKTAFKTNEGLFEW+VMPFGLS
Sbjct: 258 FPTPRINELLDQLGEAGIFSKIDLKSGYDQIRIKPGDEWKTAFKTNEGLFEWLVMPFGLS 317

Query: 62  NAPSTFMRLMNQVLDPFLNKFLVVYFDDILIYSDGKDEHMLHLRKLFQVLTETELYINQK 121
           NAPSTFMRLMNQVL  FLNKF+VVYFDDIL++S    EH  HL ++F+VL + ELYIN K
Sbjct: 318 NAPSTFMRLMNQVLHHFLNKFVVVYFDDILVFSRCLQEHNTHLYQVFEVLAKNELYINLK 377

Query: 122 KCVFLKEKISFLGFIIKEEKISMELKKTEAIRTWPIPTSIKEIQAFLGLASFYRKFIKNF 181
           KC F  E+I+FLGFIIK+  I M+ KK EAIR WPIP SIKE+QAFLGLASFYRKFI NF
Sbjct: 378 KCTFCVEEIAFLGFIIKKNHILMDEKKVEAIRNWPIPKSIKEVQAFLGLASFYRKFIYNF 437

Query: 182 SSIIVPLTKCLKKGNFKWIIQQQESFDNIKKKL 215
           S+I   +T CLKKG F W  +QQ+SF+ +KKKL
Sbjct: 438 STIAASITDCLKKGGFLWGKKQQDSFEALKKKL 470

[Close]

BLAST of Cmc09g0248241 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 2.6e-49
Identity = 100/217 (46.08%), Postives = 139/217 (64.06%), Query Frame = 0


Query: 3   PIPRIGDLLDQLGKATIFSKIDLRSGYHHIRIRPGDEWKTAFKTNEGLFEWMVMPFGLSN 62
           PIP + ++L +LG+   F+ IDL  G+H I + P    KTAF T  G +E++ MPFGL N
Sbjct: 281 PIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKN 340

Query: 63  APSTFMRLMNQVLDPFLNKFLVVYFDDILIYSDGKDEHMLHLRKLFQVLTETELYINQKK 122
           AP+TF R MN +L P LNK  +VY DDI+++S   DEH+  L  +F+ L +  L +   K
Sbjct: 341 APATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDK 400

Query: 123 CVFLKEKISFLGFIIKEEKISMELKKTEAIRTWPIPTSIKEIQAFLGLASFYRKFIKNFS 182
           C FLK++ +FLG ++  + I    +K EAI+ +PIPT  KEI+AFLGL  +YRKFI NF+
Sbjct: 401 CEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFA 460

Query: 183 SIIVPLTKCLKKGNFKWIIQQQESFDNIKKKLRAYIT 220
            I  P+TKCLKK N K I      +D+  KKL+  I+
Sbjct: 461 DIAKPMTKCLKK-NMK-IDTTNPEYDSAFKKLKYLIS 495

[Close]

BLAST of Cmc09g0248241 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 5.1e-45
Identity = 89/193 (46.11%), Postives = 124/193 (64.25%), Query Frame = 0


Query: 2   FPIPRIGDLLDQLGKATIFSKIDLRSGYHHIRIRPGDEWKTAFKTNEGLFEWMVMPFGLS 61
           +PIP + ++L +LGK   F+ IDL  G+H I +      KTAF T  G +E++ MPFGL 
Sbjct: 279 YPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLR 338

Query: 62  NAPSTFMRLMNQVLDPFLNKFLVVYFDDILIYSDGKDEHMLHLRKLFQVLTETELYINQK 121
           NAP+TF R MN +L P LNK  +VY DDI+I+S    EH+  ++ +F  L +  L +   
Sbjct: 339 NAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLD 398

Query: 122 KCVFLKEKISFLGFIIKEEKISMELKKTEAIRTWPIPTSIKEIQAFLGLASFYRKFIKNF 181
           KC FLK++ +FLG I+  + I     K +AI ++PIPT  KEI+AFLGL  +YRKFI N+
Sbjct: 399 KCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNY 458

Query: 182 SSIIVPLTKCLKK 195
           + I  P+T CLKK
Sbjct: 459 ADIAKPMTSCLKK 471

[Close]

BLAST of Cmc09g0248241 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 175.3 bits (443), Expect = 8.1e-43
Identity = 93/214 (43.46%), Postives = 133/214 (62.15%), Query Frame = 0


Query: 2   FPIPRIGDLLDQLGKATIFSKIDLRSGYHHIRIRPGDEWKTAFKTNEGLFEWMVMPFGLS 61
           FP+PRI +LL ++G A IF+ +DL SGYH I + P D +KTAF T  G +E+ VMPFGL 
Sbjct: 664 FPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLV 723

Query: 62  NAPSTFMRLMNQVLDPFLN-KFLVVYFDDILIYSDGKDEHMLHLRKLFQVLTETELYINQ 121
           NAPSTF R M    D F + +F+ VY DDILI+S+  +EH  HL  + + L    L + +
Sbjct: 724 NAPSTFARYM---ADTFRDLRFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKK 783

Query: 122 KKCVFLKEKISFLGFIIKEEKISMELKKTEAIRTWPIPTSIKEIQAFLGLASFYRKFIKN 181
           KKC F  E+  FLG+ I  +KI+    K  AIR +P P ++K+ Q FLG+ ++YR+FI N
Sbjct: 784 KKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPN 843

Query: 182 FSSIIVPLTKCLKKGNFKWIIQQQESFDNIKKKL 215
            S I  P+   +   + +W  +Q ++ D +K  L
Sbjct: 844 CSKIAQPIQLFICDKS-QWTEKQDKAIDKLKDAL 873

[Close]

BLAST of Cmc09g0248241 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 173.7 bits (439), Expect = 2.4e-42
Identity = 92/214 (42.99%), Postives = 133/214 (62.15%), Query Frame = 0


Query: 2   FPIPRIGDLLDQLGKATIFSKIDLRSGYHHIRIRPGDEWKTAFKTNEGLFEWMVMPFGLS 61
           FP+PRI +LL ++G A IF+ +DL SGYH I + P D +KTAF T  G +E+ VMPFGL 
Sbjct: 690 FPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLV 749

Query: 62  NAPSTFMRLMNQVLDPFLN-KFLVVYFDDILIYSDGKDEHMLHLRKLFQVLTETELYINQ 121
           NAPSTF R M    D F + +F+ VY DDILI+S+  +EH  HL  + + L    L + +
Sbjct: 750 NAPSTFARYM---ADTFRDLRFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKK 809

Query: 122 KKCVFLKEKISFLGFIIKEEKISMELKKTEAIRTWPIPTSIKEIQAFLGLASFYRKFIKN 181
           KKC F  E+  FLG+ I  +KI+    K  AIR +P P ++K+ Q FLG+ ++YR+FI N
Sbjct: 810 KKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPN 869

Query: 182 FSSIIVPLTKCLKKGNFKWIIQQQESFDNIKKKL 215
            S I  P+   +   + +W  +Q ++ + +K  L
Sbjct: 870 CSKIAQPIQLFICDKS-QWTEKQDKAIEKLKAAL 899

[Close]

BLAST of Cmc09g0248241 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 5.8e-41
Identity = 84/215 (39.07%), Postives = 131/215 (60.93%), Query Frame = 0


Query: 1   MFPIPRIGDLLDQLGKATIFSKIDLRSGYHHIRIRPGDEWKTAFKTNEGLFEWMVMPFGL 60
           ++P+P I  LL ++  +TIF+K+DL+S YH IR+R GDE K AF+   G+FE++VMP+G+
Sbjct: 479 IYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGI 538

Query: 61  SNAPSTFMRLMNQVLDPFLNKFLVVYFDDILIYSDGKDEHMLHLRKLFQVLTETELYINQ 120
           S AP+ F   +N +L       +V Y DDILI+S  + EH+ H++ + Q L    L INQ
Sbjct: 539 STAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQ 598

Query: 121 KKCVFLKEKISFLGFIIKEEKISMELKKTEAIRTWPIPTSIKEIQAFLGLASFYRKFIKN 180
            KC F + ++ F+G+ I E+  +   +  + +  W  P + KE++ FLG  ++ RKFI  
Sbjct: 599 AKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPK 658

Query: 181 FSSIIVPLTKCLKKG-NFKWIIQQQESFDNIKKKL 215
            S +  PL   LKK   +KW   Q ++ +NIK+ L
Sbjct: 659 TSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCL 693

[Close]

BLAST of Cmc09g0248241 vs. ExPASy TrEMBL
Match: A0A5D3DSW8 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G003420 PE=4 SV=1)

HSP 1 Score: 434.1 bits (1115), Expect = 3.6e-118
Identity = 214/216 (99.07%), Postives = 215/216 (99.54%), Query Frame = 0


Query: 12  DQLGKATIFSKIDLRSGYHHIRIRPGDEWKTAFKTNEGLFEWMVMPFGLSNAPSTFMRLM 71
           +QLGKATIFSKIDLRSGYHHIRIRPGDEWKTAFKTNEGLFEWMVMPFGLSNAPSTFMRLM
Sbjct: 109 NQLGKATIFSKIDLRSGYHHIRIRPGDEWKTAFKTNEGLFEWMVMPFGLSNAPSTFMRLM 168

Query: 72  NQVLDPFLNKFLVVYFDDILIYSDGKDEHMLHLRKLFQVLTETELYINQKKCVFLKEKIS 131
           NQVLDPFLNKFLVVYFDDILIYSDGKDEHMLHLRKLFQVLTETELYINQKKCVFLKEKIS
Sbjct: 169 NQVLDPFLNKFLVVYFDDILIYSDGKDEHMLHLRKLFQVLTETELYINQKKCVFLKEKIS 228

Query: 132 FLGFIIKEEKISMELKKTEAIRTWPIPTSIKEIQAFLGLASFYRKFIKNFSSIIVPLTKC 191
           FLGFIIKEEKISME KKTEAIRTWPIPTSIKEIQAFLGLASFYRKFIKNFSSIIVPLTKC
Sbjct: 229 FLGFIIKEEKISMEPKKTEAIRTWPIPTSIKEIQAFLGLASFYRKFIKNFSSIIVPLTKC 288

Query: 192 LKKGNFKWIIQQQESFDNIKKKLRAYITTSRLHFTF 228
           LKKGNFKWIIQQQESFDNIKKKLRAYITTSRLHFTF
Sbjct: 289 LKKGNFKWIIQQQESFDNIKKKLRAYITTSRLHFTF 324

[Close]

BLAST of Cmc09g0248241 vs. ExPASy TrEMBL
Match: A0A5A7V4Q2 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G001450 PE=4 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 4.0e-85
Identity = 154/203 (75.86%), Postives = 176/203 (86.70%), Query Frame = 0


Query: 2   FPIPRIGDLLDQLGKATIFSKIDLRSGYHHIRIRPGDEWKTAFKTNEGLFEWMVMPFGLS 61
           FPIPRIGDLLDQLGKAT+FSKIDLR GYH    RPGDEWKTAF TNE LF+W+VMPFGLS
Sbjct: 5   FPIPRIGDLLDQLGKATVFSKIDLRIGYH----RPGDEWKTAFNTNEELFKWLVMPFGLS 64

Query: 62  NAPSTFMRLMNQVLDPFLNKFLVVYFDDILIYSDGKDEHMLHLRKLFQVLTETELYINQK 121
           NAPSTFMRLMNQVL PFLN+F+VVYFDDIL+YS  +++H+ HLRKLFQVLTE ELYIN K
Sbjct: 65  NAPSTFMRLMNQVLYPFLNQFIVVYFDDILVYSSSREDHLQHLRKLFQVLTEIELYINPK 124

Query: 122 KCVFLKEKISFLGFIIKEEKISMELKKTEAIRTWPIPTSIKEIQAFLGLASFYRKFIKNF 181
           KC FL ++I FLGF+IKE KI +E KK EAI++WP+PT IKE+Q FLGLASFY++FI+NF
Sbjct: 125 KCTFLTKEIVFLGFLIKEGKIGIEPKKVEAIQSWPVPTFIKEVQGFLGLASFYKRFIRNF 184

Query: 182 SSIIVPLTKCLKKGNFKWIIQQQ 205
           SSI+ PLT CLKKGNFKW   QQ
Sbjct: 185 SSIVAPLTNCLKKGNFKWEHMQQ 203

[Close]

BLAST of Cmc09g0248241 vs. ExPASy TrEMBL
Match: A0A5D3CXW2 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G00920 PE=4 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 6.8e-85
Identity = 154/203 (75.86%), Postives = 176/203 (86.70%), Query Frame = 0


Query: 2   FPIPRIGDLLDQLGKATIFSKIDLRSGYHHIRIRPGDEWKTAFKTNEGLFEWMVMPFGLS 61
           FPIPRIGDLLDQLGKAT+FSKIDLR GYH IRIRPGDEWKTAF TNE LF+W+VMPFGLS
Sbjct: 5   FPIPRIGDLLDQLGKATVFSKIDLRIGYHQIRIRPGDEWKTAFNTNEELFKWLVMPFGLS 64

Query: 62  NAPSTFMRLMNQVLDPFLNKFLVVYFDDILIYSDGKDEHMLHLRKLFQVLTETELYINQK 121
           NAPSTFMRLMNQVL PFLN+F+VVYFDDIL+ S  +++H+ HLRKLFQVLTE ELYIN K
Sbjct: 65  NAPSTFMRLMNQVLYPFLNQFIVVYFDDILVCSSSREDHLQHLRKLFQVLTEIELYINPK 124

Query: 122 KCVFLKEKISFLGFIIKEEKISMELKKTEAIRTWPIPTSIKEIQAFLGLASFYRKFIKNF 181
           K  FL ++I FLGF+IKE KI +E KK EAI++WP+PT IKE+Q FLGLASFY++FI+NF
Sbjct: 125 KYTFLTKEIVFLGFLIKEGKIGIEPKKVEAIQSWPVPTFIKEVQGFLGLASFYKRFIRNF 184

Query: 182 SSIIVPLTKCLKKGNFKWIIQQQ 205
           SSI+ PLT  LKKGNFKW   QQ
Sbjct: 185 SSIVAPLTNYLKKGNFKWEHMQQ 207

[Close]

BLAST of Cmc09g0248241 vs. ExPASy TrEMBL
Match: A0A5D3CPI6 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold769G00330 PE=4 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 2.9e-83
Identity = 152/213 (71.36%), Postives = 180/213 (84.51%), Query Frame = 0


Query: 2   FPIPRIGDLLDQLGKATIFSKIDLRSGYHHIRIRPGDEWKTAFKTNEGLFEWMVMPFGLS 61
           FPIPRI DLLDQLG A IFSKIDLRSGY  IRIRPGDEWKTAFKTNEGLF+W+VMPFGLS
Sbjct: 17  FPIPRINDLLDQLGGALIFSKIDLRSGYLQIRIRPGDEWKTAFKTNEGLFKWLVMPFGLS 76

Query: 62  NAPSTFMRLMNQVLDPFLNKFLVVYFDDILIYSDGKDEHMLHLRKLFQVLTETELYINQK 121
           NAPSTFMRLMNQVL PFLNKF++VYFDDIL +S   DEH LHL++LF+ L + ELYIN K
Sbjct: 77  NAPSTFMRLMNQVLHPFLNKFVIVYFDDILDFSRTLDEHHLHLQQLFEALAKNELYINLK 136

Query: 122 KCVFLKEKISFLGFIIKEEKISMELKKTEAIRTWPIPTSIKEIQAFLGLASFYRKFIKNF 181
           KC+F  E+I+FLGFII++  I M+ KK EAI+ WPIPTS+KE+QAF+GLASFYRKFI NF
Sbjct: 137 KCIFCVEEIAFLGFIIRKNHILMDEKKVEAIKNWPIPTSVKEVQAFVGLASFYRKFIHNF 196

Query: 182 SSIIVPLTKCLKKGNFKWIIQQQESFDNIKKKL 215
            +I  P+  CLKKG+F W  ++Q+SF+ +K+KL
Sbjct: 197 ITIAAPIMDCLKKGSFLWGNKRQDSFELLKEKL 229

[Close]

BLAST of Cmc09g0248241 vs. ExPASy TrEMBL
Match: A0A5D3C402 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G00280 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 5.4e-82
Identity = 153/213 (71.83%), Postives = 176/213 (82.63%), Query Frame = 0


Query: 2   FPIPRIGDLLDQLGKATIFSKIDLRSGYHHIRIRPGDEWKTAFKTNEGLFEWMVMPFGLS 61
           FP PRI +LLDQLG+A IFSKIDL+SGY  IRI+PGDEWKTAFKTNEGLFEW+VMPFGLS
Sbjct: 258 FPTPRINELLDQLGEAGIFSKIDLKSGYDQIRIKPGDEWKTAFKTNEGLFEWLVMPFGLS 317

Query: 62  NAPSTFMRLMNQVLDPFLNKFLVVYFDDILIYSDGKDEHMLHLRKLFQVLTETELYINQK 121
           NAPSTFMRLMNQVL  FLNKF+VVYFDDIL++S    EH  HL ++F+VL + ELYIN K
Sbjct: 318 NAPSTFMRLMNQVLHHFLNKFVVVYFDDILVFSRCLQEHNTHLYQVFEVLAKNELYINLK 377

Query: 122 KCVFLKEKISFLGFIIKEEKISMELKKTEAIRTWPIPTSIKEIQAFLGLASFYRKFIKNF 181
           KC F  E+I+FLGFIIK+  I M+ KK EAIR WPIP SIKE+QAFLGLASFYRKFI NF
Sbjct: 378 KCTFCVEEIAFLGFIIKKNHILMDEKKVEAIRNWPIPKSIKEVQAFLGLASFYRKFIYNF 437

Query: 182 SSIIVPLTKCLKKGNFKWIIQQQESFDNIKKKL 215
           S+I   +T CLKKG F W  +QQ+SF+ +KKKL
Sbjct: 438 STIAASITDCLKKGGFLWGKKQQDSFEALKKKL 470

[Close]

BLAST of Cmc09g0248241 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 88.2 bits (217), Expect = 9.3e-18
Identity = 47/122 (38.52%), Postives = 72/122 (59.02%), Query Frame = 0


Query: 101 MLHLRKLFQVLTETELYINQKKCVFLKEKISFLG--FIIKEEKISMELKKTEAIRTWPIP 160
           M HL  + Q+  + + Y N+KKC F + +I++LG   II  E +S +  K EA+  WP P
Sbjct: 1   MNHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEP 60

Query: 161 TSIKEIQAFLGLASFYRKFIKNFSSIIVPLTKCLKKGNFKWIIQQQESFDNIKKKLRAYI 220
            +  E++ FLGL  +YR+F+KN+  I+ PLT+ LKK + KW      +F    K L+  +
Sbjct: 61  KNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAF----KALKGAV 118

The following BLAST results are available for this feature:

BLAST of Cmc09g0248241 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK26683.1	7.4e-118	99.07	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0063033.1	8.2e-85	75.86	Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw...	[more]
TYK16315.1	1.4e-84	75.86	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0051933.1	5.9e-83	71.36	putative gag-pol polyprotein [Cucumis melo var. makuwa] >TYK12229.1 putative gag...	[more]
TYK06567.1	1.1e-81	71.83	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc09g0248241 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	2.6e-49	46.08	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	5.1e-45	46.11	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
Q99315	8.1e-43	43.46	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	2.4e-42	42.99	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P0CT41	5.8e-41	39.07	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of Cmc09g0248241 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DSW8	3.6e-118	99.07	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7V4Q2	4.0e-85	75.86	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak...	[more]
A0A5D3CXW2	6.8e-85	75.86	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3CPI6	2.9e-83	71.36	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5D3C402	5.4e-82	71.83	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of Cmc09g0248241 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	9.3e-18	38.52	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 146..225 e-value: 3.4E-24 score: 86.7
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 2..137 e-value: 3.7E-55 score: 188.5
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 10..137 e-value: 1.6E-29 score: 103.0
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..137 score: 16.39875
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 30..62 e-value: 3.7E-55 score: 188.5
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 2..214
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..214
None	No IPR available	CDD	cd01647	RT_LTR	coord: 2..137 e-value: 9.91491E-66 score: 199.359
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..218

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc09g0248241.1	Cmc09g0248241.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding