Cmc09g0245781 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc09g0245781
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty1-copia retrotransposon protein
Location	CMiso1.1chr09: 9298436 .. 9299197 (-)
RNA-Seq Expression	Cmc09g0245781
Synteny	Cmc09g0245781

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGCAAATGCTTCTAGTTCTGCTTACGTGATTGAATCTGCTAACTTATGGCATGGTAGATTAGGACATGTGAACTTTGCATCAATTAGAAAACTTAAAGACTTGAGACTCATTAATACTTCTGAGTCGCATGAAACTGGTAAATGCCCCATTTGTGTAGAAAGTAAATTCTATAAGAAGCCTTTCAAACCAGTTGAATATAGAACTACTAACATGTTAGAATTAATTCACTCGGATCTAGCCGATTTTAGAACCACTACTAGTAAAGGTGGTAAAAACTACTATGTATCCTTTGTTGATGATTACTCTAGATTCACTAAGATATACCTGATAAAAACAAAAAATGAAGCTGTTAGTATGTTTTTAAAATTCCAGGCAGAATTTGAGAATCAGTTCGGAAAAAGGATAAAAAGATTAAGATCAGATAGAGGTGGTGAGTATTCTGATAAAACTCTTAAAGAATTTTATGAGCCAAATGGTATCATCCATGAATTTACTGCTCCTTACTCACCACAACAAAATGGCATAGCAGAACGAAAAAACAGAACTCTTAAAGAAATGATGAATGCCATGTTATTAAGCTCCAGCCTATCTGATAATATGTGGGGGGAAGCCGTATTGTCTGCGTGTTTTATTCTTAACAGGATTCCCCACAAAAGGCTAGACAAAACTCCATACGAACTCTGGAAAGGACATGCACCAAATCTTTCCTACCTGAAGGTCTGGGATGCTTGGCTAAGGTACCATTTCCTGCATTGA

mRNA sequence

ATGAATGCAAATGCTTCTAGTTCTGCTTACGTGATTGAATCTGCTAACTTATGGCATGGTAGATTAGGACATGTGAACTTTGCATCAATTAGAAAACTTAAAGACTTGAGACTCATTAATACTTCTGAGTCGCATGAAACTGGTAAATGCCCCATTTGTGTAGAAAGTAAATTCTATAAGAAGCCTTTCAAACCAGTTGAATATAGAACTACTAACATGTTAGAATTAATTCACTCGGATCTAGCCGATTTTAGAACCACTACTAGTAAAGGTGGTAAAAACTACTATGTATCCTTTGTTGATGATTACTCTAGATTCACTAAGATATACCTGATAAAAACAAAAAATGAAGCTGTTAGTATGTTTTTAAAATTCCAGGCAGAATTTGAGAATCAGTTCGGAAAAAGGATAAAAAGATTAAGATCAGATAGAGGTGGTGAGTATTCTGATAAAACTCTTAAAGAATTTTATGAGCCAAATGGTATCATCCATGAATTTACTGCTCCTTACTCACCACAACAAAATGGCATAGCAGAACGAAAAAACAGAACTCTTAAAGAAATGATGAATGCCATGTTATTAAGCTCCAGCCTATCTGATAATATGTGGGGGGAAGCCGTATTGTCTGCGTGTTTTATTCTTAACAGGATTCCCCACAAAAGGCTAGACAAAACTCCATACGAACTCTGGAAAGGACATGCACCAAATCTTTCCTACCTGAAGGTCTGGGATGCTTGGCTAAGGTACCATTTCCTGCATTGA

Coding sequence (CDS)

ATGAATGCAAATGCTTCTAGTTCTGCTTACGTGATTGAATCTGCTAACTTATGGCATGGTAGATTAGGACATGTGAACTTTGCATCAATTAGAAAACTTAAAGACTTGAGACTCATTAATACTTCTGAGTCGCATGAAACTGGTAAATGCCCCATTTGTGTAGAAAGTAAATTCTATAAGAAGCCTTTCAAACCAGTTGAATATAGAACTACTAACATGTTAGAATTAATTCACTCGGATCTAGCCGATTTTAGAACCACTACTAGTAAAGGTGGTAAAAACTACTATGTATCCTTTGTTGATGATTACTCTAGATTCACTAAGATATACCTGATAAAAACAAAAAATGAAGCTGTTAGTATGTTTTTAAAATTCCAGGCAGAATTTGAGAATCAGTTCGGAAAAAGGATAAAAAGATTAAGATCAGATAGAGGTGGTGAGTATTCTGATAAAACTCTTAAAGAATTTTATGAGCCAAATGGTATCATCCATGAATTTACTGCTCCTTACTCACCACAACAAAATGGCATAGCAGAACGAAAAAACAGAACTCTTAAAGAAATGATGAATGCCATGTTATTAAGCTCCAGCCTATCTGATAATATGTGGGGGGAAGCCGTATTGTCTGCGTGTTTTATTCTTAACAGGATTCCCCACAAAAGGCTAGACAAAACTCCATACGAACTCTGGAAAGGACATGCACCAAATCTTTCCTACCTGAAGGTCTGGGATGCTTGGCTAAGGTACCATTTCCTGCATTGA

Protein sequence

MNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFYKKPFKPVEYRTTNMLELIHSDLADFRTTTSKGGKNYYVSFVDDYSRFTKIYLIKTKNEAVSMFLKFQAEFENQFGKRIKRLRSDRGGEYSDKTLKEFYEPNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSSLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYLKVWDAWLRYHFLH

Homology

[Close]

BLAST of Cmc09g0245781 vs. NCBI nr
Match: TYK04394.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 470.3 bits (1209), Expect = 1.0e-128
Identity = 226/243 (93.00%), Postives = 236/243 (97.12%), Query Frame = 0


Query: 1   MNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFYK 60
           MNANASSSAY+IESANLWHGRLGHVNFASIRKLKD+RLINTSE+HETGKCPIC+ESKF+K
Sbjct: 451 MNANASSSAYLIESANLWHGRLGHVNFASIRKLKDMRLINTSETHETGKCPICIESKFHK 510

Query: 61  KPFKPVEYRTTNMLELIHSDLADFRTTTSKGGKNYYVSFVDDYSRFTKIYLIKTKNEAVS 120
           KPFKPVEYRTT +LELIHSDLADFRTT S+GGKNYYVSFVDDYSRFTKIYLI+TKNEAVS
Sbjct: 511 KPFKPVEYRTTELLELIHSDLADFRTTASRGGKNYYVSFVDDYSRFTKIYLIRTKNEAVS 570

Query: 121 MFLKFQAEFENQFGKRIKRLRSDRGGEYSDKTLKEFYEPNGIIHEFTAPYSPQQNGIAER 180
           MF+KF+AE ENQ GKRIKRLRSDRGGEYSDKTLKEF E NGIIHEFTAPYSPQQNGIAER
Sbjct: 571 MFVKFKAESENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER 630

Query: 181 KNRTLKEMMNAMLLSSSLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL 240
           KNRTLKEMMNAMLLSS LSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL
Sbjct: 631 KNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL 690

Query: 241 KVW 244
           KVW
Sbjct: 691 KVW 693

[Close]

BLAST of Cmc09g0245781 vs. NCBI nr
Match: KAA0066784.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 468.8 bits (1205), Expect = 3.0e-128
Identity = 225/243 (92.59%), Postives = 236/243 (97.12%), Query Frame = 0


Query: 1   MNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFYK 60
           MNANASSSAY+IESANLWHGRLGHVNFASIRKLKD+RLINTSE+HETGKCP+C+ESKF+K
Sbjct: 451 MNANASSSAYLIESANLWHGRLGHVNFASIRKLKDMRLINTSETHETGKCPVCIESKFHK 510

Query: 61  KPFKPVEYRTTNMLELIHSDLADFRTTTSKGGKNYYVSFVDDYSRFTKIYLIKTKNEAVS 120
           KPFKPVEYRTT +LELI+SDLADFRTT S+GGKNYYVSFVDDYSRFTKIYLIKTKNEAVS
Sbjct: 511 KPFKPVEYRTTELLELIYSDLADFRTTASRGGKNYYVSFVDDYSRFTKIYLIKTKNEAVS 570

Query: 121 MFLKFQAEFENQFGKRIKRLRSDRGGEYSDKTLKEFYEPNGIIHEFTAPYSPQQNGIAER 180
           MF+KF+AE ENQ GKRIKRLRSDRGGEYSDKTLKEF E NGIIHEFTAPYSPQQNGIAER
Sbjct: 571 MFVKFKAESENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER 630

Query: 181 KNRTLKEMMNAMLLSSSLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL 240
           KNRTLKEMMNAMLLSS LSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL
Sbjct: 631 KNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL 690

Query: 241 KVW 244
           KVW
Sbjct: 691 KVW 693

[Close]

BLAST of Cmc09g0245781 vs. NCBI nr
Match: ADN33807.1 (ty1-copia retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 468.8 bits (1205), Expect = 3.0e-128
Identity = 225/243 (92.59%), Postives = 236/243 (97.12%), Query Frame = 0


Query: 1   MNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFYK 60
           MNANASSSAY+IESANLWHGRLGHVNFASIRKLKD+RLINTSE+HETGKCP+C+ESKF+K
Sbjct: 451 MNANASSSAYLIESANLWHGRLGHVNFASIRKLKDMRLINTSETHETGKCPVCIESKFHK 510

Query: 61  KPFKPVEYRTTNMLELIHSDLADFRTTTSKGGKNYYVSFVDDYSRFTKIYLIKTKNEAVS 120
           KPFKPVEYRTT +LELI+SDLADFRTT S+GGKNYYVSFVDDYSRFTKIYLIKTKNEAVS
Sbjct: 511 KPFKPVEYRTTELLELIYSDLADFRTTASRGGKNYYVSFVDDYSRFTKIYLIKTKNEAVS 570

Query: 121 MFLKFQAEFENQFGKRIKRLRSDRGGEYSDKTLKEFYEPNGIIHEFTAPYSPQQNGIAER 180
           MF+KF+AE ENQ GKRIKRLRSDRGGEYSDKTLKEF E NGIIHEFTAPYSPQQNGIAER
Sbjct: 571 MFVKFKAESENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER 630

Query: 181 KNRTLKEMMNAMLLSSSLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL 240
           KNRTLKEMMNAMLLSS LSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL
Sbjct: 631 KNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL 690

Query: 241 KVW 244
           KVW
Sbjct: 691 KVW 693

[Close]

BLAST of Cmc09g0245781 vs. NCBI nr
Match: TYK11299.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 468.4 bits (1204), Expect = 3.9e-128
Identity = 226/243 (93.00%), Postives = 235/243 (96.71%), Query Frame = 0


Query: 1   MNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFYK 60
           MNANASSSAY+IESANLWHGRLGHVNFASIRKLKD+RLINTSE+HETGKC IC+ESKF+K
Sbjct: 388 MNANASSSAYLIESANLWHGRLGHVNFASIRKLKDMRLINTSETHETGKCSICIESKFHK 447

Query: 61  KPFKPVEYRTTNMLELIHSDLADFRTTTSKGGKNYYVSFVDDYSRFTKIYLIKTKNEAVS 120
           KPFKPVEYRTT +LELIHSDLADFRTT S+GGKNYYVSFVDDYSRFTKIYLIKTKNEAVS
Sbjct: 448 KPFKPVEYRTTELLELIHSDLADFRTTASRGGKNYYVSFVDDYSRFTKIYLIKTKNEAVS 507

Query: 121 MFLKFQAEFENQFGKRIKRLRSDRGGEYSDKTLKEFYEPNGIIHEFTAPYSPQQNGIAER 180
           MF+KF+AE ENQ GKRIKRLRSDRGGEYSDKTLKEF E NGIIHEFTAPYSPQQNGIAER
Sbjct: 508 MFVKFKAESENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER 567

Query: 181 KNRTLKEMMNAMLLSSSLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL 240
           KNRTLKEMMNAMLLSS LSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL
Sbjct: 568 KNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL 627

Query: 241 KVW 244
           KVW
Sbjct: 628 KVW 630

[Close]

BLAST of Cmc09g0245781 vs. NCBI nr
Match: TYK27931.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 467.2 bits (1201), Expect = 8.8e-128
Identity = 225/243 (92.59%), Postives = 235/243 (96.71%), Query Frame = 0


Query: 1   MNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFYK 60
           MNANASSSAY+IESANLWHGRLGHVNFASIRKLKD+RLINTSE+HETGKC IC+ESKF+K
Sbjct: 451 MNANASSSAYLIESANLWHGRLGHVNFASIRKLKDMRLINTSETHETGKCSICIESKFHK 510

Query: 61  KPFKPVEYRTTNMLELIHSDLADFRTTTSKGGKNYYVSFVDDYSRFTKIYLIKTKNEAVS 120
           KPFKPVEYRTT +LELIHSDLADFRTT S+GGKNYYVSFVDDYSRFTKIYLI+TKNEAVS
Sbjct: 511 KPFKPVEYRTTELLELIHSDLADFRTTASRGGKNYYVSFVDDYSRFTKIYLIRTKNEAVS 570

Query: 121 MFLKFQAEFENQFGKRIKRLRSDRGGEYSDKTLKEFYEPNGIIHEFTAPYSPQQNGIAER 180
           MF+KF+AE ENQ GKRIKRLRSDRGGEYSDKTLKEF E NGIIHEFTAPYSPQQNGIAER
Sbjct: 571 MFVKFKAESENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER 630

Query: 181 KNRTLKEMMNAMLLSSSLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL 240
           KNRTLKEMMNAMLLSS LSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL
Sbjct: 631 KNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL 690

Query: 241 KVW 244
           KVW
Sbjct: 691 KVW 693

[Close]

BLAST of Cmc09g0245781 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 4.8e-44
Identity = 88/231 (38.10%), Postives = 140/231 (60.61%), Query Frame = 0


Query: 14  SANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFYKKPFKPVEYRTTNM 73
           S +LWH R+GH++   ++ L    LI+ ++      C  C+  K ++  F+    R  N+
Sbjct: 421 SVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNI 480

Query: 74  LELIHSDLADFRTTTSKGGKNYYVSFVDDYSRFTKIYLIKTKNEAVSMFLKFQAEFENQF 133
           L+L++SD+       S GG  Y+V+F+DD SR   +Y++KTK++   +F KF A  E + 
Sbjct: 481 LDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERET 540

Query: 134 GKRIKRLRSDRGGEYSDKTLKEFYEPNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAML 193
           G+++KRLRSD GGEY+ +  +E+   +GI HE T P +PQ NG+AER NRT+ E + +ML
Sbjct: 541 GRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSML 600

Query: 194 LSSSLSDNMWGEAVLSACFILNRIPHKRLD-KTPYELWKGHAPNLSYLKVW 244
             + L  + WGEAV +AC+++NR P   L  + P  +W     + S+LKV+
Sbjct: 601 RMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVF 651

[Close]

BLAST of Cmc09g0245781 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 157.1 bits (396), Expect = 2.5e-37
Identity = 87/245 (35.51%), Postives = 133/245 (54.29%), Query Frame = 0


Query: 17  LWHGRLGHVNFASIRKLK------DLRLINTSESHETGKCPICVESKFYKKPFKPVEYRT 76
           LWH R GH++   + ++K      D  L+N  E      C  C+  K  + PFK ++ +T
Sbjct: 417 LWHERFGHISDGKLLEIKRKNMFSDQSLLNNLEL-SCEICEPCLNGKQARLPFKQLKDKT 476

Query: 77  --TNMLELIHSDLADFRTTTSKGGKNYYVSFVDDYSRFTKIYLIKTKNEAVSMFLKFQAE 136
                L ++HSD+    T  +   KNY+V FVD ++ +   YLIK K++  SMF  F A+
Sbjct: 477 HIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAK 536

Query: 137 FENQFGKRIKRLRSDRGGEYSDKTLKEFYEPNGIIHEFTAPYSPQQNGIAERKNRTLKEM 196
            E  F  ++  L  D G EY    +++F    GI +  T P++PQ NG++ER  RT+ E 
Sbjct: 537 SEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSERMIRTITEK 596

Query: 197 MNAMLLSSSLSDNMWGEAVLSACFILNRIPHKRL---DKTPYELWKGHAPNLSYLKVWDA 251
              M+  + L  + WGEAVL+A +++NRIP + L    KTPYE+W    P L +L+V+ A
Sbjct: 597 ARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMWHNKKPYLKHLRVFGA 656

[Close]

BLAST of Cmc09g0245781 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.4e-29
Identity = 80/242 (33.06%), Postives = 129/242 (53.31%), Query Frame = 0


Query: 18  WHGRLGHVNFASIRK-LKDLRLINTSESHETGKCPICVESKFYKKPFKPVEYRTTNMLEL 77
           WH RLGH + A +   + +  L   + SH+   C  C  +K +K PF      ++  LE 
Sbjct: 446 WHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEY 505

Query: 78  IHSDLADFRTTTSKGGKNYYVSFVDDYSRFTKIYLIKTKNEAVSMFLKFQAEFENQFGKR 137
           I+SD+       S     YYV FVD ++R+T +Y +K K++    F+ F++  EN+F  R
Sbjct: 506 IYSDVWS-SPILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTR 565

Query: 138 IKRLRSDRGGEYSDKTLKEFYEPNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSS 197
           I  L SD GGE+    L+++   +GI H  + P++P+ NG++ERK+R + EM   +L  +
Sbjct: 566 IGTLYSDNGGEF--VVLRDYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLSHA 625

Query: 198 SLSDNMWGEAVLSACFILNRIPHKRLD-KTPYELWKGHAPNLSYLKVWDA----WLRYHF 254
           S+    W  A   A +++NR+P   L  ++P++   G  PN   LKV+      WLR + 
Sbjct: 626 SVPKTYWPYAFSVAVYLINRLPTPLLQLQSPFQKLFGQPPNYEKLKVFGCACYPWLRPYN 684

[Close]

BLAST of Cmc09g0245781 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 8.2e-28
Identity = 82/255 (32.16%), Postives = 132/255 (51.76%), Query Frame = 0


Query: 5   ASSSAYVIESANLWHGRLGHVNFASIRK-LKDLRLINTSESHETGKCPICVESKFYKKPF 64
           AS S+    S+  WH RLGH   + +   + +  L   + SH+   C  C+ +K  K PF
Sbjct: 456 ASPSSKATHSS--WHARLGHPAPSILNSVISNYSLSVLNPSHKFLSCSDCLINKSNKVPF 515

Query: 65  KPVEYRTTNMLELIHSDLADFRTTTSKGGKNYYVSFVDDYSRFTKIYLIKTKNEAVSMFL 124
                 +T  LE I+SD+       S     YYV FVD ++R+T +Y +K K++    F+
Sbjct: 516 SQSTINSTRPLEYIYSDVWS-SPILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFI 575

Query: 125 KFQAEFENQFGKRIKRLRSDRGGEYSDKTLKEFYEPNGIIHEFTAPYSPQQNGIAERKNR 184
            F+   EN+F  RI    SD GGE+    L E++  +GI H  + P++P+ NG++ERK+R
Sbjct: 576 TFKNLLENRFQTRIGTFYSDNGGEF--VALWEYFSQHGISHLTSPPHTPEHNGLSERKHR 635

Query: 185 TLKEMMNAMLLSSSLSDNMWGEAVLSACFILNRIPHKRLD-KTPYELWKGHAPNLSYLKV 244
            + E    +L  +S+    W  A   A +++NR+P   L  ++P++   G +PN   L+V
Sbjct: 636 HIVETGLTLLSHASIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKLFGTSPNYDKLRV 695

Query: 245 WDA----WLRYHFLH 254
           +      WLR +  H
Sbjct: 696 FGCACYPWLRPYNQH 705

[Close]

BLAST of Cmc09g0245781 vs. ExPASy Swiss-Prot
Match: Q12491 (Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-B PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.3e-20
Identity = 69/230 (30.00%), Postives = 112/230 (48.70%), Query Frame = 0


Query: 17  LWHGRLGHVNFASIRK-LKDLRLINTSESH------ETGKCPICVESKF----------- 76
           L H  LGH NF SI+K LK   +    ES        T +CP C+  K            
Sbjct: 593 LIHRMLGHANFRSIQKSLKKNAVTYLKESDIEWSNASTYQCPDCLIGKSTKHRHVKGSRL 652

Query: 77  -YKKPFKPVEYRTTNMLELIHSDLADFRTTTSKGGKNYYVSFVDDYSRFTKIYLIKTKNE 136
            Y++ ++P +Y  T++   +H           K   +Y++SF D+ +RF  +Y +  + E
Sbjct: 653 KYQESYEPFQYLHTDIFGPVHH--------LPKSAPSYFISFTDEKTRFQWVYPLHDRRE 712

Query: 137 --AVSMFLKFQAEFENQFGKRIKRLRSDRGGEYSDKTLKEFYEPNGIIHEFTAPYSPQQN 196
              +++F    A  +NQF  R+  ++ DRG EY++KTL +F+   GI   +T     + +
Sbjct: 713 ESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAH 772

Query: 197 GIAERKNRTLKEMMNAMLLSSSLSDNMWGEAVLSACFILNRIPHKRLDKT 226
           G+AER NRTL      +L  S L +++W  AV  +  I N +   + DK+
Sbjct: 773 GVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSLVSPKNDKS 814

[Close]

BLAST of Cmc09g0245781 vs. ExPASy TrEMBL
Match: A0A5D3BZI1 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold675G00770 PE=4 SV=1)

HSP 1 Score: 470.3 bits (1209), Expect = 5.0e-129
Identity = 226/243 (93.00%), Postives = 236/243 (97.12%), Query Frame = 0


Query: 1   MNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFYK 60
           MNANASSSAY+IESANLWHGRLGHVNFASIRKLKD+RLINTSE+HETGKCPIC+ESKF+K
Sbjct: 451 MNANASSSAYLIESANLWHGRLGHVNFASIRKLKDMRLINTSETHETGKCPICIESKFHK 510

Query: 61  KPFKPVEYRTTNMLELIHSDLADFRTTTSKGGKNYYVSFVDDYSRFTKIYLIKTKNEAVS 120
           KPFKPVEYRTT +LELIHSDLADFRTT S+GGKNYYVSFVDDYSRFTKIYLI+TKNEAVS
Sbjct: 511 KPFKPVEYRTTELLELIHSDLADFRTTASRGGKNYYVSFVDDYSRFTKIYLIRTKNEAVS 570

Query: 121 MFLKFQAEFENQFGKRIKRLRSDRGGEYSDKTLKEFYEPNGIIHEFTAPYSPQQNGIAER 180
           MF+KF+AE ENQ GKRIKRLRSDRGGEYSDKTLKEF E NGIIHEFTAPYSPQQNGIAER
Sbjct: 571 MFVKFKAESENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER 630

Query: 181 KNRTLKEMMNAMLLSSSLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL 240
           KNRTLKEMMNAMLLSS LSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL
Sbjct: 631 KNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL 690

Query: 241 KVW 244
           KVW
Sbjct: 691 KVW 693

[Close]

BLAST of Cmc09g0245781 vs. ExPASy TrEMBL
Match: A0A5A7VHG8 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G001260 PE=4 SV=1)

HSP 1 Score: 468.8 bits (1205), Expect = 1.5e-128
Identity = 225/243 (92.59%), Postives = 236/243 (97.12%), Query Frame = 0


Query: 1   MNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFYK 60
           MNANASSSAY+IESANLWHGRLGHVNFASIRKLKD+RLINTSE+HETGKCP+C+ESKF+K
Sbjct: 451 MNANASSSAYLIESANLWHGRLGHVNFASIRKLKDMRLINTSETHETGKCPVCIESKFHK 510

Query: 61  KPFKPVEYRTTNMLELIHSDLADFRTTTSKGGKNYYVSFVDDYSRFTKIYLIKTKNEAVS 120
           KPFKPVEYRTT +LELI+SDLADFRTT S+GGKNYYVSFVDDYSRFTKIYLIKTKNEAVS
Sbjct: 511 KPFKPVEYRTTELLELIYSDLADFRTTASRGGKNYYVSFVDDYSRFTKIYLIKTKNEAVS 570

Query: 121 MFLKFQAEFENQFGKRIKRLRSDRGGEYSDKTLKEFYEPNGIIHEFTAPYSPQQNGIAER 180
           MF+KF+AE ENQ GKRIKRLRSDRGGEYSDKTLKEF E NGIIHEFTAPYSPQQNGIAER
Sbjct: 571 MFVKFKAESENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER 630

Query: 181 KNRTLKEMMNAMLLSSSLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL 240
           KNRTLKEMMNAMLLSS LSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL
Sbjct: 631 KNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL 690

Query: 241 KVW 244
           KVW
Sbjct: 691 KVW 693

[Close]

BLAST of Cmc09g0245781 vs. ExPASy TrEMBL
Match: E5GBG5 (Ty1-copia retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 468.8 bits (1205), Expect = 1.5e-128
Identity = 225/243 (92.59%), Postives = 236/243 (97.12%), Query Frame = 0


Query: 1   MNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFYK 60
           MNANASSSAY+IESANLWHGRLGHVNFASIRKLKD+RLINTSE+HETGKCP+C+ESKF+K
Sbjct: 451 MNANASSSAYLIESANLWHGRLGHVNFASIRKLKDMRLINTSETHETGKCPVCIESKFHK 510

Query: 61  KPFKPVEYRTTNMLELIHSDLADFRTTTSKGGKNYYVSFVDDYSRFTKIYLIKTKNEAVS 120
           KPFKPVEYRTT +LELI+SDLADFRTT S+GGKNYYVSFVDDYSRFTKIYLIKTKNEAVS
Sbjct: 511 KPFKPVEYRTTELLELIYSDLADFRTTASRGGKNYYVSFVDDYSRFTKIYLIKTKNEAVS 570

Query: 121 MFLKFQAEFENQFGKRIKRLRSDRGGEYSDKTLKEFYEPNGIIHEFTAPYSPQQNGIAER 180
           MF+KF+AE ENQ GKRIKRLRSDRGGEYSDKTLKEF E NGIIHEFTAPYSPQQNGIAER
Sbjct: 571 MFVKFKAESENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER 630

Query: 181 KNRTLKEMMNAMLLSSSLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL 240
           KNRTLKEMMNAMLLSS LSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL
Sbjct: 631 KNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL 690

Query: 241 KVW 244
           KVW
Sbjct: 691 KVW 693

[Close]

BLAST of Cmc09g0245781 vs. ExPASy TrEMBL
Match: A0A5D3CM58 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1827G00040 PE=4 SV=1)

HSP 1 Score: 468.4 bits (1204), Expect = 1.9e-128
Identity = 226/243 (93.00%), Postives = 235/243 (96.71%), Query Frame = 0


Query: 1   MNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFYK 60
           MNANASSSAY+IESANLWHGRLGHVNFASIRKLKD+RLINTSE+HETGKC IC+ESKF+K
Sbjct: 388 MNANASSSAYLIESANLWHGRLGHVNFASIRKLKDMRLINTSETHETGKCSICIESKFHK 447

Query: 61  KPFKPVEYRTTNMLELIHSDLADFRTTTSKGGKNYYVSFVDDYSRFTKIYLIKTKNEAVS 120
           KPFKPVEYRTT +LELIHSDLADFRTT S+GGKNYYVSFVDDYSRFTKIYLIKTKNEAVS
Sbjct: 448 KPFKPVEYRTTELLELIHSDLADFRTTASRGGKNYYVSFVDDYSRFTKIYLIKTKNEAVS 507

Query: 121 MFLKFQAEFENQFGKRIKRLRSDRGGEYSDKTLKEFYEPNGIIHEFTAPYSPQQNGIAER 180
           MF+KF+AE ENQ GKRIKRLRSDRGGEYSDKTLKEF E NGIIHEFTAPYSPQQNGIAER
Sbjct: 508 MFVKFKAESENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER 567

Query: 181 KNRTLKEMMNAMLLSSSLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL 240
           KNRTLKEMMNAMLLSS LSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL
Sbjct: 568 KNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL 627

Query: 241 KVW 244
           KVW
Sbjct: 628 KVW 630

[Close]

BLAST of Cmc09g0245781 vs. ExPASy TrEMBL
Match: A0A5D3C1A6 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G00490 PE=4 SV=1)

HSP 1 Score: 467.2 bits (1201), Expect = 4.3e-128
Identity = 225/243 (92.59%), Postives = 235/243 (96.71%), Query Frame = 0


Query: 1   MNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFYK 60
           MNANASSSAY+IESANLWHGRLGHVNFASIRKLKD+RLINTSE+HETGKC IC+ESKF+K
Sbjct: 452 MNANASSSAYLIESANLWHGRLGHVNFASIRKLKDMRLINTSETHETGKCSICIESKFHK 511

Query: 61  KPFKPVEYRTTNMLELIHSDLADFRTTTSKGGKNYYVSFVDDYSRFTKIYLIKTKNEAVS 120
           KPFKPVEYRTT +LELIHSDLADFRTT S+GGKNYYVSFVDDYSRFTKIYLI+TKNEAVS
Sbjct: 512 KPFKPVEYRTTELLELIHSDLADFRTTASRGGKNYYVSFVDDYSRFTKIYLIRTKNEAVS 571

Query: 121 MFLKFQAEFENQFGKRIKRLRSDRGGEYSDKTLKEFYEPNGIIHEFTAPYSPQQNGIAER 180
           MF+KF+AE ENQ GKRIKRLRSDRGGEYSDKTLKEF E NGIIHEFTAPYSPQQNGIAER
Sbjct: 572 MFVKFKAESENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER 631

Query: 181 KNRTLKEMMNAMLLSSSLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL 240
           KNRTLKEMMNAMLLSS LSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL
Sbjct: 632 KNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYL 691

Query: 241 KVW 244
           KVW
Sbjct: 692 KVW 694

The following BLAST results are available for this feature:

BLAST of Cmc09g0245781 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK04394.1	1.0e-128	93.00	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0066784.1	3.0e-128	92.59	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
ADN33807.1	3.0e-128	92.59	ty1-copia retrotransposon protein [Cucumis melo subsp. melo]	[more]
TYK11299.1	3.9e-128	93.00	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK27931.1	8.8e-128	92.59	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc09g0245781 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	4.8e-44	38.10	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	2.5e-37	35.51	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	4.4e-29	33.06	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	8.2e-28	32.16	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q12491	1.3e-20	30.00	Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc09g0245781 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BZI1	5.0e-129	93.00	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7VHG8	1.5e-128	92.59	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
E5GBG5	1.5e-128	92.59	Ty1-copia retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=...	[more]
A0A5D3CM58	1.9e-128	93.00	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3C1A6	4.3e-128	92.59	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Cmc09g0245781 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 4..57 e-value: 9.5E-11 score: 41.4
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 67..244 e-value: 1.0E-45 score: 157.5
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 73..172 e-value: 1.9E-14 score: 53.8
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 61..234 score: 25.129093
None	No IPR available	PANTHER	PTHR11439:SF324	RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN, GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 16..218
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 16..218
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 75..242

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc09g0245781.1	Cmc09g0245781.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding