Cmc09g0247171 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc09g0247171
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr09: 11551955 .. 11553199 (-)
RNA-Seq Expression	Cmc09g0247171
Synteny	Cmc09g0247171

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTTTGGGTTGACTAATGCTCCTACGGTATTCATGGACTTGATGAACAGGGTGTTCAAAGATTTCTTAGACACGTTTGTCATAGTTTTCATTGATGACATCTTGATCTGCTCCAAGATCAAGGCTGAGCATGAGAAGCACTTGCACCGGGTTTTGGAGACTCTTCGAGCCAATAAGTTGTATGCCAAGTTCTCCAACTGTGAGTTCTGGCTGAAGAAGGTATCTTTCCTTGGACATGTGGTGTCCAGTGAGGGAGTTTCTATAGACCCAGCAAAGGTTGAAACTATTACTAGTTGGCCTCGACCGTCGACAGTTAGCGAGATTCGTAGTTTCCTGGGTTTGGTAGGTTACTACAGGAGGTTCGTGGAAGACTTCTCTCGTATAGCCAGTCCCTTGATTCAGTTGACCAGGAAGGGGACCCCTTTTGTTTGGAGCCCAGCTTGCGAGAGTAGCTTCCAGGAACTTAAGCAGAAGCTTGTGTCTGCACCAGTCCTGACAGTGCCAGATGGATCGGGGAGCTTTGTGATCTACAGTGATTCCTCCAAGAAAGGACTGGGTTGCGTGCTGATGCAGCAGGGCAGAGTAGTTGCTTATGCCTCCCGCCAGTTGAAGAGTCACGAGCAGAACTATCATACCCATGACCTAGAGTTGGCAGCAGTGGTTTTTGCACTGAAAATATGGAGACATTACCTGTACGGTGAGAAGATACAGATTTTCACTGACCATAAGAGCCTGAAATACTTCTTCACCCAGAAGGAGTTGAACATGAGGCAGAGGAGGTGGCTCGAGTTAGTGAAAAACTATGACTGCGAGATTTTGTATGACCCAGGTAAGGCAAACGTAGTAGCTAACGCATTGAGTAGGAAGGTTGCGCATTCCGCAGCGCTTATCACCAAGCAAGCTCCCTTACTAAGAGATCTCGAGAGAGCTGAGATTGCAGTCTCAATAGAAGAAGTGACCTCACAGTTTGCCCAGTTGATCGTGCAGCCGACCTTGAGACAGAGGATTATTGTTGCTCAGCTAAATGATCCTTACTTGGTCGAGAAGCGTCTATTAGTAGAGGCAGGGCAAAGTGAGGATTTCTCCATATCCTCTGATGACAGACTTACCTTCGATGGACGTTTGAGCGTGCCAGAAGACAGTGCAGTCAAGGAAGAGCTTTTGAAGGAGGCTCACAGTTCTCCATTTGCTATGCACCCTGGAAGTACGAAGATGTACCAAGACTTGAGGTGTGTCTACTGA

mRNA sequence

ATGTCTTTTGGGTTGACTAATGCTCCTACGGTATTCATGGACTTGATGAACAGGGTGTTCAAAGATTTCTTAGACACGTTTGTCATAGTTTTCATTGATGACATCTTGATCTGCTCCAAGATCAAGGCTGAGCATGAGAAGCACTTGCACCGGGTTTTGGAGACTCTTCGAGCCAATAAGTTGTATGCCAAGTTCTCCAACTGTGAGTTCTGGCTGAAGAAGGTATCTTTCCTTGGACATGTGGTGTCCAGTGAGGGAGTTTCTATAGACCCAGCAAAGGTTGAAACTATTACTAGTTGGCCTCGACCGTCGACAGTTAGCGAGATTCGTAGTTTCCTGGGTTTGGTAGGTTACTACAGGAGGTTCGTGGAAGACTTCTCTCGTATAGCCAGTCCCTTGATTCAGTTGACCAGGAAGGGGACCCCTTTTGTTTGGAGCCCAGCTTGCGAGAGTAGCTTCCAGGAACTTAAGCAGAAGCTTGTGTCTGCACCAGTCCTGACAGTGCCAGATGGATCGGGGAGCTTTGTGATCTACAGTGATTCCTCCAAGAAAGGACTGGGTTGCGTGCTGATGCAGCAGGGCAGAGTAGTTGCTTATGCCTCCCGCCAGTTGAAGAGTCACGAGCAGAACTATCATACCCATGACCTAGAGTTGGCAGCAGTGGTTTTTGCACTGAAAATATGGAGACATTACCTGTACGGTGAGAAGATACAGATTTTCACTGACCATAAGAGCCTGAAATACTTCTTCACCCAGAAGGAGTTGAACATGAGGCAGAGGAGGTGGCTCGAGTTAGTGAAAAACTATGACTGCGAGATTTTGTATGACCCAGGTAAGGCAAACGTAGTAGCTAACGCATTGAGTAGGAAGGTTGCGCATTCCGCAGCGCTTATCACCAAGCAAGCTCCCTTACTAAGAGATCTCGAGAGAGCTGAGATTGCAGTCTCAATAGAAGAAGTGACCTCACAGTTTGCCCAGTTGATCGTGCAGCCGACCTTGAGACAGAGGATTATTGTTGCTCAGCTAAATGATCCTTACTTGGTCGAGAAGCGTCTATTAGTAGAGGCAGGGCAAAGTGAGGATTTCTCCATATCCTCTGATGACAGACTTACCTTCGATGGACGTTTGAGCGTGCCAGAAGACAGTGCAGTCAAGGAAGAGCTTTTGAAGGAGGCTCACAGTTCTCCATTTGCTATGCACCCTGGAAGTACGAAGATGTACCAAGACTTGAGGTGTGTCTACTGA

Coding sequence (CDS)

ATGTCTTTTGGGTTGACTAATGCTCCTACGGTATTCATGGACTTGATGAACAGGGTGTTCAAAGATTTCTTAGACACGTTTGTCATAGTTTTCATTGATGACATCTTGATCTGCTCCAAGATCAAGGCTGAGCATGAGAAGCACTTGCACCGGGTTTTGGAGACTCTTCGAGCCAATAAGTTGTATGCCAAGTTCTCCAACTGTGAGTTCTGGCTGAAGAAGGTATCTTTCCTTGGACATGTGGTGTCCAGTGAGGGAGTTTCTATAGACCCAGCAAAGGTTGAAACTATTACTAGTTGGCCTCGACCGTCGACAGTTAGCGAGATTCGTAGTTTCCTGGGTTTGGTAGGTTACTACAGGAGGTTCGTGGAAGACTTCTCTCGTATAGCCAGTCCCTTGATTCAGTTGACCAGGAAGGGGACCCCTTTTGTTTGGAGCCCAGCTTGCGAGAGTAGCTTCCAGGAACTTAAGCAGAAGCTTGTGTCTGCACCAGTCCTGACAGTGCCAGATGGATCGGGGAGCTTTGTGATCTACAGTGATTCCTCCAAGAAAGGACTGGGTTGCGTGCTGATGCAGCAGGGCAGAGTAGTTGCTTATGCCTCCCGCCAGTTGAAGAGTCACGAGCAGAACTATCATACCCATGACCTAGAGTTGGCAGCAGTGGTTTTTGCACTGAAAATATGGAGACATTACCTGTACGGTGAGAAGATACAGATTTTCACTGACCATAAGAGCCTGAAATACTTCTTCACCCAGAAGGAGTTGAACATGAGGCAGAGGAGGTGGCTCGAGTTAGTGAAAAACTATGACTGCGAGATTTTGTATGACCCAGGTAAGGCAAACGTAGTAGCTAACGCATTGAGTAGGAAGGTTGCGCATTCCGCAGCGCTTATCACCAAGCAAGCTCCCTTACTAAGAGATCTCGAGAGAGCTGAGATTGCAGTCTCAATAGAAGAAGTGACCTCACAGTTTGCCCAGTTGATCGTGCAGCCGACCTTGAGACAGAGGATTATTGTTGCTCAGCTAAATGATCCTTACTTGGTCGAGAAGCGTCTATTAGTAGAGGCAGGGCAAAGTGAGGATTTCTCCATATCCTCTGATGACAGACTTACCTTCGATGGACGTTTGAGCGTGCCAGAAGACAGTGCAGTCAAGGAAGAGCTTTTGAAGGAGGCTCACAGTTCTCCATTTGCTATGCACCCTGGAAGTACGAAGATGTACCAAGACTTGAGGTGTGTCTACTGA

Protein sequence

MSFGLTNAPTVFMDLMNRVFKDFLDTFVIVFIDDILICSKIKAEHEKHLHRVLETLRANKLYAKFSNCEFWLKKVSFLGHVVSSEGVSIDPAKVETITSWPRPSTVSEIRSFLGLVGYYRRFVEDFSRIASPLIQLTRKGTPFVWSPACESSFQELKQKLVSAPVLTVPDGSGSFVIYSDSSKKGLGCVLMQQGRVVAYASRQLKSHEQNYHTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKNYDCEILYDPGKANVVANALSRKVAHSAALITKQAPLLRDLERAEIAVSIEEVTSQFAQLIVQPTLRQRIIVAQLNDPYLVEKRLLVEAGQSEDFSISSDDRLTFDGRLSVPEDSAVKEELLKEAHSSPFAMHPGSTKMYQDLRCVY

Homology

[Close]

BLAST of Cmc09g0247171 vs. NCBI nr
Match: KAA0035890.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 731.5 bits (1887), Expect = 4.1e-207
Identity = 365/414 (88.16%), Postives = 387/414 (93.48%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMDLMNRVFKDFLDTFVIVFIDDILICSKIKAEHEKHLHRVLETLRANK 60
           MSFGLTNAP V MDLMNRVFKDFLD+FVIVFIDDILI SKI+AEHE+HLH+VLETLRANK
Sbjct: 251 MSFGLTNAPAVIMDLMNRVFKDFLDSFVIVFIDDILIYSKIEAEHEEHLHQVLETLRANK 310

Query: 61  LYAKFSNCEFWLKKVSFLGHVVSSEGVSIDPAKVETITSWPRPSTVSEIRSFLGLVGYYR 120
           LYAKFS CEFWL+KV+FLGHVVSSEGVS+DPAK+E +T+WPRPSTVSEIRSFLGL GYYR
Sbjct: 311 LYAKFSKCEFWLRKVAFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 370

Query: 121 RFVEDFSRIASPLIQLTRKGTPFVWSPACESSFQELKQKLVSAPVLTVPDGSGSFVIYSD 180
           RFVEDFSRIASPL QLTRKGTPFVWSPACESSFQELKQKLV+APVLTVPDGSG+FVIYSD
Sbjct: 371 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGNFVIYSD 430

Query: 181 SSKKGLGCVLMQQGRVVAYASRQLKSHEQNYHTHDLELAAVVFALKIWRHYLYGEKIQIF 240
           +SKKGLGCVLMQQG+VVAYASRQLK HEQNY THDLELAAVVFALKIWRHYLYGEKIQI+
Sbjct: 431 ASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIY 490

Query: 241 TDHKSLKYFFTQKELNMRQRRWLELVKNYDCEILYDPGKANVVANALSRKVAHSAALITK 300
           TDHKSLKYFFTQKELNMRQRRWLELVK+YDCEILY PGKANVVA+ALSRKVAHSAALITK
Sbjct: 491 TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK 550

Query: 301 QAPLLRDLERAEIAVSIEEVTSQFAQLIVQPTLRQRIIVAQLNDPYLVEKRLLVEAGQSE 360
           Q PLLRD ERAEIAVS+ EVT+Q AQL VQPTLRQ+II AQLNDPYL EKR +VE GQ E
Sbjct: 551 QTPLLRDFERAEIAVSVGEVTAQLAQLSVQPTLRQKIIAAQLNDPYLAEKRRMVETGQGE 610

Query: 361 DFSISSDDRLTFDGRLSVPEDSAVKEELLKEAHSSPFAMHPGSTKMYQDLRCVY 415
           DFSISSDD L F+GRL VPEDSAVK ELL EAHSSPF MHPGSTKMYQDLR VY
Sbjct: 611 DFSISSDDGLMFEGRLCVPEDSAVKMELLTEAHSSPFTMHPGSTKMYQDLRSVY 664

[Close]

BLAST of Cmc09g0247171 vs. NCBI nr
Match: KAA0066951.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 730.3 bits (1884), Expect = 9.1e-207
Identity = 364/414 (87.92%), Postives = 387/414 (93.48%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMDLMNRVFKDFLDTFVIVFIDDILICSKIKAEHEKHLHRVLETLRANK 60
           MSFGLTNAP VFMDLMNRVFKDFLD+FVIVFIDDILI SK +AEHE+HLH+VLETLRANK
Sbjct: 521 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 580

Query: 61  LYAKFSNCEFWLKKVSFLGHVVSSEGVSIDPAKVETITSWPRPSTVSEIRSFLGLVGYYR 120
           LYAKFS CEFWL+KV+FLGHVVSSEGVS+DPAK+E +T+WPRPSTVSEIRSFLGL GYYR
Sbjct: 581 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 640

Query: 121 RFVEDFSRIASPLIQLTRKGTPFVWSPACESSFQELKQKLVSAPVLTVPDGSGSFVIYSD 180
           RFVEDFSRIASPL QLTRKGTPFVWSPACESSFQELKQKLV+APVLTVPDGSG+FVIYSD
Sbjct: 641 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGNFVIYSD 700

Query: 181 SSKKGLGCVLMQQGRVVAYASRQLKSHEQNYHTHDLELAAVVFALKIWRHYLYGEKIQIF 240
           +SKKGLGCVLMQQG+VVAYASRQLK HEQNY THDLELAAVVFALKIWRHYLYGEKIQI+
Sbjct: 701 ASKKGLGCVLMQQGKVVAYASRQLKVHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIY 760

Query: 241 TDHKSLKYFFTQKELNMRQRRWLELVKNYDCEILYDPGKANVVANALSRKVAHSAALITK 300
           TDHKSLKYFFTQKELNMRQRRWLELVK+YDCEILY PGKANVVA+ALSRKVAHSAALITK
Sbjct: 761 TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK 820

Query: 301 QAPLLRDLERAEIAVSIEEVTSQFAQLIVQPTLRQRIIVAQLNDPYLVEKRLLVEAGQSE 360
           Q PLLRD ERAEIAVS+ EVT+Q AQL VQPTLRQ+II AQLNDPYLVEKR +VE GQ E
Sbjct: 821 QTPLLRDFERAEIAVSVGEVTAQLAQLSVQPTLRQKIIAAQLNDPYLVEKRRMVETGQGE 880

Query: 361 DFSISSDDRLTFDGRLSVPEDSAVKEELLKEAHSSPFAMHPGSTKMYQDLRCVY 415
           DFSIS DD L F+GRL VPEDSAV+ ELL EAHSSPF MHPGSTKMYQDLR VY
Sbjct: 881 DFSISFDDGLMFEGRLCVPEDSAVRTELLTEAHSSPFTMHPGSTKMYQDLRSVY 934

[Close]

BLAST of Cmc09g0247171 vs. NCBI nr
Match: TYK08868.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 727.2 bits (1876), Expect = 7.7e-206
Identity = 365/414 (88.16%), Postives = 385/414 (93.00%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMDLMNRVFKDFLDTFVIVFIDDILICSKIKAEHEKHLHRVLETLRANK 60
           MSFGLTNAP VFMDLMNRVFKDFLD+FVIVFIDDILI SK +AEHE+HLH+VLETLRANK
Sbjct: 73  MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 132

Query: 61  LYAKFSNCEFWLKKVSFLGHVVSSEGVSIDPAKVETITSWPRPSTVSEIRSFLGLVGYYR 120
           LYAKFS CEFWLKKV+FLGHVVSSEGVS+D AK+E +T+WPRPSTV+EIRSFLGL GYYR
Sbjct: 133 LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDLAKIEAVTNWPRPSTVNEIRSFLGLAGYYR 192

Query: 121 RFVEDFSRIASPLIQLTRKGTPFVWSPACESSFQELKQKLVSAPVLTVPDGSGSFVIYSD 180
           RFVEDFSRIASPL QLTRKGTPFVWSP CESSF ELKQKLV+APVLTVPDGSGSFVIYSD
Sbjct: 193 RFVEDFSRIASPLTQLTRKGTPFVWSPTCESSFLELKQKLVTAPVLTVPDGSGSFVIYSD 252

Query: 181 SSKKGLGCVLMQQGRVVAYASRQLKSHEQNYHTHDLELAAVVFALKIWRHYLYGEKIQIF 240
            SKKGLGCVLMQQG+VVAYASRQLKSHEQNY THDLELAAVVF LKIWRHYLYGE+IQI+
Sbjct: 253 GSKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFTLKIWRHYLYGERIQIY 312

Query: 241 TDHKSLKYFFTQKELNMRQRRWLELVKNYDCEILYDPGKANVVANALSRKVAHSAALITK 300
           TDHKSLKYFFTQKELNMRQRRWLELVK+YDCEILY PGKANVVA+ALSRKVAHSAALITK
Sbjct: 313 TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK 372

Query: 301 QAPLLRDLERAEIAVSIEEVTSQFAQLIVQPTLRQRIIVAQLNDPYLVEKRLLVEAGQSE 360
           Q PLLRD ERAEIAVS+ EVTSQ AQL+VQPTLRQRIIVAQLNDPYLVEKR LVE  Q E
Sbjct: 373 QTPLLRDFERAEIAVSVGEVTSQLAQLLVQPTLRQRIIVAQLNDPYLVEKRRLVETEQGE 432

Query: 361 DFSISSDDRLTFDGRLSVPEDSAVKEELLKEAHSSPFAMHPGSTKMYQDLRCVY 415
           DFSISS+D L F+GRL VPEDSAVK ELL EAHSSPF MHPGSTKMYQDLR VY
Sbjct: 433 DFSISSNDGLMFEGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRSVY 486

[Close]

BLAST of Cmc09g0247171 vs. NCBI nr
Match: KAA0063098.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 726.9 bits (1875), Expect = 1.0e-205
Identity = 362/414 (87.44%), Postives = 385/414 (93.00%), Query Frame = 0


Query: 1    MSFGLTNAPTVFMDLMNRVFKDFLDTFVIVFIDDILICSKIKAEHEKHLHRVLETLRANK 60
            MSFGLTNAP VFMDLMNRVFKDFLD+FVIVFIDDILI SK +AEHE+HLH+VLETLRANK
Sbjct: 713  MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 772

Query: 61   LYAKFSNCEFWLKKVSFLGHVVSSEGVSIDPAKVETITSWPRPSTVSEIRSFLGLVGYYR 120
            LYAKFS CEFWL+KV+FLGHVVSSEGVS+DPAK+E +T+WPRPSTVSEIRSFLGL GYYR
Sbjct: 773  LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 832

Query: 121  RFVEDFSRIASPLIQLTRKGTPFVWSPACESSFQELKQKLVSAPVLTVPDGSGSFVIYSD 180
            RFVEDFSRIASPL QLTRKGTPFVWSPACE SFQELKQKLV+APVLTVPDGSG+FVIYSD
Sbjct: 833  RFVEDFSRIASPLTQLTRKGTPFVWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSD 892

Query: 181  SSKKGLGCVLMQQGRVVAYASRQLKSHEQNYHTHDLELAAVVFALKIWRHYLYGEKIQIF 240
            +SKK LGCVLMQQG+VVAYASRQLK+HEQNY THDLELAAVVFALKIWRHYLYGEKIQI+
Sbjct: 893  ASKKELGCVLMQQGKVVAYASRQLKTHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIY 952

Query: 241  TDHKSLKYFFTQKELNMRQRRWLELVKNYDCEILYDPGKANVVANALSRKVAHSAALITK 300
            TDHKSLKYFFTQKELNMRQRRWLELVK+YDCEILY PGKANVVA+ALSRKVAHSAALITK
Sbjct: 953  TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK 1012

Query: 301  QAPLLRDLERAEIAVSIEEVTSQFAQLIVQPTLRQRIIVAQLNDPYLVEKRLLVEAGQSE 360
            Q PLLRD ERAEI VS+ EVT+Q AQL VQPTLRQ+II AQLNDPYL EKR +VE GQ E
Sbjct: 1013 QTPLLRDFERAEITVSVGEVTAQLAQLSVQPTLRQKIIAAQLNDPYLAEKRRMVETGQGE 1072

Query: 361  DFSISSDDRLTFDGRLSVPEDSAVKEELLKEAHSSPFAMHPGSTKMYQDLRCVY 415
            DFSISSDD L F+GRL VPEDSAVK ELL EAHSSPF MHPGSTKMYQDLR VY
Sbjct: 1073 DFSISSDDGLMFEGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRSVY 1126

[Close]

BLAST of Cmc09g0247171 vs. NCBI nr
Match: KAA0063793.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 726.1 bits (1873), Expect = 1.7e-205
Identity = 362/414 (87.44%), Postives = 385/414 (93.00%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMDLMNRVFKDFLDTFVIVFIDDILICSKIKAEHEKHLHRVLETLRANK 60
           MSFGLTNAP VFMDLMNRVFKDFLD+FVIVFIDDILI SK +AEHE+HLH+VLETLRANK
Sbjct: 251 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 310

Query: 61  LYAKFSNCEFWLKKVSFLGHVVSSEGVSIDPAKVETITSWPRPSTVSEIRSFLGLVGYYR 120
           LYAKFS CEFWL+KV+FLGHVVSSEGVS+DPAK+E +T+WPRPSTVSEIRSFLGL GYYR
Sbjct: 311 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 370

Query: 121 RFVEDFSRIASPLIQLTRKGTPFVWSPACESSFQELKQKLVSAPVLTVPDGSGSFVIYSD 180
           RFVEDFSRIASPL QLTRKGTPFVWSPACE SFQELKQKLV+APVLTVPDGSG+FVIYSD
Sbjct: 371 RFVEDFSRIASPLTQLTRKGTPFVWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSD 430

Query: 181 SSKKGLGCVLMQQGRVVAYASRQLKSHEQNYHTHDLELAAVVFALKIWRHYLYGEKIQIF 240
           +SKKGLGCVLMQQG+VVAYASRQLK HEQNY THDLELAAVVFALKIWRHYLYGEKIQI+
Sbjct: 431 ASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIY 490

Query: 241 TDHKSLKYFFTQKELNMRQRRWLELVKNYDCEILYDPGKANVVANALSRKVAHSAALITK 300
           TDHKSLKYFFTQKELNMRQRRWLELVK+YDCEILY PGKANVVA+ALSRKVAHSAALITK
Sbjct: 491 TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK 550

Query: 301 QAPLLRDLERAEIAVSIEEVTSQFAQLIVQPTLRQRIIVAQLNDPYLVEKRLLVEAGQSE 360
           Q PLLRD ERAEIAVS+ EVT+Q AQL VQPTLRQ+II AQLNDPYL EKR +VE  Q E
Sbjct: 551 QTPLLRDFERAEIAVSVGEVTAQLAQLTVQPTLRQKIIAAQLNDPYLAEKRRVVETEQGE 610

Query: 361 DFSISSDDRLTFDGRLSVPEDSAVKEELLKEAHSSPFAMHPGSTKMYQDLRCVY 415
           DFSISSDD L F+GRL VPED+AVK ELL EAHSSPF MHPGSTKMYQDLR VY
Sbjct: 611 DFSISSDDGLMFEGRLCVPEDNAVKTELLTEAHSSPFTMHPGSTKMYQDLRSVY 664

[Close]

BLAST of Cmc09g0247171 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 2.4e-56
Identity = 113/290 (38.97%), Postives = 171/290 (58.97%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMDLMNRVFKDFLDTFVIVFIDDILICSKIKAEHEKHLHRVLETLRANK 60
           M FGL NAP  F   MN + +  L+   +V++DDI++ S    EH + L  V E L    
Sbjct: 334 MPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKAN 393

Query: 61  LYAKFSNCEFWLKKVSFLGHVVSSEGVSIDPAKVETITSWPRPSTVSEIRSFLGLVGYYR 120
           L  +   CEF  ++ +FLGHV++ +G+  +P K+E I  +P P+   EI++FLGL GYYR
Sbjct: 394 LKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYR 453

Query: 121 RFVEDFSRIASPLIQLTRKGTPF-VWSPACESSFQELKQKLVSAPVLTVPDGSGSFVIYS 180
           +F+ +F+ IA P+ +  +K       +P  +S+F++LK  +   P+L VPD +  F + +
Sbjct: 454 KFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTT 513

Query: 181 DSSKKGLGCVLMQQGRVVAYASRQLKSHEQNYHTHDLELAAVVFALKIWRHYLYGEKIQI 240
           D+S   LG VL Q G  ++Y SR L  HE NY T + EL A+V+A K +RHYL G   +I
Sbjct: 514 DASDVALGAVLSQDGHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEI 573

Query: 241 FTDHKSLKYFFTQKELNMRQRRWLELVKNYDCEILYDPGKANVVANALSR 290
            +DH+ L + +  K+ N +  RW   +  +D +I Y  GK N VA+ALSR
Sbjct: 574 SSDHQPLSWLYRMKDPNSKLTRWRVKLSEFDFDIKYIKGKENCVADALSR 623

[Close]

BLAST of Cmc09g0247171 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 2.4e-53
Identity = 111/290 (38.28%), Postives = 164/290 (56.55%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMDLMNRVFKDFLDTFVIVFIDDILICSKIKAEHEKHLHRVLETLRANK 60
           M FGL NAP  F   MN + +  L+   +V++DDI+I S    EH   +  V   L    
Sbjct: 333 MPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADAN 392

Query: 61  LYAKFSNCEFWLKKVSFLGHVVSSEGVSIDPAKVETITSWPRPSTVSEIRSFLGLVGYYR 120
           L  +   CEF  K+ +FLGH+V+ +G+  +P KV+ I S+P P+   EIR+FLGL GYYR
Sbjct: 393 LKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYR 452

Query: 121 RFVEDFSRIASPLIQLTRKGTPF-VWSPACESSFQELKQKLVSAPVLTVPDGSGSFVIYS 180
           +F+ +++ IA P+    +K T           +F++LK  ++  P+L +PD    FV+ +
Sbjct: 453 KFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTT 512

Query: 181 DSSKKGLGCVLMQQGRVVAYASRQLKSHEQNYHTHDLELAAVVFALKIWRHYLYGEKIQI 240
           D+S   LG VL Q G  +++ SR L  HE NY   + EL A+V+A K +RHYL G +  I
Sbjct: 513 DASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFLI 572

Query: 241 FTDHKSLKYFFTQKELNMRQRRWLELVKNYDCEILYDPGKANVVANALSR 290
            +DH+ L++    KE   +  RW   +  Y  +I Y  GK N VA+ALSR
Sbjct: 573 ASDHQPLRWLHNLKEPGAKLERWRVRLSEYQFKIDYIKGKENSVADALSR 622

[Close]

BLAST of Cmc09g0247171 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 7.8e-52
Identity = 107/305 (35.08%), Postives = 174/305 (57.05%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMDLMNRVFKDFLDTFVIVFIDDILICSKIKAEHEKHLHRVLETLRANK 60
           + FGL NAP +F  +++ + ++ +     V+IDDI++ S+    H K+L  VL +L    
Sbjct: 250 LPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKAN 309

Query: 61  LYAKFSNCEFWLKKVSFLGHVVSSEGVSIDPAKVETITSWPRPSTVSEIRSFLGLVGYYR 120
           L        F   +V FLG++V+++G+  DP KV  I+  P P++V E++ FLG+  YYR
Sbjct: 310 LQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYR 369

Query: 121 RFVEDFSRIASPLIQLTR-----------KGTPFVWSPACESSFQELKQKLVSAPVLTVP 180
           +F++D++++A PL  LTR              P         SF +LK  L S+ +L  P
Sbjct: 370 KFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFP 429

Query: 181 DGSGSFVIYSDSSKKGLGCVLMQ----QGRVVAYASRQLKSHEQNYHTHDLELAAVVFAL 240
             +  F + +D+S   +G VL Q    + R +AY SR L   E+NY T + E+ A++++L
Sbjct: 430 CFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSL 489

Query: 241 KIWRHYLYGE-KIQIFTDHKSLKYFFTQKELNMRQRRWLELVKNYDCEILYDPGKANVVA 290
              R YLYG   I+++TDH+ L +    +  N + +RW   ++ Y+CE++Y PGK+NVVA
Sbjct: 490 DNLRAYLYGAGTIKVYTDHQPLTFALGNRNFNAKLKRWKARIEEYNCELIYKPGKSNVVA 549

[Close]

BLAST of Cmc09g0247171 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.5e-50
Identity = 107/303 (35.31%), Postives = 173/303 (57.10%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMDLMNRVFKDFLDTFVIVFIDDILICSKIKAEHEKHLHRVLETLRANK 60
           + FGL NA ++F   ++ V ++ +     V++DD++I S+ +++H +H+  VL+ L    
Sbjct: 309 LPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDAN 368

Query: 61  LYAKFSNCEFWLKKVSFLGHVVSSEGVSIDPAKVETITSWPRPSTVSEIRSFLGLVGYYR 120
           +        F+ + V +LG +VS +G   DP KV+ I  +P P  V ++RSFLGL  YYR
Sbjct: 369 MRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYR 428

Query: 121 RFVEDFSRIASPLIQLTR-----------KGTPFVWSPACESSFQELKQKLVSAPV-LTV 180
            F++DF+ IA P+  + +           K  P  ++    ++FQ L+  L S  V L  
Sbjct: 429 VFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKY 488

Query: 181 PDGSGSFVIYSDSSKKGLGCVLMQQGRVVAYASRQLKSHEQNYHTHDLELAAVVFALKIW 240
           PD    F + +D+S  G+G VL Q+GR +   SR LK  EQNY T++ EL A+V+AL   
Sbjct: 489 PDFKKPFDLTTDASASGIGAVLSQEGRPITMISRTLKQPEQNYATNERELLAIVWALGKL 548

Query: 241 RHYLYGEK-IQIFTDHKSLKYFFTQKELNMRQRRWLELVKNYDCEILYDPGKANVVANAL 291
           +++LYG + I IFTDH+ L +    +  N + +RW   +  ++ ++ Y PGK N VA+AL
Sbjct: 549 QNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRWKSYIDQHNAKVFYKPGKENFVADAL 608

[Close]

BLAST of Cmc09g0247171 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.5e-47
Identity = 125/413 (30.27%), Postives = 215/413 (52.06%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMDLMNRVFKDFLDTFVIVFIDDILICSKIKAEHEKHLHRVLETLRANK 60
           M +G++ AP  F   +N +  +  ++ V+ ++DDILI SK ++EH KH+  VL+ L+   
Sbjct: 534 MPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNAN 593

Query: 61  LYAKFSNCEFWLKKVSFLGHVVSSEGVSIDPAKVETITSWPRPSTVSEIRSFLGLVGYYR 120
           L    + CEF   +V F+G+ +S +G +     ++ +  W +P    E+R FLG V Y R
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLR 653

Query: 121 RFVEDFSRIASPLIQLTRKGTPFVWSPACESSFQELKQKLVSAPVLTVPDGSGSFVIYSD 180
           +F+   S++  PL  L +K   + W+P    + + +KQ LVS PVL   D S   ++ +D
Sbjct: 654 KFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETD 713

Query: 181 SSKKGLGCVLMQQG-----RVVAYASRQLKSHEQNYHTHDLELAAVVFALKIWRHYLYG- 240
           +S   +G VL Q+        V Y S ++   + NY   D E+ A++ +LK WRHYL   
Sbjct: 714 ASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLEST 773

Query: 241 -EKIQIFTDHKSLKYFFTQKE--LNMRQRRWLELVKNYDCEILYDPGKANVVANALSRKV 300
            E  +I TDH++L    T +    N R  RW   +++++ EI Y PG AN +A+ALSR  
Sbjct: 774 IEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSR-- 833

Query: 301 AHSAALITKQAPLLRDLERAEI-AVSIEEVTSQFA-QLIVQPTLRQRIIVAQLNDPYLVE 360
                ++ +  P+ +D E   I  V+   +T  F  Q++ + T   +++    N+   VE
Sbjct: 834 -----IVDETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVE 893

Query: 361 KRLLVEAGQSEDFSISSDDRLTFDGRLSVPEDSAVKEELLKEAHSSPFAMHPG 403
           + + ++ G      I+S D++       +P D+ +   ++K+ H     +HPG
Sbjct: 894 ENIQLKDG----LLINSKDQIL------LPNDTQLTRTIIKKYHEEGKLIHPG 929

[Close]

BLAST of Cmc09g0247171 vs. ExPASy TrEMBL
Match: A0A5A7SXW6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00560 PE=4 SV=1)

HSP 1 Score: 731.5 bits (1887), Expect = 2.0e-207
Identity = 365/414 (88.16%), Postives = 387/414 (93.48%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMDLMNRVFKDFLDTFVIVFIDDILICSKIKAEHEKHLHRVLETLRANK 60
           MSFGLTNAP V MDLMNRVFKDFLD+FVIVFIDDILI SKI+AEHE+HLH+VLETLRANK
Sbjct: 251 MSFGLTNAPAVIMDLMNRVFKDFLDSFVIVFIDDILIYSKIEAEHEEHLHQVLETLRANK 310

Query: 61  LYAKFSNCEFWLKKVSFLGHVVSSEGVSIDPAKVETITSWPRPSTVSEIRSFLGLVGYYR 120
           LYAKFS CEFWL+KV+FLGHVVSSEGVS+DPAK+E +T+WPRPSTVSEIRSFLGL GYYR
Sbjct: 311 LYAKFSKCEFWLRKVAFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 370

Query: 121 RFVEDFSRIASPLIQLTRKGTPFVWSPACESSFQELKQKLVSAPVLTVPDGSGSFVIYSD 180
           RFVEDFSRIASPL QLTRKGTPFVWSPACESSFQELKQKLV+APVLTVPDGSG+FVIYSD
Sbjct: 371 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGNFVIYSD 430

Query: 181 SSKKGLGCVLMQQGRVVAYASRQLKSHEQNYHTHDLELAAVVFALKIWRHYLYGEKIQIF 240
           +SKKGLGCVLMQQG+VVAYASRQLK HEQNY THDLELAAVVFALKIWRHYLYGEKIQI+
Sbjct: 431 ASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIY 490

Query: 241 TDHKSLKYFFTQKELNMRQRRWLELVKNYDCEILYDPGKANVVANALSRKVAHSAALITK 300
           TDHKSLKYFFTQKELNMRQRRWLELVK+YDCEILY PGKANVVA+ALSRKVAHSAALITK
Sbjct: 491 TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK 550

Query: 301 QAPLLRDLERAEIAVSIEEVTSQFAQLIVQPTLRQRIIVAQLNDPYLVEKRLLVEAGQSE 360
           Q PLLRD ERAEIAVS+ EVT+Q AQL VQPTLRQ+II AQLNDPYL EKR +VE GQ E
Sbjct: 551 QTPLLRDFERAEIAVSVGEVTAQLAQLSVQPTLRQKIIAAQLNDPYLAEKRRMVETGQGE 610

Query: 361 DFSISSDDRLTFDGRLSVPEDSAVKEELLKEAHSSPFAMHPGSTKMYQDLRCVY 415
           DFSISSDD L F+GRL VPEDSAVK ELL EAHSSPF MHPGSTKMYQDLR VY
Sbjct: 611 DFSISSDDGLMFEGRLCVPEDSAVKMELLTEAHSSPFTMHPGSTKMYQDLRSVY 664

[Close]

BLAST of Cmc09g0247171 vs. ExPASy TrEMBL
Match: A0A5A7VMR4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold550G00890 PE=4 SV=1)

HSP 1 Score: 730.3 bits (1884), Expect = 4.4e-207
Identity = 364/414 (87.92%), Postives = 387/414 (93.48%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMDLMNRVFKDFLDTFVIVFIDDILICSKIKAEHEKHLHRVLETLRANK 60
           MSFGLTNAP VFMDLMNRVFKDFLD+FVIVFIDDILI SK +AEHE+HLH+VLETLRANK
Sbjct: 521 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 580

Query: 61  LYAKFSNCEFWLKKVSFLGHVVSSEGVSIDPAKVETITSWPRPSTVSEIRSFLGLVGYYR 120
           LYAKFS CEFWL+KV+FLGHVVSSEGVS+DPAK+E +T+WPRPSTVSEIRSFLGL GYYR
Sbjct: 581 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 640

Query: 121 RFVEDFSRIASPLIQLTRKGTPFVWSPACESSFQELKQKLVSAPVLTVPDGSGSFVIYSD 180
           RFVEDFSRIASPL QLTRKGTPFVWSPACESSFQELKQKLV+APVLTVPDGSG+FVIYSD
Sbjct: 641 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGSGNFVIYSD 700

Query: 181 SSKKGLGCVLMQQGRVVAYASRQLKSHEQNYHTHDLELAAVVFALKIWRHYLYGEKIQIF 240
           +SKKGLGCVLMQQG+VVAYASRQLK HEQNY THDLELAAVVFALKIWRHYLYGEKIQI+
Sbjct: 701 ASKKGLGCVLMQQGKVVAYASRQLKVHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIY 760

Query: 241 TDHKSLKYFFTQKELNMRQRRWLELVKNYDCEILYDPGKANVVANALSRKVAHSAALITK 300
           TDHKSLKYFFTQKELNMRQRRWLELVK+YDCEILY PGKANVVA+ALSRKVAHSAALITK
Sbjct: 761 TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK 820

Query: 301 QAPLLRDLERAEIAVSIEEVTSQFAQLIVQPTLRQRIIVAQLNDPYLVEKRLLVEAGQSE 360
           Q PLLRD ERAEIAVS+ EVT+Q AQL VQPTLRQ+II AQLNDPYLVEKR +VE GQ E
Sbjct: 821 QTPLLRDFERAEIAVSVGEVTAQLAQLSVQPTLRQKIIAAQLNDPYLVEKRRMVETGQGE 880

Query: 361 DFSISSDDRLTFDGRLSVPEDSAVKEELLKEAHSSPFAMHPGSTKMYQDLRCVY 415
           DFSIS DD L F+GRL VPEDSAV+ ELL EAHSSPF MHPGSTKMYQDLR VY
Sbjct: 881 DFSISFDDGLMFEGRLCVPEDSAVRTELLTEAHSSPFTMHPGSTKMYQDLRSVY 934

[Close]

BLAST of Cmc09g0247171 vs. ExPASy TrEMBL
Match: A0A5D3CCF0 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold87G00620 PE=4 SV=1)

HSP 1 Score: 727.2 bits (1876), Expect = 3.7e-206
Identity = 365/414 (88.16%), Postives = 385/414 (93.00%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMDLMNRVFKDFLDTFVIVFIDDILICSKIKAEHEKHLHRVLETLRANK 60
           MSFGLTNAP VFMDLMNRVFKDFLD+FVIVFIDDILI SK +AEHE+HLH+VLETLRANK
Sbjct: 73  MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 132

Query: 61  LYAKFSNCEFWLKKVSFLGHVVSSEGVSIDPAKVETITSWPRPSTVSEIRSFLGLVGYYR 120
           LYAKFS CEFWLKKV+FLGHVVSSEGVS+D AK+E +T+WPRPSTV+EIRSFLGL GYYR
Sbjct: 133 LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDLAKIEAVTNWPRPSTVNEIRSFLGLAGYYR 192

Query: 121 RFVEDFSRIASPLIQLTRKGTPFVWSPACESSFQELKQKLVSAPVLTVPDGSGSFVIYSD 180
           RFVEDFSRIASPL QLTRKGTPFVWSP CESSF ELKQKLV+APVLTVPDGSGSFVIYSD
Sbjct: 193 RFVEDFSRIASPLTQLTRKGTPFVWSPTCESSFLELKQKLVTAPVLTVPDGSGSFVIYSD 252

Query: 181 SSKKGLGCVLMQQGRVVAYASRQLKSHEQNYHTHDLELAAVVFALKIWRHYLYGEKIQIF 240
            SKKGLGCVLMQQG+VVAYASRQLKSHEQNY THDLELAAVVF LKIWRHYLYGE+IQI+
Sbjct: 253 GSKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFTLKIWRHYLYGERIQIY 312

Query: 241 TDHKSLKYFFTQKELNMRQRRWLELVKNYDCEILYDPGKANVVANALSRKVAHSAALITK 300
           TDHKSLKYFFTQKELNMRQRRWLELVK+YDCEILY PGKANVVA+ALSRKVAHSAALITK
Sbjct: 313 TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK 372

Query: 301 QAPLLRDLERAEIAVSIEEVTSQFAQLIVQPTLRQRIIVAQLNDPYLVEKRLLVEAGQSE 360
           Q PLLRD ERAEIAVS+ EVTSQ AQL+VQPTLRQRIIVAQLNDPYLVEKR LVE  Q E
Sbjct: 373 QTPLLRDFERAEIAVSVGEVTSQLAQLLVQPTLRQRIIVAQLNDPYLVEKRRLVETEQGE 432

Query: 361 DFSISSDDRLTFDGRLSVPEDSAVKEELLKEAHSSPFAMHPGSTKMYQDLRCVY 415
           DFSISS+D L F+GRL VPEDSAVK ELL EAHSSPF MHPGSTKMYQDLR VY
Sbjct: 433 DFSISSNDGLMFEGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRSVY 486

[Close]

BLAST of Cmc09g0247171 vs. ExPASy TrEMBL
Match: A0A5A7V646 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1337G00030 PE=4 SV=1)

HSP 1 Score: 726.9 bits (1875), Expect = 4.9e-206
Identity = 362/414 (87.44%), Postives = 385/414 (93.00%), Query Frame = 0


Query: 1    MSFGLTNAPTVFMDLMNRVFKDFLDTFVIVFIDDILICSKIKAEHEKHLHRVLETLRANK 60
            MSFGLTNAP VFMDLMNRVFKDFLD+FVIVFIDDILI SK +AEHE+HLH+VLETLRANK
Sbjct: 713  MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 772

Query: 61   LYAKFSNCEFWLKKVSFLGHVVSSEGVSIDPAKVETITSWPRPSTVSEIRSFLGLVGYYR 120
            LYAKFS CEFWL+KV+FLGHVVSSEGVS+DPAK+E +T+WPRPSTVSEIRSFLGL GYYR
Sbjct: 773  LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 832

Query: 121  RFVEDFSRIASPLIQLTRKGTPFVWSPACESSFQELKQKLVSAPVLTVPDGSGSFVIYSD 180
            RFVEDFSRIASPL QLTRKGTPFVWSPACE SFQELKQKLV+APVLTVPDGSG+FVIYSD
Sbjct: 833  RFVEDFSRIASPLTQLTRKGTPFVWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSD 892

Query: 181  SSKKGLGCVLMQQGRVVAYASRQLKSHEQNYHTHDLELAAVVFALKIWRHYLYGEKIQIF 240
            +SKK LGCVLMQQG+VVAYASRQLK+HEQNY THDLELAAVVFALKIWRHYLYGEKIQI+
Sbjct: 893  ASKKELGCVLMQQGKVVAYASRQLKTHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIY 952

Query: 241  TDHKSLKYFFTQKELNMRQRRWLELVKNYDCEILYDPGKANVVANALSRKVAHSAALITK 300
            TDHKSLKYFFTQKELNMRQRRWLELVK+YDCEILY PGKANVVA+ALSRKVAHSAALITK
Sbjct: 953  TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK 1012

Query: 301  QAPLLRDLERAEIAVSIEEVTSQFAQLIVQPTLRQRIIVAQLNDPYLVEKRLLVEAGQSE 360
            Q PLLRD ERAEI VS+ EVT+Q AQL VQPTLRQ+II AQLNDPYL EKR +VE GQ E
Sbjct: 1013 QTPLLRDFERAEITVSVGEVTAQLAQLSVQPTLRQKIIAAQLNDPYLAEKRRMVETGQGE 1072

Query: 361  DFSISSDDRLTFDGRLSVPEDSAVKEELLKEAHSSPFAMHPGSTKMYQDLRCVY 415
            DFSISSDD L F+GRL VPEDSAVK ELL EAHSSPF MHPGSTKMYQDLR VY
Sbjct: 1073 DFSISSDDGLMFEGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRSVY 1126

[Close]

BLAST of Cmc09g0247171 vs. ExPASy TrEMBL
Match: A0A5A7V6R2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold827G00070 PE=4 SV=1)

HSP 1 Score: 726.1 bits (1873), Expect = 8.3e-206
Identity = 362/414 (87.44%), Postives = 385/414 (93.00%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMDLMNRVFKDFLDTFVIVFIDDILICSKIKAEHEKHLHRVLETLRANK 60
           MSFGLTNAP VFMDLMNRVFKDFLD+FVIVFIDDILI SK +AEHE+HLH+VLETLRANK
Sbjct: 251 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 310

Query: 61  LYAKFSNCEFWLKKVSFLGHVVSSEGVSIDPAKVETITSWPRPSTVSEIRSFLGLVGYYR 120
           LYAKFS CEFWL+KV+FLGHVVSSEGVS+DPAK+E +T+WPRPSTVSEIRSFLGL GYYR
Sbjct: 311 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 370

Query: 121 RFVEDFSRIASPLIQLTRKGTPFVWSPACESSFQELKQKLVSAPVLTVPDGSGSFVIYSD 180
           RFVEDFSRIASPL QLTRKGTPFVWSPACE SFQELKQKLV+APVLTVPDGSG+FVIYSD
Sbjct: 371 RFVEDFSRIASPLTQLTRKGTPFVWSPACERSFQELKQKLVTAPVLTVPDGSGNFVIYSD 430

Query: 181 SSKKGLGCVLMQQGRVVAYASRQLKSHEQNYHTHDLELAAVVFALKIWRHYLYGEKIQIF 240
           +SKKGLGCVLMQQG+VVAYASRQLK HEQNY THDLELAAVVFALKIWRHYLYGEKIQI+
Sbjct: 431 ASKKGLGCVLMQQGKVVAYASRQLKIHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIY 490

Query: 241 TDHKSLKYFFTQKELNMRQRRWLELVKNYDCEILYDPGKANVVANALSRKVAHSAALITK 300
           TDHKSLKYFFTQKELNMRQRRWLELVK+YDCEILY PGKANVVA+ALSRKVAHSAALITK
Sbjct: 491 TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITK 550

Query: 301 QAPLLRDLERAEIAVSIEEVTSQFAQLIVQPTLRQRIIVAQLNDPYLVEKRLLVEAGQSE 360
           Q PLLRD ERAEIAVS+ EVT+Q AQL VQPTLRQ+II AQLNDPYL EKR +VE  Q E
Sbjct: 551 QTPLLRDFERAEIAVSVGEVTAQLAQLTVQPTLRQKIIAAQLNDPYLAEKRRVVETEQGE 610

Query: 361 DFSISSDDRLTFDGRLSVPEDSAVKEELLKEAHSSPFAMHPGSTKMYQDLRCVY 415
           DFSISSDD L F+GRL VPED+AVK ELL EAHSSPF MHPGSTKMYQDLR VY
Sbjct: 611 DFSISSDDGLMFEGRLCVPEDNAVKTELLTEAHSSPFTMHPGSTKMYQDLRSVY 664

[Close]

BLAST of Cmc09g0247171 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 111.7 bits (278), Expect = 1.4e-24
Identity = 53/131 (40.46%), Postives = 79/131 (60.31%), Query Frame = 0


Query: 48  HLHRVLETLRANKLYAKFSNCEFWLKKVSFLG--HVVSSEGVSIDPAKVETITSWPRPST 107
           HL  VL+    ++ YA    C F   ++++LG  H++S EGVS DPAK+E +  WP P  
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 108 VSEIRSFLGLVGYYRRFVEDFSRIASPLIQLTRKGTPFVWSPACESSFQELKQKLVSAPV 167
            +E+R FLGL GYYRRFV+++ +I  PL +L +K +   W+     +F+ LK  + + PV
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNS-LKWTEMAALAFKALKGAVTTLPV 122

Query: 168 LTVPDGSGSFV 177
           L +PD    FV
Sbjct: 123 LALPDLKLPFV 132

The following BLAST results are available for this feature:

BLAST of Cmc09g0247171 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035890.1	4.1e-207	88.16	pol protein [Cucumis melo var. makuwa]	[more]
KAA0066951.1	9.1e-207	87.92	pol protein [Cucumis melo var. makuwa]	[more]
TYK08868.1	7.7e-206	88.16	pol protein [Cucumis melo var. makuwa]	[more]
KAA0063098.1	1.0e-205	87.44	pol protein [Cucumis melo var. makuwa]	[more]
KAA0063793.1	1.7e-205	87.44	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc09g0247171 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	2.4e-56	38.97	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	2.4e-53	38.28	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
Q8I7P9	7.8e-52	35.08	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P10401	2.5e-50	35.31	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]
P0CT41	1.5e-47	30.27	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of Cmc09g0247171 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SXW6	2.0e-207	88.16	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56...	[more]
A0A5A7VMR4	4.4e-207	87.92	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55...	[more]
A0A5D3CCF0	3.7e-206	88.16	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold87G00620 PE=...	[more]
A0A5A7V646	4.9e-206	87.44	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13...	[more]
A0A5A7V6R2	8.3e-206	87.44	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82...	[more]

BLAST of Cmc09g0247171 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	1.4e-24	40.46	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 1..81 e-value: 7.7E-12 score: 45.2
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..88 e-value: 4.3E-30 score: 106.3
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 92..172 e-value: 2.1E-31 score: 109.7
IPR041373	Reverse transcriptase, RNase H-like domain	PFAM	PF17917	RT_RNaseH	coord: 173..269 e-value: 3.9E-34 score: 117.1
None	No IPR available	GENE3D	3.10.20.370		coord: 173..240 e-value: 4.8E-8 score: 34.9
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 81..407
None	No IPR available	PANTHER	PTHR24559:SF355	PROTEIN, PUTATIVE-RELATED	coord: 81..407
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..82 e-value: 1.83171E-32 score: 118.852
None	No IPR available	CDD	cd09274	RNase_HI_RT_Ty3	coord: 176..291 e-value: 1.0341E-56 score: 180.381
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..275

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc09g0247171.1	Cmc09g0247171.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding