Cmc09g0246091 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc09g0246091
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty3/gypsy retrotransposon protein
Location	CMiso1.1chr09: 9635515 .. 9636150 (-)
RNA-Seq Expression	Cmc09g0246091
Synteny	Cmc09g0246091

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAGATATAAGGGTCGGCTGGTAATTTCAGAATCTTCCATATTGATCCCATCAATTTTACGAACCTATCATGATTCAGCCCTGGGAGGTCACTCTGGATTCTTACGAACTTACAAAAGAATAGCAGGTGAGTTGTATCGGGAAGGTACGAAGGCTTATATAAAAAGATATTGTGAAGAGTGTTTAGTGTGTCAGCAAAATAAAACATTGGCCCTTTTGCCTACTGGATTATTGTTGTCACTAGAGATTCCTACACAAGTTTGGAGTGATATATCCATGGATTTCATGGATGGACTACCAAAAACAACTGGTTTTGAGGTGATTTTTGTAGTTATGGATCGCTTGAGTAAGTACGGGCACTTTTTACCATTAAAGCATCCTTATTCAGCAAAGACAGTAGCAGAGTTGTTTGTGAAAGAAGTGGTAAGGCTTCATGCTTTTCCTACATCGATTGTATCAGATAGAGATAAGGTGTTACTTAGCTGTTTTTGGAAGGAGATGTTTCGGTTAGCAAGCACGAAACTGAATAGAAGTTCTGCATACCATCTCCAGTCAGATAGGCAGACAGAATTGGTGAACAGGAGAGTGGAAGTTTATTTGCGATGTTTTTGCAATGAGAAACCAAAAGAGTAG

mRNA sequence

ATGTTGAGATATAAGGGTCGGCTGGTAATTTCAGAATCTTCCATATTGATCCCATCAATTTTACGAACCTATCATGATTCAGCCCTGGGAGGTCACTCTGGATTCTTACGAACTTACAAAAGAATAGCAGGTGAGTTGTATCGGGAAGGTACGAAGGCTTATATAAAAAGATATTGTGAAGAGTGTTTAGTGTGTCAGCAAAATAAAACATTGGCCCTTTTGCCTACTGGATTATTGTTGTCACTAGAGATTCCTACACAAGTTTGGAGTGATATATCCATGGATTTCATGGATGGACTACCAAAAACAACTGGTTTTGAGGTGATTTTTGTAGTTATGGATCGCTTGAGTAAGTACGGGCACTTTTTACCATTAAAGCATCCTTATTCAGCAAAGACAGTAGCAGAGTTGTTTGTGAAAGAAGTGGTAAGGCTTCATGCTTTTCCTACATCGATTGTATCAGATAGAGATAAGGTGTTACTTAGCTGTTTTTGGAAGGAGATGTTTCGGTTAGCAAGCACGAAACTGAATAGAAGTTCTGCATACCATCTCCAGTCAGATAGGCAGACAGAATTGGTGAACAGGAGAGTGGAAGTTTATTTGCGATGTTTTTGCAATGAGAAACCAAAAGAGTAG

Coding sequence (CDS)

ATGTTGAGATATAAGGGTCGGCTGGTAATTTCAGAATCTTCCATATTGATCCCATCAATTTTACGAACCTATCATGATTCAGCCCTGGGAGGTCACTCTGGATTCTTACGAACTTACAAAAGAATAGCAGGTGAGTTGTATCGGGAAGGTACGAAGGCTTATATAAAAAGATATTGTGAAGAGTGTTTAGTGTGTCAGCAAAATAAAACATTGGCCCTTTTGCCTACTGGATTATTGTTGTCACTAGAGATTCCTACACAAGTTTGGAGTGATATATCCATGGATTTCATGGATGGACTACCAAAAACAACTGGTTTTGAGGTGATTTTTGTAGTTATGGATCGCTTGAGTAAGTACGGGCACTTTTTACCATTAAAGCATCCTTATTCAGCAAAGACAGTAGCAGAGTTGTTTGTGAAAGAAGTGGTAAGGCTTCATGCTTTTCCTACATCGATTGTATCAGATAGAGATAAGGTGTTACTTAGCTGTTTTTGGAAGGAGATGTTTCGGTTAGCAAGCACGAAACTGAATAGAAGTTCTGCATACCATCTCCAGTCAGATAGGCAGACAGAATTGGTGAACAGGAGAGTGGAAGTTTATTTGCGATGTTTTTGCAATGAGAAACCAAAAGAGTAG

Protein sequence

MLRYKGRLVISESSILIPSILRTYHDSALGGHSGFLRTYKRIAGELYREGTKAYIKRYCEECLVCQQNKTLALLPTGLLLSLEIPTQVWSDISMDFMDGLPKTTGFEVIFVVMDRLSKYGHFLPLKHPYSAKTVAELFVKEVVRLHAFPTSIVSDRDKVLLSCFWKEMFRLASTKLNRSSAYHLQSDRQTELVNRRVEVYLRCFCNEKPKE

Homology

[Close]

BLAST of Cmc09g0246091 vs. NCBI nr
Match: KAA0057179.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK18781.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 352.1 bits (902), Expect = 3.4e-93
Identity = 169/211 (80.09%), Postives = 187/211 (88.63%), Query Frame = 0


Query: 1    MLRYKGRLVISESSILIPSILRTYHDSALGGHSGFLRTYKRIAGELYREGTKAYIKRYCE 60
            ML+YK RLVIS++S LIP IL +YHDSA+GGHSGFLRTYKRI+GELY +G KA +K+YC 
Sbjct: 976  MLKYKDRLVISQTSKLIPQILHSYHDSAVGGHSGFLRTYKRISGELYWQGMKAVVKKYCA 1035

Query: 61   ECLVCQQNKTLALLPTGLLLSLEIPTQVWSDISMDFMDGLPKTTGFEVIFVVMDRLSKYG 120
            ECL+CQQNKTL L P GLLL L IPT +W+DISMDF++GLPK  GFEVIFVV+DRLSKYG
Sbjct: 1036 ECLICQQNKTLCLSPAGLLLPLNIPTLIWNDISMDFVEGLPKAAGFEVIFVVVDRLSKYG 1095

Query: 121  HFLPLKHPYSAKTVAELFVKEVVRLHAFPTSIVSDRDKVLLSCFWKEMFRLASTKLNRSS 180
            HFLPLKHPYSAKTVAELFVKEVVRLH FP SIVSDRD+V LS FWKEMFRLA TKLNRSS
Sbjct: 1096 HFLPLKHPYSAKTVAELFVKEVVRLHGFPASIVSDRDRVFLSNFWKEMFRLAGTKLNRSS 1155

Query: 181  AYHLQSDRQTELVNRRVEVYLRCFCNEKPKE 212
            AYH QSD QTE+VNR VEVYLRCFCN+KPKE
Sbjct: 1156 AYHPQSDGQTEVVNRGVEVYLRCFCNDKPKE 1186

[Close]

BLAST of Cmc09g0246091 vs. NCBI nr
Match: KAA0032254.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 351.7 bits (901), Expect = 4.5e-93
Identity = 172/211 (81.52%), Postives = 187/211 (88.63%), Query Frame = 0


Query: 1   MLRYKGRLVISESSILIPSILRTYHDSALGGHSGFLRTYKRIAGELYREGTKAYIKRYCE 60
           MLRYK RLV+S+SS LIP IL +YHDSA+GGHSGFLRTYKRIAGELY +G KA IK+YC 
Sbjct: 741 MLRYKDRLVVSQSSKLIPHILHSYHDSAVGGHSGFLRTYKRIAGELYWQGMKAVIKKYCA 800

Query: 61  ECLVCQQNKTLALLPTGLLLSLEIPTQVWSDISMDFMDGLPKTTGFEVIFVVMDRLSKYG 120
           ECL+CQ+NKTL L P GLLL L IPTQVWSDISMDF++GLPK  GFEVIFVV+D LSKYG
Sbjct: 801 ECLICQRNKTLCLSPAGLLLPLAIPTQVWSDISMDFVEGLPKAVGFEVIFVVVDGLSKYG 860

Query: 121 HFLPLKHPYSAKTVAELFVKEVVRLHAFPTSIVSDRDKVLLSCFWKEMFRLASTKLNRSS 180
           HFL LKHPYSAKTVAELFV+EVVRLH FPTSIVSDRD+V LS FWKEMFRLA TKLNRSS
Sbjct: 861 HFLRLKHPYSAKTVAELFVREVVRLHGFPTSIVSDRDRVFLSNFWKEMFRLAGTKLNRSS 920

Query: 181 AYHLQSDRQTELVNRRVEVYLRCFCNEKPKE 212
           AYH QSD QT++VNR VEVYLRCFCNEKPKE
Sbjct: 921 AYHPQSDGQTKVVNRGVEVYLRCFCNEKPKE 951

[Close]

BLAST of Cmc09g0246091 vs. NCBI nr
Match: TYJ96875.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK19540.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 351.3 bits (900), Expect = 5.9e-93
Identity = 168/211 (79.62%), Postives = 187/211 (88.63%), Query Frame = 0


Query: 1    MLRYKGRLVISESSILIPSILRTYHDSALGGHSGFLRTYKRIAGELYREGTKAYIKRYCE 60
            ML+YK RLVIS++S LIP IL +YHDSA+GGHSGFLRTYKRI+GELY +G KA +K+YC 
Sbjct: 1097 MLKYKDRLVISQTSKLIPQILHSYHDSAVGGHSGFLRTYKRISGELYWQGMKAVVKKYCA 1156

Query: 61   ECLVCQQNKTLALLPTGLLLSLEIPTQVWSDISMDFMDGLPKTTGFEVIFVVMDRLSKYG 120
            ECL+CQQNKTL L P GLLL L IPT +W+DISMDF++GLPK  GFEVIFVV+DRLSKYG
Sbjct: 1157 ECLICQQNKTLCLSPAGLLLPLNIPTLIWNDISMDFVEGLPKAAGFEVIFVVVDRLSKYG 1216

Query: 121  HFLPLKHPYSAKTVAELFVKEVVRLHAFPTSIVSDRDKVLLSCFWKEMFRLASTKLNRSS 180
            HF+PLKHPYSAKTVAELFVKEVVRLH FP SIVSDRD+V LS FWKEMFRLA TKLNRSS
Sbjct: 1217 HFIPLKHPYSAKTVAELFVKEVVRLHGFPASIVSDRDRVFLSNFWKEMFRLAGTKLNRSS 1276

Query: 181  AYHLQSDRQTELVNRRVEVYLRCFCNEKPKE 212
            AYH QSD QTE+VNR VEVYLRCFCN+KPKE
Sbjct: 1277 AYHPQSDGQTEVVNRGVEVYLRCFCNDKPKE 1307

[Close]

BLAST of Cmc09g0246091 vs. NCBI nr
Match: KAA0068193.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 351.3 bits (900), Expect = 5.9e-93
Identity = 168/211 (79.62%), Postives = 187/211 (88.63%), Query Frame = 0


Query: 1    MLRYKGRLVISESSILIPSILRTYHDSALGGHSGFLRTYKRIAGELYREGTKAYIKRYCE 60
            ML+YK RLVIS++S LIP IL +YHDSA+GGHSGFLRTYKRI+GELY +G KA +K+YC 
Sbjct: 1097 MLKYKDRLVISQTSKLIPQILHSYHDSAVGGHSGFLRTYKRISGELYWQGMKAVVKKYCA 1156

Query: 61   ECLVCQQNKTLALLPTGLLLSLEIPTQVWSDISMDFMDGLPKTTGFEVIFVVMDRLSKYG 120
            ECL+CQQNKTL L P GLLL L IPT +W+DISMDF++GLPK  GFEVIFVV+DRLSKYG
Sbjct: 1157 ECLICQQNKTLCLSPAGLLLPLNIPTLIWNDISMDFVEGLPKAAGFEVIFVVVDRLSKYG 1216

Query: 121  HFLPLKHPYSAKTVAELFVKEVVRLHAFPTSIVSDRDKVLLSCFWKEMFRLASTKLNRSS 180
            HF+PLKHPYSAKTVAELFVKEVVRLH FP SIVSDRD+V LS FWKEMFRLA TKLNRSS
Sbjct: 1217 HFIPLKHPYSAKTVAELFVKEVVRLHGFPASIVSDRDRVFLSNFWKEMFRLAGTKLNRSS 1276

Query: 181  AYHLQSDRQTELVNRRVEVYLRCFCNEKPKE 212
            AYH QSD QTE+VNR VEVYLRCFCN+KPKE
Sbjct: 1277 AYHPQSDGQTEVVNRGVEVYLRCFCNDKPKE 1307

[Close]

BLAST of Cmc09g0246091 vs. NCBI nr
Match: KAA0062868.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 349.7 bits (896), Expect = 1.7e-92
Identity = 167/211 (79.15%), Postives = 186/211 (88.15%), Query Frame = 0


Query: 1    MLRYKGRLVISESSILIPSILRTYHDSALGGHSGFLRTYKRIAGELYREGTKAYIKRYCE 60
            ML+YK RLVIS++S LIP IL +YHDSA+GGHSGFLRTYKRI+GELY +G KA +K+YC 
Sbjct: 1097 MLKYKDRLVISQTSKLIPQILHSYHDSAVGGHSGFLRTYKRISGELYWQGMKAVVKKYCA 1156

Query: 61   ECLVCQQNKTLALLPTGLLLSLEIPTQVWSDISMDFMDGLPKTTGFEVIFVVMDRLSKYG 120
            ECL+CQQNKTL L P GLLL L IPT +W+DISMDF++GLPK  GFEVIFVV+DRLSKYG
Sbjct: 1157 ECLICQQNKTLCLSPAGLLLPLNIPTLIWNDISMDFVEGLPKAAGFEVIFVVVDRLSKYG 1216

Query: 121  HFLPLKHPYSAKTVAELFVKEVVRLHAFPTSIVSDRDKVLLSCFWKEMFRLASTKLNRSS 180
            HF+PLKHPYSAKTVAELFVKEVVRLH FP SIVSDRD+V LS FWKEMFRLA TKLNRSS
Sbjct: 1217 HFIPLKHPYSAKTVAELFVKEVVRLHGFPASIVSDRDRVFLSNFWKEMFRLAGTKLNRSS 1276

Query: 181  AYHLQSDRQTELVNRRVEVYLRCFCNEKPKE 212
            AYH QSD QTE+VNR VE YLRCFCN+KPKE
Sbjct: 1277 AYHPQSDGQTEVVNRGVEAYLRCFCNDKPKE 1307

[Close]

BLAST of Cmc09g0246091 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.1e-24
Identity = 65/211 (30.81%), Postives = 102/211 (48.34%), Query Frame = 0


Query: 6    GRLVISESSILIP-------SILRTYHDSALGGHSGFLRTYKRIAGELYREGTKAYIKRY 65
            G L+ S+  IL+P       +I++ YH+     H G       I      +G +  I+ Y
Sbjct: 894  GLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEY 953

Query: 66   CEECLVCQQNKTLALLPTGLLLSLEIPTQVWSDISMDFMDGLPKTTGFEVIFVVMDRLSK 125
             + C  CQ NK+    P G L  +    + W  +SMDF+  LP+++G+  +FVV+DR SK
Sbjct: 954  VQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSK 1013

Query: 126  YGHFLPLKHPYSAKTVAELFVKEVVRLHAFPTSIVSDRDKVLLSCFWKEMFRLASTKLNR 185
                +P     +A+  A +F + V+     P  I++D D +  S  WK+     +  +  
Sbjct: 1014 MAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKF 1073

Query: 186  SSAYHLQSDRQTELVNRRVEVYLRCFCNEKP 210
            S  Y  Q+D QTE  N+ VE  LRC C+  P
Sbjct: 1074 SLPYRPQTDGQTERTNQTVEKLLRCVCSTHP 1104

[Close]

BLAST of Cmc09g0246091 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.1e-24
Identity = 65/211 (30.81%), Postives = 102/211 (48.34%), Query Frame = 0


Query: 6    GRLVISESSILIP-------SILRTYHDSALGGHSGFLRTYKRIAGELYREGTKAYIKRY 65
            G L+ S+  IL+P       +I++ YH+     H G       I      +G +  I+ Y
Sbjct: 894  GLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEY 953

Query: 66   CEECLVCQQNKTLALLPTGLLLSLEIPTQVWSDISMDFMDGLPKTTGFEVIFVVMDRLSK 125
             + C  CQ NK+    P G L  +    + W  +SMDF+  LP+++G+  +FVV+DR SK
Sbjct: 954  VQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSK 1013

Query: 126  YGHFLPLKHPYSAKTVAELFVKEVVRLHAFPTSIVSDRDKVLLSCFWKEMFRLASTKLNR 185
                +P     +A+  A +F + V+     P  I++D D +  S  WK+     +  +  
Sbjct: 1014 MAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKF 1073

Query: 186  SSAYHLQSDRQTELVNRRVEVYLRCFCNEKP 210
            S  Y  Q+D QTE  N+ VE  LRC C+  P
Sbjct: 1074 SLPYRPQTDGQTERTNQTVEKLLRCVCSTHP 1104

[Close]

BLAST of Cmc09g0246091 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.1e-24
Identity = 65/211 (30.81%), Postives = 102/211 (48.34%), Query Frame = 0


Query: 6    GRLVISESSILIP-------SILRTYHDSALGGHSGFLRTYKRIAGELYREGTKAYIKRY 65
            G L+ S+  IL+P       +I++ YH+     H G       I      +G +  I+ Y
Sbjct: 894  GLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEY 953

Query: 66   CEECLVCQQNKTLALLPTGLLLSLEIPTQVWSDISMDFMDGLPKTTGFEVIFVVMDRLSK 125
             + C  CQ NK+    P G L  +    + W  +SMDF+  LP+++G+  +FVV+DR SK
Sbjct: 954  VQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSK 1013

Query: 126  YGHFLPLKHPYSAKTVAELFVKEVVRLHAFPTSIVSDRDKVLLSCFWKEMFRLASTKLNR 185
                +P     +A+  A +F + V+     P  I++D D +  S  WK+     +  +  
Sbjct: 1014 MAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKF 1073

Query: 186  SSAYHLQSDRQTELVNRRVEVYLRCFCNEKP 210
            S  Y  Q+D QTE  N+ VE  LRC C+  P
Sbjct: 1074 SLPYRPQTDGQTERTNQTVEKLLRCVCSTHP 1104

[Close]

BLAST of Cmc09g0246091 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.1e-24
Identity = 65/211 (30.81%), Postives = 102/211 (48.34%), Query Frame = 0


Query: 6    GRLVISESSILIP-------SILRTYHDSALGGHSGFLRTYKRIAGELYREGTKAYIKRY 65
            G L+ S+  IL+P       +I++ YH+     H G       I      +G +  I+ Y
Sbjct: 894  GLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEY 953

Query: 66   CEECLVCQQNKTLALLPTGLLLSLEIPTQVWSDISMDFMDGLPKTTGFEVIFVVMDRLSK 125
             + C  CQ NK+    P G L  +    + W  +SMDF+  LP+++G+  +FVV+DR SK
Sbjct: 954  VQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSK 1013

Query: 126  YGHFLPLKHPYSAKTVAELFVKEVVRLHAFPTSIVSDRDKVLLSCFWKEMFRLASTKLNR 185
                +P     +A+  A +F + V+     P  I++D D +  S  WK+     +  +  
Sbjct: 1014 MAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKF 1073

Query: 186  SSAYHLQSDRQTELVNRRVEVYLRCFCNEKP 210
            S  Y  Q+D QTE  N+ VE  LRC C+  P
Sbjct: 1074 SLPYRPQTDGQTERTNQTVEKLLRCVCSTHP 1104

[Close]

BLAST of Cmc09g0246091 vs. ExPASy Swiss-Prot
Match: P0CT36 (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.1e-24
Identity = 65/211 (30.81%), Postives = 102/211 (48.34%), Query Frame = 0


Query: 6    GRLVISESSILIP-------SILRTYHDSALGGHSGFLRTYKRIAGELYREGTKAYIKRY 65
            G L+ S+  IL+P       +I++ YH+     H G       I      +G +  I+ Y
Sbjct: 894  GLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEY 953

Query: 66   CEECLVCQQNKTLALLPTGLLLSLEIPTQVWSDISMDFMDGLPKTTGFEVIFVVMDRLSK 125
             + C  CQ NK+    P G L  +    + W  +SMDF+  LP+++G+  +FVV+DR SK
Sbjct: 954  VQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSK 1013

Query: 126  YGHFLPLKHPYSAKTVAELFVKEVVRLHAFPTSIVSDRDKVLLSCFWKEMFRLASTKLNR 185
                +P     +A+  A +F + V+     P  I++D D +  S  WK+     +  +  
Sbjct: 1014 MAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKF 1073

Query: 186  SSAYHLQSDRQTELVNRRVEVYLRCFCNEKP 210
            S  Y  Q+D QTE  N+ VE  LRC C+  P
Sbjct: 1074 SLPYRPQTDGQTERTNQTVEKLLRCVCSTHP 1104

[Close]

BLAST of Cmc09g0246091 vs. ExPASy TrEMBL
Match: A0A5D3D5G0 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold257G00880 PE=4 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 1.7e-93
Identity = 169/211 (80.09%), Postives = 187/211 (88.63%), Query Frame = 0


Query: 1    MLRYKGRLVISESSILIPSILRTYHDSALGGHSGFLRTYKRIAGELYREGTKAYIKRYCE 60
            ML+YK RLVIS++S LIP IL +YHDSA+GGHSGFLRTYKRI+GELY +G KA +K+YC 
Sbjct: 976  MLKYKDRLVISQTSKLIPQILHSYHDSAVGGHSGFLRTYKRISGELYWQGMKAVVKKYCA 1035

Query: 61   ECLVCQQNKTLALLPTGLLLSLEIPTQVWSDISMDFMDGLPKTTGFEVIFVVMDRLSKYG 120
            ECL+CQQNKTL L P GLLL L IPT +W+DISMDF++GLPK  GFEVIFVV+DRLSKYG
Sbjct: 1036 ECLICQQNKTLCLSPAGLLLPLNIPTLIWNDISMDFVEGLPKAAGFEVIFVVVDRLSKYG 1095

Query: 121  HFLPLKHPYSAKTVAELFVKEVVRLHAFPTSIVSDRDKVLLSCFWKEMFRLASTKLNRSS 180
            HFLPLKHPYSAKTVAELFVKEVVRLH FP SIVSDRD+V LS FWKEMFRLA TKLNRSS
Sbjct: 1096 HFLPLKHPYSAKTVAELFVKEVVRLHGFPASIVSDRDRVFLSNFWKEMFRLAGTKLNRSS 1155

Query: 181  AYHLQSDRQTELVNRRVEVYLRCFCNEKPKE 212
            AYH QSD QTE+VNR VEVYLRCFCN+KPKE
Sbjct: 1156 AYHPQSDGQTEVVNRGVEVYLRCFCNDKPKE 1186

[Close]

BLAST of Cmc09g0246091 vs. ExPASy TrEMBL
Match: A0A5A7SM43 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G00860 PE=4 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 2.2e-93
Identity = 172/211 (81.52%), Postives = 187/211 (88.63%), Query Frame = 0


Query: 1   MLRYKGRLVISESSILIPSILRTYHDSALGGHSGFLRTYKRIAGELYREGTKAYIKRYCE 60
           MLRYK RLV+S+SS LIP IL +YHDSA+GGHSGFLRTYKRIAGELY +G KA IK+YC 
Sbjct: 741 MLRYKDRLVVSQSSKLIPHILHSYHDSAVGGHSGFLRTYKRIAGELYWQGMKAVIKKYCA 800

Query: 61  ECLVCQQNKTLALLPTGLLLSLEIPTQVWSDISMDFMDGLPKTTGFEVIFVVMDRLSKYG 120
           ECL+CQ+NKTL L P GLLL L IPTQVWSDISMDF++GLPK  GFEVIFVV+D LSKYG
Sbjct: 801 ECLICQRNKTLCLSPAGLLLPLAIPTQVWSDISMDFVEGLPKAVGFEVIFVVVDGLSKYG 860

Query: 121 HFLPLKHPYSAKTVAELFVKEVVRLHAFPTSIVSDRDKVLLSCFWKEMFRLASTKLNRSS 180
           HFL LKHPYSAKTVAELFV+EVVRLH FPTSIVSDRD+V LS FWKEMFRLA TKLNRSS
Sbjct: 861 HFLRLKHPYSAKTVAELFVREVVRLHGFPTSIVSDRDRVFLSNFWKEMFRLAGTKLNRSS 920

Query: 181 AYHLQSDRQTELVNRRVEVYLRCFCNEKPKE 212
           AYH QSD QT++VNR VEVYLRCFCNEKPKE
Sbjct: 921 AYHPQSDGQTKVVNRGVEVYLRCFCNEKPKE 951

[Close]

BLAST of Cmc09g0246091 vs. ExPASy TrEMBL
Match: A0A5D3BEL2 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00340 PE=4 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 2.8e-93
Identity = 168/211 (79.62%), Postives = 187/211 (88.63%), Query Frame = 0


Query: 1    MLRYKGRLVISESSILIPSILRTYHDSALGGHSGFLRTYKRIAGELYREGTKAYIKRYCE 60
            ML+YK RLVIS++S LIP IL +YHDSA+GGHSGFLRTYKRI+GELY +G KA +K+YC 
Sbjct: 1097 MLKYKDRLVISQTSKLIPQILHSYHDSAVGGHSGFLRTYKRISGELYWQGMKAVVKKYCA 1156

Query: 61   ECLVCQQNKTLALLPTGLLLSLEIPTQVWSDISMDFMDGLPKTTGFEVIFVVMDRLSKYG 120
            ECL+CQQNKTL L P GLLL L IPT +W+DISMDF++GLPK  GFEVIFVV+DRLSKYG
Sbjct: 1157 ECLICQQNKTLCLSPAGLLLPLNIPTLIWNDISMDFVEGLPKAAGFEVIFVVVDRLSKYG 1216

Query: 121  HFLPLKHPYSAKTVAELFVKEVVRLHAFPTSIVSDRDKVLLSCFWKEMFRLASTKLNRSS 180
            HF+PLKHPYSAKTVAELFVKEVVRLH FP SIVSDRD+V LS FWKEMFRLA TKLNRSS
Sbjct: 1217 HFIPLKHPYSAKTVAELFVKEVVRLHGFPASIVSDRDRVFLSNFWKEMFRLAGTKLNRSS 1276

Query: 181  AYHLQSDRQTELVNRRVEVYLRCFCNEKPKE 212
            AYH QSD QTE+VNR VEVYLRCFCN+KPKE
Sbjct: 1277 AYHPQSDGQTEVVNRGVEVYLRCFCNDKPKE 1307

[Close]

BLAST of Cmc09g0246091 vs. ExPASy TrEMBL
Match: A0A5A7VJA0 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G001740 PE=4 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 2.8e-93
Identity = 168/211 (79.62%), Postives = 187/211 (88.63%), Query Frame = 0


Query: 1    MLRYKGRLVISESSILIPSILRTYHDSALGGHSGFLRTYKRIAGELYREGTKAYIKRYCE 60
            ML+YK RLVIS++S LIP IL +YHDSA+GGHSGFLRTYKRI+GELY +G KA +K+YC 
Sbjct: 1097 MLKYKDRLVISQTSKLIPQILHSYHDSAVGGHSGFLRTYKRISGELYWQGMKAVVKKYCA 1156

Query: 61   ECLVCQQNKTLALLPTGLLLSLEIPTQVWSDISMDFMDGLPKTTGFEVIFVVMDRLSKYG 120
            ECL+CQQNKTL L P GLLL L IPT +W+DISMDF++GLPK  GFEVIFVV+DRLSKYG
Sbjct: 1157 ECLICQQNKTLCLSPAGLLLPLNIPTLIWNDISMDFVEGLPKAAGFEVIFVVVDRLSKYG 1216

Query: 121  HFLPLKHPYSAKTVAELFVKEVVRLHAFPTSIVSDRDKVLLSCFWKEMFRLASTKLNRSS 180
            HF+PLKHPYSAKTVAELFVKEVVRLH FP SIVSDRD+V LS FWKEMFRLA TKLNRSS
Sbjct: 1217 HFIPLKHPYSAKTVAELFVKEVVRLHGFPASIVSDRDRVFLSNFWKEMFRLAGTKLNRSS 1276

Query: 181  AYHLQSDRQTELVNRRVEVYLRCFCNEKPKE 212
            AYH QSD QTE+VNR VEVYLRCFCN+KPKE
Sbjct: 1277 AYHPQSDGQTEVVNRGVEVYLRCFCNDKPKE 1307

[Close]

BLAST of Cmc09g0246091 vs. ExPASy TrEMBL
Match: A0A5A7V5H5 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2406G00250 PE=4 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 8.3e-93
Identity = 167/211 (79.15%), Postives = 186/211 (88.15%), Query Frame = 0


Query: 1    MLRYKGRLVISESSILIPSILRTYHDSALGGHSGFLRTYKRIAGELYREGTKAYIKRYCE 60
            ML+YK RLVIS++S LIP IL +YHDSA+GGHSGFLRTYKRI+GELY +G KA +K+YC 
Sbjct: 1097 MLKYKDRLVISQTSKLIPQILHSYHDSAVGGHSGFLRTYKRISGELYWQGMKAVVKKYCA 1156

Query: 61   ECLVCQQNKTLALLPTGLLLSLEIPTQVWSDISMDFMDGLPKTTGFEVIFVVMDRLSKYG 120
            ECL+CQQNKTL L P GLLL L IPT +W+DISMDF++GLPK  GFEVIFVV+DRLSKYG
Sbjct: 1157 ECLICQQNKTLCLSPAGLLLPLNIPTLIWNDISMDFVEGLPKAAGFEVIFVVVDRLSKYG 1216

Query: 121  HFLPLKHPYSAKTVAELFVKEVVRLHAFPTSIVSDRDKVLLSCFWKEMFRLASTKLNRSS 180
            HF+PLKHPYSAKTVAELFVKEVVRLH FP SIVSDRD+V LS FWKEMFRLA TKLNRSS
Sbjct: 1217 HFIPLKHPYSAKTVAELFVKEVVRLHGFPASIVSDRDRVFLSNFWKEMFRLAGTKLNRSS 1276

Query: 181  AYHLQSDRQTELVNRRVEVYLRCFCNEKPKE 212
            AYH QSD QTE+VNR VE YLRCFCN+KPKE
Sbjct: 1277 AYHPQSDGQTEVVNRGVEAYLRCFCNDKPKE 1307

The following BLAST results are available for this feature:

BLAST of Cmc09g0246091 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0057179.1	3.4e-93	80.09	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK18781.1 Ty3/gyp...	[more]
KAA0032254.1	4.5e-93	81.52	Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]
TYJ96875.1	5.9e-93	79.62	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK19540.1 Ty3/gyp...	[more]
KAA0068193.1	5.9e-93	79.62	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0062868.1	1.7e-92	79.15	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc09g0246091 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9UR07	2.1e-24	30.81	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	2.1e-24	30.81	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	2.1e-24	30.81	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	2.1e-24	30.81	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT36	2.1e-24	30.81	Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc09g0246091 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D5G0	1.7e-93	80.09	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7SM43	2.2e-93	81.52	Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3BEL2	2.8e-93	79.62	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7VJA0	2.8e-93	79.62	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7V5H5	8.3e-93	79.15	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of Cmc09g0246091 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.340.70		coord: 2..69 e-value: 1.4E-10 score: 43.3
None	No IPR available	PANTHER	PTHR45835	YALI0A06105P	coord: 20..210
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 78..211 e-value: 2.0E-26 score: 94.5
IPR041588	Integrase zinc-binding domain	PFAM	PF17921	Integrase_H2C2	coord: 16..70 e-value: 9.4E-14 score: 51.2
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 81..211 score: 10.943723
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 83..209

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc09g0246091.1	Cmc09g0246091.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0016020	membrane
molecular_function	GO:0003676	nucleic acid binding