Cmc08g0236891 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0236891
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag-pol polyprotein, putative
Location	CMiso1.1chr08: 33530575 .. 33531078 (+)
RNA-Seq Expression	Cmc08g0236891
Synteny	Cmc08g0236891

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGGTGAGCTCACATTCTTCCTTGGGTTCAAGATTTGGCAATGTTCCTCTGGCATTTTCTTATCACAAGGTAAGTATGCTCGTAATCTTATAACCAAATTTGGATTGAATAAAGCCAAACCAAAAAGAACACCTGTTGTTCTCCATCTCAAACTTTTGAAGGATGATTCTGGGGAGAGGGTCGATGAAAGTTTATATAGAAGTATCATTGGCAGCCTACTACATCTTACTATTAGTCGACCTGACATAACATTTACAGTGGGAGTATGTGCACGATATCAAGCGTCTCCTCGTATATCTCACCTTCATTTTGACGAAAGGATATTGAAATATGTTCTAGGTACAACAGAATATGGTTTTTCATATACATATGATACATCCTCAGCACTGGTGGGTTTATGTGACACTGATTGGGTAGGCTGTTTAGATGATCGGAAAAGTACCTCAGGGGGTTGTTTTTTCTTGGGCAATAATCTCACAGCATGGTTTAACAAAAAATAA

mRNA sequence

ATGGTGGGTGAGCTCACATTCTTCCTTGGGTTCAAGATTTGGCAATGTTCCTCTGGCATTTTCTTATCACAAGGTAAGTATGCTCGTAATCTTATAACCAAATTTGGATTGAATAAAGCCAAACCAAAAAGAACACCTGTTGTTCTCCATCTCAAACTTTTGAAGGATGATTCTGGGGAGAGGGTCGATGAAAGTTTATATAGAAGTATCATTGGCAGCCTACTACATCTTACTATTAGTCGACCTGACATAACATTTACAGTGGGAGTATGTGCACGATATCAAGCGTCTCCTCGTATATCTCACCTTCATTTTGACGAAAGGATATTGAAATATGTTCTAGGTACAACAGAATATGGTTTTTCATATACATATGATACATCCTCAGCACTGGTGGGTTTATGTGACACTGATTGGGTAGGCTGTTTAGATGATCGGAAAAGTACCTCAGGGGGTTGTTTTTTCTTGGGCAATAATCTCACAGCATGGTTTAACAAAAAATAA

Coding sequence (CDS)

ATGGTGGGTGAGCTCACATTCTTCCTTGGGTTCAAGATTTGGCAATGTTCCTCTGGCATTTTCTTATCACAAGGTAAGTATGCTCGTAATCTTATAACCAAATTTGGATTGAATAAAGCCAAACCAAAAAGAACACCTGTTGTTCTCCATCTCAAACTTTTGAAGGATGATTCTGGGGAGAGGGTCGATGAAAGTTTATATAGAAGTATCATTGGCAGCCTACTACATCTTACTATTAGTCGACCTGACATAACATTTACAGTGGGAGTATGTGCACGATATCAAGCGTCTCCTCGTATATCTCACCTTCATTTTGACGAAAGGATATTGAAATATGTTCTAGGTACAACAGAATATGGTTTTTCATATACATATGATACATCCTCAGCACTGGTGGGTTTATGTGACACTGATTGGGTAGGCTGTTTAGATGATCGGAAAAGTACCTCAGGGGGTTGTTTTTTCTTGGGCAATAATCTCACAGCATGGTTTAACAAAAAATAA

Protein sequence

MVGELTFFLGFKIWQCSSGIFLSQGKYARNLITKFGLNKAKPKRTPVVLHLKLLKDDSGERVDESLYRSIIGSLLHLTISRPDITFTVGVCARYQASPRISHLHFDERILKYVLGTTEYGFSYTYDTSSALVGLCDTDWVGCLDDRKSTSGGCFFLGNNLTAWFNKK

Homology

[Close]

BLAST of Cmc08g0236891 vs. NCBI nr
Match: TYJ96981.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 250.4 bits (638), Expect = 1.1e-62
Identity = 117/167 (70.06%), Postives = 136/167 (81.44%), Query Frame = 0


Query: 1   MVGELTFFLGFKIWQCSSGIFLSQGKYARNLITKFGLNKAKPKRTPVVLHLKLLKDDSGE 60
           MVGELTFFLGF+I Q ++GIF SQ KY +NLI+KFG++KA+PKRTP  +HLK+ KD +GE
Sbjct: 31  MVGELTFFLGFQIKQENTGIFFSQKKYTKNLISKFGMDKARPKRTPAAIHLKMTKDTNGE 90

Query: 61  RVDESLYRSIIGSLLHLTISRPDITFTVGVCARYQASPRISHLHFDERILKYVLGTTEYG 120
           +VD +LYRSIIGSLL+LT SR DI F VGVCARYQA P  SHLH  +RILKY+ GT  YG
Sbjct: 91  KVDTNLYRSIIGSLLYLTASRLDIAFVVGVCARYQADPHTSHLHSAKRILKYISGTFNYG 150

Query: 121 FSYTYDTSSALVGLCDTDWVGCLDDRKSTSGGCFFLGNNLTAWFNKK 168
             YTYDT+  LVG CD DWVG  DDRKSTSGGCFFLGNN+ AWF+KK
Sbjct: 151 IWYTYDTTGTLVGYCDADWVGWTDDRKSTSGGCFFLGNNVAAWFSKK 197

[Close]

BLAST of Cmc08g0236891 vs. NCBI nr
Match: XP_016903185.1 (PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Cucumis melo])

HSP 1 Score: 247.3 bits (630), Expect = 9.4e-62
Identity = 115/167 (68.86%), Postives = 133/167 (79.64%), Query Frame = 0


Query: 1   MVGELTFFLGFKIWQCSSGIFLSQGKYARNLITKFGLNKAKPKRTPVVLHLKLLKDDSGE 60
           MVGEL+FFLGF+I Q   GIF SQ KYA+NLI+KFG++K KPKRTP   HLK+ KD +GE
Sbjct: 3   MVGELSFFLGFQIKQEEIGIFFSQEKYAKNLISKFGMDKTKPKRTPAATHLKMTKDTTGE 62

Query: 61  RVDESLYRSIIGSLLHLTISRPDITFTVGVCARYQASPRISHLHFDERILKYVLGTTEYG 120
           +VD +LYRSIIGS L+LT S+PDITF VGVCARYQA PR SHLH  + ILKY+ GT  YG
Sbjct: 63  KVDTNLYRSIIGSSLYLTASKPDITFVVGVCARYQADPRTSHLHSAKHILKYISGTFNYG 122

Query: 121 FSYTYDTSSALVGLCDTDWVGCLDDRKSTSGGCFFLGNNLTAWFNKK 168
             YT+DT+  LVG CD DW GC DDRKSTS GCFFLGNN+ AWF+KK
Sbjct: 123 LWYTFDTTGVLVGYCDADWAGCSDDRKSTSKGCFFLGNNVAAWFSKK 169

[Close]

BLAST of Cmc08g0236891 vs. NCBI nr
Match: KAA0038409.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 244.6 bits (623), Expect = 6.1e-61
Identity = 115/167 (68.86%), Postives = 134/167 (80.24%), Query Frame = 0


Query: 1   MVGELTFFLGFKIWQCSSGIFLSQGKYARNLITKFGLNKAKPKRTPVVLHLKLLKDDSGE 60
           MVGELTFFLGF+I Q ++GIF SQ KY +NLI+KFG++KA+PKRTP   HLK+ KD +GE
Sbjct: 31  MVGELTFFLGFQIKQENTGIFFSQKKYTKNLISKFGMDKARPKRTPAATHLKMTKDTNGE 90

Query: 61  RVDESLYRSIIGSLLHLTISRPDITFTVGVCARYQASPRISHLHFDERILKYVLGTTEYG 120
           +VD +LYRSIIGSLL+L  SRPDI F VGV ARYQA P +SHLH  +RILKY+  T  YG
Sbjct: 91  KVDTNLYRSIIGSLLYLIASRPDIAFAVGVYARYQADPHMSHLHSAKRILKYISDTFNYG 150

Query: 121 FSYTYDTSSALVGLCDTDWVGCLDDRKSTSGGCFFLGNNLTAWFNKK 168
             YTYDT+  LVG CD DWVG  DDRKSTSGGCFFLGNN+ AWF+KK
Sbjct: 151 IWYTYDTTGTLVGYCDADWVGWTDDRKSTSGGCFFLGNNVAAWFSKK 197

[Close]

BLAST of Cmc08g0236891 vs. NCBI nr
Match: ABN08974.1 (gag-pol polyprotein, putative [Medicago truncatula])

HSP 1 Score: 234.6 bits (597), Expect = 6.3e-58
Identity = 109/167 (65.27%), Postives = 132/167 (79.04%), Query Frame = 0


Query: 1   MVGELTFFLGFKIWQCSSGIFLSQGKYARNLITKFGLNKAKPKRTPVVLHLKLLKDDSGE 60
           +VGELT+FLG +I Q    IF+SQ KYA+N++ KFGL+ A  KRTP   HLKL KD++G 
Sbjct: 207 LVGELTYFLGLQIRQMEDTIFISQSKYAKNIVRKFGLDNASHKRTPTATHLKLSKDENGV 266

Query: 61  RVDESLYRSIIGSLLHLTISRPDITFTVGVCARYQASPRISHLHFDERILKYVLGTTEYG 120
            VD+SLYRS+IGSLL+LT SRPDITF VGVCARYQA P++SHL   +RILKYV GTT+YG
Sbjct: 267 AVDQSLYRSMIGSLLYLTASRPDITFAVGVCARYQAEPKMSHLAQVKRILKYVNGTTDYG 326

Query: 121 FSYTYDTSSALVGLCDTDWVGCLDDRKSTSGGCFFLGNNLTAWFNKK 168
             Y++  +S L+G CD DW G  DDRKSTSGGCFFLGNNL +WF+KK
Sbjct: 327 VLYSHSNNSQLIGYCDADWAGSADDRKSTSGGCFFLGNNLVSWFSKK 373

[Close]

BLAST of Cmc08g0236891 vs. NCBI nr
Match: AAO73529.1 (gag-pol polyprotein [Glycine max])

HSP 1 Score: 231.9 bits (590), Expect = 4.1e-57
Identity = 107/167 (64.07%), Postives = 132/167 (79.04%), Query Frame = 0


Query: 1    MVGELTFFLGFKIWQCSSGIFLSQGKYARNLITKFGLNKAKPKRTPVVLHLKLLKDDSGE 60
            +VGELT+FLG ++ Q    IFLSQ KYA+N++ KFG+  A  KRTP   HLKL KD++G 
Sbjct: 1291 LVGELTYFLGLQVKQMEDSIFLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGT 1350

Query: 61   RVDESLYRSIIGSLLHLTISRPDITFTVGVCARYQASPRISHLHFDERILKYVLGTTEYG 120
             VD+SLYRS+IGSLL+LT SRPDIT+ VGVCARYQA+P+ISHL+  +RILKYV GT++YG
Sbjct: 1351 SVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLNQVKRILKYVNGTSDYG 1410

Query: 121  FSYTYDTSSALVGLCDTDWVGCLDDRKSTSGGCFFLGNNLTAWFNKK 168
              Y + + S LVG CD DW G  DDRKSTSGGCF+LGNNL +WF+KK
Sbjct: 1411 IMYCHCSGSMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKK 1457

[Close]

BLAST of Cmc08g0236891 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.0e-26
Identity = 60/166 (36.14%), Postives = 96/166 (57.83%), Query Frame = 0


Query: 2   VGELTFFLGFKIWQCSSGIFLSQGKYARNLITKFGLNKAKPKRTPVVLHLKLLKDDSGER 61
           +G + +FLG +I    SG+FLSQ KYA  ++   G+   KP  TP+ L L      + + 
Sbjct: 36  LGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLPLKLN-SSVSTAKY 95

Query: 62  VDESLYRSIIGSLLHLTISRPDITFTVGVCARYQASPRISHLHFDERILKYVLGTTEYGF 121
            D S +RSI+G+L +LT++RPDI++ V +  +    P ++     +R+L+YV GT  +G 
Sbjct: 96  PDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGL 155

Query: 122 SYTYDTSSALVGLCDTDWVGCLDDRKSTSGGCFFLGNNLTAWFNKK 168
               ++   +   CD+DW GC   R+ST+G C FLG N+ +W  K+
Sbjct: 156 YIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKR 200

[Close]

BLAST of Cmc08g0236891 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 5.8e-22
Identity = 56/164 (34.15%), Postives = 89/164 (54.27%), Query Frame = 0


Query: 4    ELTFFLGFKIWQCSSGIFLSQGKYARNLITKFGLNKAKPKRTPVVLHLKLLKDDSGERVD 63
            EL +FLG +  +  +G+ LSQ +Y  +L+ +  +  AKP  TP+    KL      +  D
Sbjct: 1182 ELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTD 1241

Query: 64   ESLYRSIIGSLLHLTISRPDITFTVGVCARYQASPRISHLHFDERILKYVLGTTEYGFSY 123
             + YR I+GSL +L  +RPDI++ V   +++   P   HL   +RIL+Y+ GT  +G   
Sbjct: 1242 PTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFL 1301

Query: 124  TYDTSSALVGLCDTDWVGCLDDRKSTSGGCFFLGNNLTAWFNKK 168
                + +L    D DW G  DD  ST+G   +LG++  +W +KK
Sbjct: 1302 KKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKK 1345

[Close]

BLAST of Cmc08g0236891 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 7.6e-22
Identity = 53/164 (32.32%), Postives = 89/164 (54.27%), Query Frame = 0


Query: 4    ELTFFLGFKIWQCSSGIFLSQGKYARNLITKFGLNKAKPKRTPVVLHLKLLKDDSGERVD 63
            +L +FLG +  +   G+ LSQ +Y  +L+ +  +  AKP  TP+    KL      +  D
Sbjct: 1165 DLHYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPD 1224

Query: 64   ESLYRSIIGSLLHLTISRPDITFTVGVCARYQASPRISHLHFDERILKYVLGTTEYGFSY 123
             + YR I+GSL +L  +RPD+++ V   ++Y   P   H +  +R+L+Y+ GT ++G   
Sbjct: 1225 PTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFL 1284

Query: 124  TYDTSSALVGLCDTDWVGCLDDRKSTSGGCFFLGNNLTAWFNKK 168
                + +L    D DW G  DD  ST+G   +LG++  +W +KK
Sbjct: 1285 KKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKK 1328

[Close]

BLAST of Cmc08g0236891 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.8e-16
Identity = 59/175 (33.71%), Postives = 89/175 (50.86%), Query Frame = 0


Query: 2    VGELTFFLGFKI--WQCSSGIFLSQGKYARNLITKFGLNKAKPKRTPVVLHLKLLKDDSG 61
            +G     LG KI   + S  ++LSQ KY   ++ +F +  AKP  TP+  HLKL K    
Sbjct: 1038 LGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCP 1097

Query: 62   ERVDES------LYRSIIGSLLH-LTISRPDITFTVGVCARYQASPRISHLHFDERILKY 121
              V+E        Y S +GSL++ +  +RPDI   VGV +R+  +P   H    + IL+Y
Sbjct: 1098 TTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRY 1157

Query: 122  VLGTTEYGFSYTYDTSSALV-GLCDTDWVGCLDDRKSTSGGCFFLGNNLTAWFNK 167
            + GTT  G    +  S  ++ G  D D  G +D+RKS++G  F       +W +K
Sbjct: 1158 LRGTT--GDCLCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSK 1210

[Close]

BLAST of Cmc08g0236891 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 80.5 bits (197), Expect = 2.0e-14
Identity = 50/172 (29.07%), Postives = 88/172 (51.16%), Query Frame = 0


Query: 2    VGELTFFLGFKIWQCSSGIFLSQGKYARNLITKFGLNKAKPKRTPV--VLHLKLLKDDSG 61
            + E+  F+G +I      I+LSQ  Y + +++KF +       TP+   ++ +LL  D  
Sbjct: 1117 LNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELLNSDED 1176

Query: 62   ERVDESLYRSIIGSLLHLTI-SRPDITFTVGVCARYQASPRISHLHFDERILKYVLGTTE 121
                 +  RS+IG L+++ + +RPD+T  V + +RY +          +R+L+Y+ GT +
Sbjct: 1177 ---CNTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTID 1236

Query: 122  YG--FSYTYDTSSALVGLCDTDWVGCLDDRKSTSGGCFFLGN-NLTAWFNKK 168
                F       + ++G  D+DW G   DRKST+G  F + + NL  W  K+
Sbjct: 1237 MKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKR 1285

[Close]

BLAST of Cmc08g0236891 vs. ExPASy TrEMBL
Match: A0A5D3BEA0 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00260 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 5.4e-63
Identity = 117/167 (70.06%), Postives = 136/167 (81.44%), Query Frame = 0


Query: 1   MVGELTFFLGFKIWQCSSGIFLSQGKYARNLITKFGLNKAKPKRTPVVLHLKLLKDDSGE 60
           MVGELTFFLGF+I Q ++GIF SQ KY +NLI+KFG++KA+PKRTP  +HLK+ KD +GE
Sbjct: 31  MVGELTFFLGFQIKQENTGIFFSQKKYTKNLISKFGMDKARPKRTPAAIHLKMTKDTNGE 90

Query: 61  RVDESLYRSIIGSLLHLTISRPDITFTVGVCARYQASPRISHLHFDERILKYVLGTTEYG 120
           +VD +LYRSIIGSLL+LT SR DI F VGVCARYQA P  SHLH  +RILKY+ GT  YG
Sbjct: 91  KVDTNLYRSIIGSLLYLTASRLDIAFVVGVCARYQADPHTSHLHSAKRILKYISGTFNYG 150

Query: 121 FSYTYDTSSALVGLCDTDWVGCLDDRKSTSGGCFFLGNNLTAWFNKK 168
             YTYDT+  LVG CD DWVG  DDRKSTSGGCFFLGNN+ AWF+KK
Sbjct: 151 IWYTYDTTGTLVGYCDADWVGWTDDRKSTSGGCFFLGNNVAAWFSKK 197

[Close]

BLAST of Cmc08g0236891 vs. ExPASy TrEMBL
Match: A0A1S4E5D6 (uncharacterized mitochondrial protein AtMg00810-like OS=Cucumis melo OX=3656 GN=LOC107992065 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 4.6e-62
Identity = 115/167 (68.86%), Postives = 133/167 (79.64%), Query Frame = 0


Query: 1   MVGELTFFLGFKIWQCSSGIFLSQGKYARNLITKFGLNKAKPKRTPVVLHLKLLKDDSGE 60
           MVGEL+FFLGF+I Q   GIF SQ KYA+NLI+KFG++K KPKRTP   HLK+ KD +GE
Sbjct: 3   MVGELSFFLGFQIKQEEIGIFFSQEKYAKNLISKFGMDKTKPKRTPAATHLKMTKDTTGE 62

Query: 61  RVDESLYRSIIGSLLHLTISRPDITFTVGVCARYQASPRISHLHFDERILKYVLGTTEYG 120
           +VD +LYRSIIGS L+LT S+PDITF VGVCARYQA PR SHLH  + ILKY+ GT  YG
Sbjct: 63  KVDTNLYRSIIGSSLYLTASKPDITFVVGVCARYQADPRTSHLHSAKHILKYISGTFNYG 122

Query: 121 FSYTYDTSSALVGLCDTDWVGCLDDRKSTSGGCFFLGNNLTAWFNKK 168
             YT+DT+  LVG CD DW GC DDRKSTS GCFFLGNN+ AWF+KK
Sbjct: 123 LWYTFDTTGVLVGYCDADWAGCSDDRKSTSKGCFFLGNNVAAWFSKK 169

[Close]

BLAST of Cmc08g0236891 vs. ExPASy TrEMBL
Match: A0A5A7TAN0 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G003070 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 3.0e-61
Identity = 115/167 (68.86%), Postives = 134/167 (80.24%), Query Frame = 0


Query: 1   MVGELTFFLGFKIWQCSSGIFLSQGKYARNLITKFGLNKAKPKRTPVVLHLKLLKDDSGE 60
           MVGELTFFLGF+I Q ++GIF SQ KY +NLI+KFG++KA+PKRTP   HLK+ KD +GE
Sbjct: 31  MVGELTFFLGFQIKQENTGIFFSQKKYTKNLISKFGMDKARPKRTPAATHLKMTKDTNGE 90

Query: 61  RVDESLYRSIIGSLLHLTISRPDITFTVGVCARYQASPRISHLHFDERILKYVLGTTEYG 120
           +VD +LYRSIIGSLL+L  SRPDI F VGV ARYQA P +SHLH  +RILKY+  T  YG
Sbjct: 91  KVDTNLYRSIIGSLLYLIASRPDIAFAVGVYARYQADPHMSHLHSAKRILKYISDTFNYG 150

Query: 121 FSYTYDTSSALVGLCDTDWVGCLDDRKSTSGGCFFLGNNLTAWFNKK 168
             YTYDT+  LVG CD DWVG  DDRKSTSGGCFFLGNN+ AWF+KK
Sbjct: 151 IWYTYDTTGTLVGYCDADWVGWTDDRKSTSGGCFFLGNNVAAWFSKK 197

[Close]

BLAST of Cmc08g0236891 vs. ExPASy TrEMBL
Match: A2Q5V4 (Gag-pol polyprotein, putative OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC169177g29v1 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 3.1e-58
Identity = 109/167 (65.27%), Postives = 132/167 (79.04%), Query Frame = 0


Query: 1   MVGELTFFLGFKIWQCSSGIFLSQGKYARNLITKFGLNKAKPKRTPVVLHLKLLKDDSGE 60
           +VGELT+FLG +I Q    IF+SQ KYA+N++ KFGL+ A  KRTP   HLKL KD++G 
Sbjct: 207 LVGELTYFLGLQIRQMEDTIFISQSKYAKNIVRKFGLDNASHKRTPTATHLKLSKDENGV 266

Query: 61  RVDESLYRSIIGSLLHLTISRPDITFTVGVCARYQASPRISHLHFDERILKYVLGTTEYG 120
            VD+SLYRS+IGSLL+LT SRPDITF VGVCARYQA P++SHL   +RILKYV GTT+YG
Sbjct: 267 AVDQSLYRSMIGSLLYLTASRPDITFAVGVCARYQAEPKMSHLAQVKRILKYVNGTTDYG 326

Query: 121 FSYTYDTSSALVGLCDTDWVGCLDDRKSTSGGCFFLGNNLTAWFNKK 168
             Y++  +S L+G CD DW G  DDRKSTSGGCFFLGNNL +WF+KK
Sbjct: 327 VLYSHSNNSQLIGYCDADWAGSADDRKSTSGGCFFLGNNLVSWFSKK 373

[Close]

BLAST of Cmc08g0236891 vs. ExPASy TrEMBL
Match: Q84VH6 (Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 2.0e-57
Identity = 107/167 (64.07%), Postives = 132/167 (79.04%), Query Frame = 0


Query: 1    MVGELTFFLGFKIWQCSSGIFLSQGKYARNLITKFGLNKAKPKRTPVVLHLKLLKDDSGE 60
            +VGELT+FLG ++ Q    IFLSQ KYA+N++ KFG+  A  KRTP   HLKL KD++G 
Sbjct: 1291 LVGELTYFLGLQVKQMEDSIFLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGT 1350

Query: 61   RVDESLYRSIIGSLLHLTISRPDITFTVGVCARYQASPRISHLHFDERILKYVLGTTEYG 120
             VD+SLYRS+IGSLL+LT SRPDIT+ VGVCARYQA+P+ISHL+  +RILKYV GT++YG
Sbjct: 1351 SVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLNQVKRILKYVNGTSDYG 1410

Query: 121  FSYTYDTSSALVGLCDTDWVGCLDDRKSTSGGCFFLGNNLTAWFNKK 168
              Y + + S LVG CD DW G  DDRKSTSGGCF+LGNNL +WF+KK
Sbjct: 1411 IMYCHCSGSMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKK 1457

[Close]

BLAST of Cmc08g0236891 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 121.3 bits (303), Expect = 7.3e-28
Identity = 60/166 (36.14%), Postives = 96/166 (57.83%), Query Frame = 0


Query: 2   VGELTFFLGFKIWQCSSGIFLSQGKYARNLITKFGLNKAKPKRTPVVLHLKLLKDDSGER 61
           +G + +FLG +I    SG+FLSQ KYA  ++   G+   KP  TP+ L L      + + 
Sbjct: 36  LGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLPLKLN-SSVSTAKY 95

Query: 62  VDESLYRSIIGSLLHLTISRPDITFTVGVCARYQASPRISHLHFDERILKYVLGTTEYGF 121
            D S +RSI+G+L +LT++RPDI++ V +  +    P ++     +R+L+YV GT  +G 
Sbjct: 96  PDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGL 155

Query: 122 SYTYDTSSALVGLCDTDWVGCLDDRKSTSGGCFFLGNNLTAWFNKK 168
               ++   +   CD+DW GC   R+ST+G C FLG N+ +W  K+
Sbjct: 156 YIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKR 200

[Close]

BLAST of Cmc08g0236891 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 115.5 bits (288), Expect = 4.0e-26
Identity = 59/166 (35.54%), Postives = 92/166 (55.42%), Query Frame = 0


Query: 2   VGELTFFLGFKIWQCSSGIFLSQGKYARNLITKFGLNKAKPKRTPVVLHLKLLKDDSGER 61
           +G L +FLG +I + ++GI + Q KYA +L+ + GL   KP   P+   +       G+ 
Sbjct: 313 LGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDF 372

Query: 62  VDESLYRSIIGSLLHLTISRPDITFTVGVCARYQASPRISHLHFDERILKYVLGTTEYGF 121
           VD   YR +IG L++L I+R DI+F V   +++  +PR++H     +IL Y+ GT   G 
Sbjct: 373 VDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGL 432

Query: 122 SYTYDTSSALVGLCDTDWVGCLDDRKSTSGGCFFLGNNLTAWFNKK 168
            Y+      L    D  +  C D R+ST+G C FLG +L +W +KK
Sbjct: 433 FYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKK 478

[Close]

BLAST of Cmc08g0236891 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 63.2 bits (152), Expect = 2.3e-10
Identity = 30/88 (34.09%), Postives = 49/88 (55.68%), Query Frame = 0


Query: 75  LHLTISRPDITFTVGVCARYQASPRISHLHFDERILKYVLGTTEYGFSYTYDTSSALVGL 134
           ++LTI+RPD+TF V   +++ ++ R + +    ++L YV GT   G  Y+  +   L   
Sbjct: 1   MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60

Query: 135 CDTDWVGCLDDRKSTSGGC-----FFLG 158
            D+DW  C D R+S +G C     +FLG
Sbjct: 61  ADSDWASCPDTRRSVTGFCSLVPLWFLG 88

The following BLAST results are available for this feature:

BLAST of Cmc08g0236891 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ96981.1	1.1e-62	70.06	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
XP_016903185.1	9.4e-62	68.86	PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Cucumis melo]	[more]
KAA0038409.1	6.1e-61	68.86	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
ABN08974.1	6.3e-58	65.27	gag-pol polyprotein, putative [Medicago truncatula]	[more]
AAO73529.1	4.1e-57	64.07	gag-pol polyprotein [Glycine max]	[more]

BLAST of Cmc08g0236891 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P92519	1.0e-26	36.14	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q94HW2	5.8e-22	34.15	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	7.6e-22	32.32	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P10978	2.8e-16	33.71	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	2.0e-14	29.07	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of Cmc08g0236891 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BEA0	5.4e-63	70.06	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S4E5D6	4.6e-62	68.86	uncharacterized mitochondrial protein AtMg00810-like OS=Cucumis melo OX=3656 GN=...	[more]
A0A5A7TAN0	3.0e-61	68.86	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A2Q5V4	3.1e-58	65.27	Gag-pol polyprotein, putative OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC16917...	[more]
Q84VH6	2.0e-57	64.07	Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1	[more]

BLAST of Cmc08g0236891 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00810.1	7.3e-28	36.14	DNA/RNA polymerases superfamily protein	[more]
AT4G23160.1	4.0e-26	35.54	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00240.1	2.3e-10	34.09	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 46..154
None	No IPR available	PANTHER	PTHR11439:SF308	SUBFAMILY NOT NAMED	coord: 46..154

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0236891.1	Cmc08g0236891.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding