Cmc09g0245671 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc09g0245671
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	CMiso1.1chr09: 9209755 .. 9210261 (+)
RNA-Seq Expression	Cmc09g0245671
Synteny	Cmc09g0245671

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGAAGAAATGACAGCTATTAAGAAGAATGGAACATGGAAAATGGTAGACTTACCGGAAGGAAAAAATGTAATTAGCTTGAAGTGGGTGTATAAGACGAAATTTGTTGCAGATGGGAGTTTAGATCAGAAGCACAAAGCTCATCTTGTGGCAAAAGGATATGCACAACAACATGGTATTGATTTCGAGGAAACTTTCTCTCTTGTAGCTCGTTTCGAAACCGTGAGGATTGTTCTAGCATTGGTAGCACAACAACAATGGCTCGTCTATCAATTTGATGTCAAGTCAGCCTTTCTTAATGGAGAACTGCAAGAAGAAGTCTATGTTGAACAACCGGAAGGTTTTGTTAAAAAGGACAGCAAAGAAAAAATGTATAAGTTAACAAAGGCGTTGTATGGGTTGAAACAAGCTCCTCGGGCGTGGTATAGCAAAATCGACGGATATTTTCATCAAAATGGATTCAAAATGAGTGAAAATGAGCCTATATGTGAAAAAAGGAGGTAA

mRNA sequence

ATGAAGGAAGAAATGACAGCTATTAAGAAGAATGGAACATGGAAAATGGTAGACTTACCGGAAGGAAAAAATGTAATTAGCTTGAAGTGGGTGTATAAGACGAAATTTGTTGCAGATGGGAGTTTAGATCAGAAGCACAAAGCTCATCTTGTGGCAAAAGGATATGCACAACAACATGGTATTGATTTCGAGGAAACTTTCTCTCTTGTAGCTCGTTTCGAAACCGTGAGGATTGTTCTAGCATTGGTAGCACAACAACAATGGCTCGTCTATCAATTTGATGTCAAGTCAGCCTTTCTTAATGGAGAACTGCAAGAAGAAGTCTATGTTGAACAACCGGAAGGTTTTGTTAAAAAGGACAGCAAAGAAAAAATGTATAAGTTAACAAAGGCGTTGTATGGGTTGAAACAAGCTCCTCGGGCGTGGTATAGCAAAATCGACGGATATTTTCATCAAAATGGATTCAAAATGAGTGAAAATGAGCCTATATGTGAAAAAAGGAGGTAA

Coding sequence (CDS)

ATGAAGGAAGAAATGACAGCTATTAAGAAGAATGGAACATGGAAAATGGTAGACTTACCGGAAGGAAAAAATGTAATTAGCTTGAAGTGGGTGTATAAGACGAAATTTGTTGCAGATGGGAGTTTAGATCAGAAGCACAAAGCTCATCTTGTGGCAAAAGGATATGCACAACAACATGGTATTGATTTCGAGGAAACTTTCTCTCTTGTAGCTCGTTTCGAAACCGTGAGGATTGTTCTAGCATTGGTAGCACAACAACAATGGCTCGTCTATCAATTTGATGTCAAGTCAGCCTTTCTTAATGGAGAACTGCAAGAAGAAGTCTATGTTGAACAACCGGAAGGTTTTGTTAAAAAGGACAGCAAAGAAAAAATGTATAAGTTAACAAAGGCGTTGTATGGGTTGAAACAAGCTCCTCGGGCGTGGTATAGCAAAATCGACGGATATTTTCATCAAAATGGATTCAAAATGAGTGAAAATGAGCCTATATGTGAAAAAAGGAGGTAA

Protein sequence

MKEEMTAIKKNGTWKMVDLPEGKNVISLKWVYKTKFVADGSLDQKHKAHLVAKGYAQQHGIDFEETFSLVARFETVRIVLALVAQQQWLVYQFDVKSAFLNGELQEEVYVEQPEGFVKKDSKEKMYKLTKALYGLKQAPRAWYSKIDGYFHQNGFKMSENEPICEKRR

Homology

[Close]

BLAST of Cmc09g0245671 vs. NCBI nr
Match: KAA0033341.1 (putative gag-pol polyprotein, identical [Cucumis melo var. makuwa])

HSP 1 Score: 278.1 bits (710), Expect = 5.0e-71
Identity = 139/162 (85.80%), Postives = 146/162 (90.12%), Query Frame = 0


Query: 1   MKEEMTAIKKNGTWKMVDLPEGKNVISLKWVYKTKFVADGSLDQKHKAHLVAKGYAQQHG 60
           MKEEM AI+KNGTWK+VDL EGKN I LKWVYKTKF ADGSL +KHKA LVAKGYAQQHG
Sbjct: 423 MKEEMKAIEKNGTWKIVDLLEGKNAIGLKWVYKTKFAADGSL-EKHKARLVAKGYAQQHG 482

Query: 61  IDFEETFSLVARFETVRIVLALVAQQQWLVYQFDVKSAFLNGELQEEVYVEQPEGFVKKD 120
           IDFEETFSLVARFETVRIVLA   QQQW VYQFDVKS FLNGELQEEVYVEQP+GFVKKD
Sbjct: 483 IDFEETFSLVARFETVRIVLAFATQQQWPVYQFDVKSVFLNGELQEEVYVEQPKGFVKKD 542

Query: 121 SKEKMYKLTKALYGLKQAPRAWYSKIDGYFHQNGFKMSENEP 163
           ++EK+YKLTKALYGLKQAPRAWYSKID YF QNGFK S NEP
Sbjct: 543 NEEKVYKLTKALYGLKQAPRAWYSKIDEYFQQNGFKRSANEP 583

[Close]

BLAST of Cmc09g0245671 vs. NCBI nr
Match: KAA0054939.1 (putative gag-pol polyprotein, identical [Cucumis melo var. makuwa] >TYK22728.1 putative gag-pol polyprotein, identical [Cucumis melo var. makuwa])

HSP 1 Score: 265.8 bits (678), Expect = 2.6e-67
Identity = 132/147 (89.80%), Postives = 139/147 (94.56%), Query Frame = 0


Query: 1   MKEEMTAIKKNGTWKMVDLPEGKNVISLKWVYKTKFVADGSLDQKHKAHLVAKGYAQQHG 60
           MKEEM AI+KNGTWKMVDLPEGKN I LKWVYK+KF ADGSL +KHKAHLVAKG+AQQHG
Sbjct: 452 MKEEMAAIEKNGTWKMVDLPEGKNAIGLKWVYKSKFAADGSL-EKHKAHLVAKGHAQQHG 511

Query: 61  IDFEETFSLVARFETVRIVLALVAQQQWLVYQFDVKSAFLNGELQEEVYVEQPEGFVKKD 120
           IDFEETFS+VARFETVRIVLAL AQQQW VYQFDVK AFLNGELQEEVYVEQPEGFVKKD
Sbjct: 512 IDFEETFSIVARFETVRIVLALAAQQQWSVYQFDVKPAFLNGELQEEVYVEQPEGFVKKD 571

Query: 121 SKEKMYKLTKALYGLKQAPRAWYSKID 148
           S+EK+YKLTKALYGLKQAPRAWYSKID
Sbjct: 572 SEEKVYKLTKALYGLKQAPRAWYSKID 597

[Close]

BLAST of Cmc09g0245671 vs. NCBI nr
Match: TYK27736.1 (putative gag-pol polyprotein, identical [Cucumis melo var. makuwa])

HSP 1 Score: 252.7 bits (644), Expect = 2.3e-63
Identity = 127/147 (86.39%), Postives = 133/147 (90.48%), Query Frame = 0


Query: 16  MVDLPEGKNVISLKWVYKTKFVADGSLDQKHKAHLVAKGYAQQHGIDFEETFSLVARFET 75
           MVDLPEGKN I LKWVYK+KF ADGSL +KHKA LVAKGYAQQHGIDFEETFS +ARFET
Sbjct: 1   MVDLPEGKNAIGLKWVYKSKFAADGSL-EKHKARLVAKGYAQQHGIDFEETFSPLARFET 60

Query: 76  VRIVLALVAQQQWLVYQFDVKSAFLNGELQEEVYVEQPEGFVKKDSKEKMYKLTKALYGL 135
           +RIVLAL  QQQW VYQFDVKSAFLNGELQEEVYVEQ EGF KKDS+EK+YKLTKALYGL
Sbjct: 61  MRIVLALAVQQQWPVYQFDVKSAFLNGELQEEVYVEQLEGFDKKDSEEKVYKLTKALYGL 120

Query: 136 KQAPRAWYSKIDGYFHQNGFKMSENEP 163
           KQAPRAWYSKIDGYF QNGFK S NEP
Sbjct: 121 KQAPRAWYSKIDGYFQQNGFKRSANEP 146

[Close]

BLAST of Cmc09g0245671 vs. NCBI nr
Match: KAA0056051.1 (putative gag-pol polyprotein, identical [Cucumis melo var. makuwa])

HSP 1 Score: 250.8 bits (639), Expect = 8.6e-63
Identity = 127/147 (86.39%), Postives = 133/147 (90.48%), Query Frame = 0


Query: 16  MVDLPEGKNVISLKWVYKTKFVADGSLDQKHKAHLVAKGYAQQHGIDFEETFSLVARFET 75
           MVDLPEGK  I LKWVYK+KF ADGSL +KHKA LVAKGYAQQHGIDFEETFS +ARFET
Sbjct: 1   MVDLPEGKKAIGLKWVYKSKFAADGSL-EKHKACLVAKGYAQQHGIDFEETFSPLARFET 60

Query: 76  VRIVLALVAQQQWLVYQFDVKSAFLNGELQEEVYVEQPEGFVKKDSKEKMYKLTKALYGL 135
           +RIVLAL AQQQW VYQFDVKSAFLNGELQEEVYVEQ EGF KKDS+EK+YKLTKALYGL
Sbjct: 61  MRIVLALAAQQQWPVYQFDVKSAFLNGELQEEVYVEQLEGFDKKDSEEKVYKLTKALYGL 120

Query: 136 KQAPRAWYSKIDGYFHQNGFKMSENEP 163
           KQAPRAWYSKIDGYF QNGFK S NEP
Sbjct: 121 KQAPRAWYSKIDGYFQQNGFKRSANEP 146

[Close]

BLAST of Cmc09g0245671 vs. NCBI nr
Match: KAA0059765.1 (integrase [Cucumis melo var. makuwa] >TYJ99778.1 integrase [Cucumis melo var. makuwa])

HSP 1 Score: 242.7 bits (618), Expect = 2.3e-60
Identity = 124/145 (85.52%), Postives = 132/145 (91.03%), Query Frame = 0


Query: 1   MKEEMTAIKKNGTWKMVDLPEGKNVISLKWVYKTKFVADGSLDQKHKAHLVAKGYAQQHG 60
           MKEEM AI+KNGTWKMVDLPEGKN I LKWVYK+KF+ +GSL +KHKA LVAKGYAQQHG
Sbjct: 197 MKEEMAAIEKNGTWKMVDLPEGKNAIGLKWVYKSKFIVNGSL-EKHKARLVAKGYAQQHG 256

Query: 61  IDFEETFSLVARFETVRIVLALVAQQQWLVYQFDVKSAFLNGELQEEVYVEQPEGFVKKD 120
           IDFEETFS VARFETVRIVLAL AQQQW VYQFDVKSAFLNGEL+EE  VEQPEGFVKKD
Sbjct: 257 IDFEETFSPVARFETVRIVLALAAQQQWPVYQFDVKSAFLNGELEEEFCVEQPEGFVKKD 316

Query: 121 SKEKMYKLTKALYGLKQAPRAWYSK 146
           S+EK+YKLTKALYGLKQAPRA  SK
Sbjct: 317 SEEKVYKLTKALYGLKQAPRACSSK 340

[Close]

BLAST of Cmc09g0245671 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 6.4e-37
Identity = 77/162 (47.53%), Postives = 110/162 (67.90%), Query Frame = 0


Query: 1   MKEEMTAIKKNGTWKMVDLPEGKNVISLKWVYKTKFVADGSLDQKHKAHLVAKGYAQQHG 60
           M+EEM +++KNGT+K+V+LP+GK  +  KWV+K K   D  L  ++KA LV KG+ Q+ G
Sbjct: 830 MQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKL-VRYKARLVVKGFEQKKG 889

Query: 61  IDFEETFSLVARFETVRIVLALVAQQQWLVYQFDVKSAFLNGELQEEVYVEQPEGFVKKD 120
           IDF+E FS V +  ++R +L+L A     V Q DVK+AFL+G+L+EE+Y+EQPEGF    
Sbjct: 890 IDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAG 949

Query: 121 SKEKMYKLTKALYGLKQAPRAWYSKIDGYFHQNGFKMSENEP 163
            K  + KL K+LYGLKQAPR WY K D +     +  + ++P
Sbjct: 950 KKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDP 990

[Close]

BLAST of Cmc09g0245671 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 3.1e-31
Identity = 71/162 (43.83%), Postives = 102/162 (62.96%), Query Frame = 0


Query: 1    MKEEMTAIKKNGTWKMVDLPEGK-NVISLKWVYKTKFVADGSLDQKHKAHLVAKGYAQQH 60
            M  E+ A   N TW +V  P     ++  +W++  K+ +DGSL+ ++KA LVAKGY Q+ 
Sbjct: 972  MGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLN-RYKARLVAKGYNQRP 1031

Query: 61   GIDFEETFSLVARFETVRIVLALVAQQQWLVYQFDVKSAFLNGELQEEVYVEQPEGFVKK 120
            G+D+ ETFS V +  ++RIVL +   + W + Q DV +AFL G L ++VY+ QP GF+ K
Sbjct: 1032 GLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDK 1091

Query: 121  DSKEKMYKLTKALYGLKQAPRAWYSKIDGYFHQNGFKMSENE 162
            D    + KL KALYGLKQAPRAWY ++  Y    GF  S ++
Sbjct: 1092 DRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSD 1132

[Close]

BLAST of Cmc09g0245671 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 3.1e-31
Identity = 71/156 (45.51%), Postives = 100/156 (64.10%), Query Frame = 0


Query: 1    MKEEMTAIKKNGTWKMV-DLPEGKNVISLKWVYKTKFVADGSLDQKHKAHLVAKGYAQQH 60
            M  E+ A   N TW +V   P    ++  +W++  KF +DGSL+ ++KA LVAKGY Q+ 
Sbjct: 955  MGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLN-RYKARLVAKGYNQRP 1014

Query: 61   GIDFEETFSLVARFETVRIVLALVAQQQWLVYQFDVKSAFLNGELQEEVYVEQPEGFVKK 120
            G+D+ ETFS V +  ++RIVL +   + W + Q DV +AFL G L +EVY+ QP GFV K
Sbjct: 1015 GLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDK 1074

Query: 121  DSKEKMYKLTKALYGLKQAPRAWYSKIDGYFHQNGF 156
            D  + + +L KA+YGLKQAPRAWY ++  Y    GF
Sbjct: 1075 DRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTVGF 1109

[Close]

BLAST of Cmc09g0245671 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 124.4 bits (311), Expect = 1.2e-27
Identity = 63/140 (45.00%), Postives = 93/140 (66.43%), Query Frame = 0


Query: 4    EMTAIKKNGTWKMVDLPEGKNVISLKWVYKTKFVADGSLDQKHKAHLVAKGYAQQHGIDF 63
            E+ A K N TW +   PE KN++  +WV+  K+   G+   ++KA LVA+G+ Q++ ID+
Sbjct: 913  ELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGN-PIRYKARLVARGFTQKYQIDY 972

Query: 64   EETFSLVARFETVRIVLALVAQQQWLVYQFDVKSAFLNGELQEEVYVEQPEGFVKKDSKE 123
            EETF+ VAR  + R +L+LV Q    V+Q DVK+AFLNG L+EE+Y+  P+G     + +
Sbjct: 973  EETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGI--SCNSD 1032

Query: 124  KMYKLTKALYGLKQAPRAWY 144
             + KL KA+YGLKQA R W+
Sbjct: 1033 NVCKLNKAIYGLKQAARCWF 1049

[Close]

BLAST of Cmc09g0245671 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.5e-14
Identity = 43/86 (50.00%), Postives = 60/86 (69.77%), Query Frame = 0


Query: 1   MKEEMTAIKKNGTWKMVDLPEGKNVISLKWVYKTKFVADGSLDQKHKAHLVAKGYAQQHG 60
           M+EE+ A+ +N TW +V  P  +N++  KWV+KTK  +DG+LD + KA LVAKG+ Q+ G
Sbjct: 44  MQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLD-RLKARLVAKGFHQEEG 103

Query: 61  IDFEETFSLVARFETVRIVLALVAQQ 87
           I F ET+S V R  T+R +L  VAQQ
Sbjct: 104 IYFVETYSPVVRTATIRTILN-VAQQ 127

[Close]

BLAST of Cmc09g0245671 vs. ExPASy TrEMBL
Match: A0A5A7SV62 (Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G001630 PE=4 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.4e-71
Identity = 139/162 (85.80%), Postives = 146/162 (90.12%), Query Frame = 0


Query: 1   MKEEMTAIKKNGTWKMVDLPEGKNVISLKWVYKTKFVADGSLDQKHKAHLVAKGYAQQHG 60
           MKEEM AI+KNGTWK+VDL EGKN I LKWVYKTKF ADGSL +KHKA LVAKGYAQQHG
Sbjct: 423 MKEEMKAIEKNGTWKIVDLLEGKNAIGLKWVYKTKFAADGSL-EKHKARLVAKGYAQQHG 482

Query: 61  IDFEETFSLVARFETVRIVLALVAQQQWLVYQFDVKSAFLNGELQEEVYVEQPEGFVKKD 120
           IDFEETFSLVARFETVRIVLA   QQQW VYQFDVKS FLNGELQEEVYVEQP+GFVKKD
Sbjct: 483 IDFEETFSLVARFETVRIVLAFATQQQWPVYQFDVKSVFLNGELQEEVYVEQPKGFVKKD 542

Query: 121 SKEKMYKLTKALYGLKQAPRAWYSKIDGYFHQNGFKMSENEP 163
           ++EK+YKLTKALYGLKQAPRAWYSKID YF QNGFK S NEP
Sbjct: 543 NEEKVYKLTKALYGLKQAPRAWYSKIDEYFQQNGFKRSANEP 583

[Close]

BLAST of Cmc09g0245671 vs. ExPASy TrEMBL
Match: A0A5A7UN91 (Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00520 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 1.2e-67
Identity = 132/147 (89.80%), Postives = 139/147 (94.56%), Query Frame = 0


Query: 1   MKEEMTAIKKNGTWKMVDLPEGKNVISLKWVYKTKFVADGSLDQKHKAHLVAKGYAQQHG 60
           MKEEM AI+KNGTWKMVDLPEGKN I LKWVYK+KF ADGSL +KHKAHLVAKG+AQQHG
Sbjct: 452 MKEEMAAIEKNGTWKMVDLPEGKNAIGLKWVYKSKFAADGSL-EKHKAHLVAKGHAQQHG 511

Query: 61  IDFEETFSLVARFETVRIVLALVAQQQWLVYQFDVKSAFLNGELQEEVYVEQPEGFVKKD 120
           IDFEETFS+VARFETVRIVLAL AQQQW VYQFDVK AFLNGELQEEVYVEQPEGFVKKD
Sbjct: 512 IDFEETFSIVARFETVRIVLALAAQQQWSVYQFDVKPAFLNGELQEEVYVEQPEGFVKKD 571

Query: 121 SKEKMYKLTKALYGLKQAPRAWYSKID 148
           S+EK+YKLTKALYGLKQAPRAWYSKID
Sbjct: 572 SEEKVYKLTKALYGLKQAPRAWYSKID 597

[Close]

BLAST of Cmc09g0245671 vs. ExPASy TrEMBL
Match: A0A5D3DVG4 (Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold225G00860 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 1.1e-63
Identity = 127/147 (86.39%), Postives = 133/147 (90.48%), Query Frame = 0


Query: 16  MVDLPEGKNVISLKWVYKTKFVADGSLDQKHKAHLVAKGYAQQHGIDFEETFSLVARFET 75
           MVDLPEGKN I LKWVYK+KF ADGSL +KHKA LVAKGYAQQHGIDFEETFS +ARFET
Sbjct: 1   MVDLPEGKNAIGLKWVYKSKFAADGSL-EKHKARLVAKGYAQQHGIDFEETFSPLARFET 60

Query: 76  VRIVLALVAQQQWLVYQFDVKSAFLNGELQEEVYVEQPEGFVKKDSKEKMYKLTKALYGL 135
           +RIVLAL  QQQW VYQFDVKSAFLNGELQEEVYVEQ EGF KKDS+EK+YKLTKALYGL
Sbjct: 61  MRIVLALAVQQQWPVYQFDVKSAFLNGELQEEVYVEQLEGFDKKDSEEKVYKLTKALYGL 120

Query: 136 KQAPRAWYSKIDGYFHQNGFKMSENEP 163
           KQAPRAWYSKIDGYF QNGFK S NEP
Sbjct: 121 KQAPRAWYSKIDGYFQQNGFKRSANEP 146

[Close]

BLAST of Cmc09g0245671 vs. ExPASy TrEMBL
Match: A0A5A7URA0 (Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G002180 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 4.2e-63
Identity = 127/147 (86.39%), Postives = 133/147 (90.48%), Query Frame = 0


Query: 16  MVDLPEGKNVISLKWVYKTKFVADGSLDQKHKAHLVAKGYAQQHGIDFEETFSLVARFET 75
           MVDLPEGK  I LKWVYK+KF ADGSL +KHKA LVAKGYAQQHGIDFEETFS +ARFET
Sbjct: 1   MVDLPEGKKAIGLKWVYKSKFAADGSL-EKHKACLVAKGYAQQHGIDFEETFSPLARFET 60

Query: 76  VRIVLALVAQQQWLVYQFDVKSAFLNGELQEEVYVEQPEGFVKKDSKEKMYKLTKALYGL 135
           +RIVLAL AQQQW VYQFDVKSAFLNGELQEEVYVEQ EGF KKDS+EK+YKLTKALYGL
Sbjct: 61  MRIVLALAAQQQWPVYQFDVKSAFLNGELQEEVYVEQLEGFDKKDSEEKVYKLTKALYGL 120

Query: 136 KQAPRAWYSKIDGYFHQNGFKMSENEP 163
           KQAPRAWYSKIDGYF QNGFK S NEP
Sbjct: 121 KQAPRAWYSKIDGYFQQNGFKRSANEP 146

[Close]

BLAST of Cmc09g0245671 vs. ExPASy TrEMBL
Match: A0A0V0IV83 (Putative ovule protein (Fragment) OS=Solanum chacoense OX=4108 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.6e-62
Identity = 120/160 (75.00%), Postives = 141/160 (88.12%), Query Frame = 0


Query: 3   EEMTAIKKNGTWKMVDLPEGKNVISLKWVYKTKFVADGSLDQKHKAHLVAKGYAQQHGID 62
           EEM + +KNGTW+M++LP+GKN I LKWV+KTKF ADGSL QKHKA LVAKGYAQQ+G+D
Sbjct: 841 EEMKSNEKNGTWEMMELPKGKNAIGLKWVFKTKFAADGSL-QKHKARLVAKGYAQQYGVD 900

Query: 63  FEETFSLVARFETVRIVLALVAQQQWLVYQFDVKSAFLNGELQEEVYVEQPEGFVKKDSK 122
           FEETFS VARFETVR+VLAL AQ +W VYQFDVKSAFLNG+LQEEVYV QP+GF+K+ ++
Sbjct: 901 FEETFSPVARFETVRLVLALAAQLKWPVYQFDVKSAFLNGDLQEEVYVTQPKGFIKEGNE 960

Query: 123 EKMYKLTKALYGLKQAPRAWYSKIDGYFHQNGFKMSENEP 163
            K++KL K LYGLKQAPRAWYSKIDGYF +NG+  SENEP
Sbjct: 961 TKVFKLKKTLYGLKQAPRAWYSKIDGYFQKNGYMRSENEP 999

[Close]

BLAST of Cmc09g0245671 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 129.0 bits (323), Expect = 3.5e-30
Identity = 67/165 (40.61%), Postives = 103/165 (62.42%), Query Frame = 0


Query: 1   MKEEMTAIKKNGTWKMVDLPEGKNVISLKWVYKTKFVADGSLDQKHKAHLVAKGYAQQHG 60
           M +E+ A++   TW++  LP  K  I  KWVYK K+ +DG++ +++KA LVAKGY QQ G
Sbjct: 102 MDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTI-ERYKARLVAKGYTQQEG 161

Query: 61  IDFEETFSLVARFETVRIVLALVAQQQWLVYQFDVKSAFLNGELQEEVYVEQPEGFVKKD 120
           IDF ETFS V +  +V+++LA+ A   + ++Q D+ +AFLNG+L EE+Y++ P G+  + 
Sbjct: 162 IDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQ 221

Query: 121 S----KEKMYKLTKALYGLKQAPRAWYSKIDGYFHQNGFKMSENE 162
                   +  L K++YGLKQA R W+ K        GF  S ++
Sbjct: 222 GDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSD 265

[Close]

BLAST of Cmc09g0245671 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 80.9 bits (198), Expect = 1.1e-15
Identity = 43/86 (50.00%), Postives = 60/86 (69.77%), Query Frame = 0


Query: 1   MKEEMTAIKKNGTWKMVDLPEGKNVISLKWVYKTKFVADGSLDQKHKAHLVAKGYAQQHG 60
           M+EE+ A+ +N TW +V  P  +N++  KWV+KTK  +DG+LD + KA LVAKG+ Q+ G
Sbjct: 44  MQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLD-RLKARLVAKGFHQEEG 103

Query: 61  IDFEETFSLVARFETVRIVLALVAQQ 87
           I F ET+S V R  T+R +L  VAQQ
Sbjct: 104 IYFVETYSPVVRTATIRTILN-VAQQ 127

The following BLAST results are available for this feature:

BLAST of Cmc09g0245671 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033341.1	5.0e-71	85.80	putative gag-pol polyprotein, identical [Cucumis melo var. makuwa]	[more]
KAA0054939.1	2.6e-67	89.80	putative gag-pol polyprotein, identical [Cucumis melo var. makuwa] >TYK22728.1 p...	[more]
TYK27736.1	2.3e-63	86.39	putative gag-pol polyprotein, identical [Cucumis melo var. makuwa]	[more]
KAA0056051.1	8.6e-63	86.39	putative gag-pol polyprotein, identical [Cucumis melo var. makuwa]	[more]
KAA0059765.1	2.3e-60	85.52	integrase [Cucumis melo var. makuwa] >TYJ99778.1 integrase [Cucumis melo var. ma...	[more]

BLAST of Cmc09g0245671 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	6.4e-37	47.53	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q94HW2	3.1e-31	43.83	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	3.1e-31	45.51	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	1.2e-27	45.00	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P92520	1.5e-14	50.00	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc09g0245671 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SV62	2.4e-71	85.80	Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7UN91	1.2e-67	89.80	Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3DVG4	1.1e-63	86.39	Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7URA0	4.2e-63	86.39	Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A0V0IV83	1.6e-62	75.00	Putative ovule protein (Fragment) OS=Solanum chacoense OX=4108 PE=4 SV=1	[more]

BLAST of Cmc09g0245671 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	3.5e-30	40.61	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	1.1e-15	50.00	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 11..160 e-value: 2.3E-51 score: 174.8
None	No IPR available	PANTHER	PTHR11439:SF351	CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8	coord: 1..159
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 1..159
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 10..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc09g0245671.1	Cmc09g0245671.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006013	mannose metabolic process
molecular_function	GO:0004559	alpha-mannosidase activity
molecular_function	GO:0030246	carbohydrate binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding