Cmc08g0236621 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0236621
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr08: 33131292 .. 33131783 (+)
RNA-Seq Expression	Cmc08g0236621
Synteny	Cmc08g0236621

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGAAGGAAAGATTGCTGCGATACGTGACTGGGTAATACCAAAATCAGTTTTGGAATTACGCTCCTTCCTCGGGTTAGCAAATTATTACCAACGATTTGTGGAGGGATTCTCCAAACGAGCAAGTTCGCTGACTGAGTTACCGAAAAAAGACGTTCAATGGAGTTGGACCCTCGAGTGTCAAGCCACCTTTGATGGCCTGAAGAAAGTCATGATGGAGGGGCCAGTTCTGGGAATTGTTGATGTGACCAAACCTTTCAAGGTTGAGATGGATACGTTCAATTATGCGTTGGGCGGTGTTCTCCTACAGAATGGACACTCGATCGCATACAAAAGTCGAAAGCTAAATGCAGCTGAAAAGTGGTATACAGTATCTGAAAAAAGAGATGCTTGCAGTAGTACATTGCTTGAGGGCCTGAAGAAATACCTACTAGGTTTTTCATTTATGGTGAAGGCGGACAATAATGCAACCTGCCATTTCTTTAACTAG

mRNA sequence

ATGAAAGAAGGAAAGATTGCTGCGATACGTGACTGGGTAATACCAAAATCAGTTTTGGAATTACGCTCCTTCCTCGGGTTAGCAAATTATTACCAACGATTTGTGGAGGGATTCTCCAAACGAGCAAGTTCGCTGACTGAGTTACCGAAAAAAGACGTTCAATGGAGTTGGACCCTCGAGTGTCAAGCCACCTTTGATGGCCTGAAGAAAGTCATGATGGAGGGGCCAGTTCTGGGAATTGTTGATGTGACCAAACCTTTCAAGGTTGAGATGGATACGTTCAATTATGCGTTGGGCGGTGTTCTCCTACAGAATGGACACTCGATCGCATACAAAAGTCGAAAGCTAAATGCAGCTGAAAAGTGGTATACAGTATCTGAAAAAAGAGATGCTTGCAGTAGTACATTGCTTGAGGGCCTGAAGAAATACCTACTAGGTTTTTCATTTATGGTGAAGGCGGACAATAATGCAACCTGCCATTTCTTTAACTAG

Coding sequence (CDS)

ATGAAAGAAGGAAAGATTGCTGCGATACGTGACTGGGTAATACCAAAATCAGTTTTGGAATTACGCTCCTTCCTCGGGTTAGCAAATTATTACCAACGATTTGTGGAGGGATTCTCCAAACGAGCAAGTTCGCTGACTGAGTTACCGAAAAAAGACGTTCAATGGAGTTGGACCCTCGAGTGTCAAGCCACCTTTGATGGCCTGAAGAAAGTCATGATGGAGGGGCCAGTTCTGGGAATTGTTGATGTGACCAAACCTTTCAAGGTTGAGATGGATACGTTCAATTATGCGTTGGGCGGTGTTCTCCTACAGAATGGACACTCGATCGCATACAAAAGTCGAAAGCTAAATGCAGCTGAAAAGTGGTATACAGTATCTGAAAAAAGAGATGCTTGCAGTAGTACATTGCTTGAGGGCCTGAAGAAATACCTACTAGGTTTTTCATTTATGGTGAAGGCGGACAATAATGCAACCTGCCATTTCTTTAACTAG

Protein sequence

MKEGKIAAIRDWVIPKSVLELRSFLGLANYYQRFVEGFSKRASSLTELPKKDVQWSWTLECQATFDGLKKVMMEGPVLGIVDVTKPFKVEMDTFNYALGGVLLQNGHSIAYKSRKLNAAEKWYTVSEKRDACSSTLLEGLKKYLLGFSFMVKADNNATCHFFN

Homology

[Close]

BLAST of Cmc08g0236621 vs. NCBI nr
Match: KAA0062487.1 (polyprotein [Cucumis melo var. makuwa] >TYK27397.1 polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 297.0 bits (759), Expect = 1.0e-76
Identity = 145/150 (96.67%), Postives = 146/150 (97.33%), Query Frame = 0


Query: 1   MKEGKIAAIRDWVIPKSVLELRSFLGLANYYQRFVEGFSKRASSLTELPKKDVQWSWTLE 60
           MKEGKIAAIRDWVIPKSVLELRSFLGLANYYQRFVEGFSKRASSLTELPKKDVQWSWTLE
Sbjct: 1   MKEGKIAAIRDWVIPKSVLELRSFLGLANYYQRFVEGFSKRASSLTELPKKDVQWSWTLE 60

Query: 61  CQATFDGLKKVMMEGPVLGIVDVTKPFKVEMDTFNYALGGVLLQNGHSIAYKSRKLNAAE 120
           CQATFDGLKKVMMEGPVLGIVDVTKPFKVEMDTFNYALGGVLLQNGHSIAYKSRKLNAAE
Sbjct: 61  CQATFDGLKKVMMEGPVLGIVDVTKPFKVEMDTFNYALGGVLLQNGHSIAYKSRKLNAAE 120

Query: 121 KWYTVSEKRDACSSTLLEGLKKYLLGFSFM 151
           KWYTVSEKRDACSSTLLEGLKKYLL    +
Sbjct: 121 KWYTVSEKRDACSSTLLEGLKKYLLAMCML 150

[Close]

BLAST of Cmc08g0236621 vs. NCBI nr
Match: KAA0032952.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK22015.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 251.9 bits (642), Expect = 3.7e-63
Identity = 123/162 (75.93%), Postives = 134/162 (82.72%), Query Frame = 0


Query: 1   MKEGKIAAIRDWVIPKSVLELRSFLGLANYYQRFVEGFSKRASSLTELPKKDVQWSWTLE 60
           M+EGKIAAIRDW +PKSVLELRSFLGLANYY +FVEGFSKRAS LTEL KKDV WSW  E
Sbjct: 1   MEEGKIAAIRDWAVPKSVLELRSFLGLANYYSQFVEGFSKRASPLTELLKKDVHWSWDPE 60

Query: 61  CQATFDGLKKVMMEGPVLGIVDVTKPFKVEMDTFNYALGGVLLQNGHSIAYKSRKLNAAE 120
           CQA FDGLK+ MMEGP+LGI DVTKPF+VE D  +YALGGVLLQNGH IAYKSRKLNAAE
Sbjct: 61  CQAAFDGLKQAMMEGPLLGIADVTKPFEVETDVSDYALGGVLLQNGHPIAYKSRKLNAAE 120

Query: 121 KWYTVSEKRDACSSTLLEGLKKYLLGFSFMVKADNNATCHFF 163
           + YTVSEK        L   ++YLLG SF+VK DNNATCHFF
Sbjct: 121 RRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNNATCHFF 162

[Close]

BLAST of Cmc08g0236621 vs. NCBI nr
Match: KAA0039608.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 248.8 bits (634), Expect = 3.2e-62
Identity = 120/162 (74.07%), Postives = 135/162 (83.33%), Query Frame = 0


Query: 1   MKEGKIAAIRDWVIPKSVLELRSFLGLANYYQRFVEGFSKRASSLTELPKKDVQWSWTLE 60
           M+EGKIAAI DW +PKSVLELRSFLGLANYY+RFVEGFSKRASSLTEL KKDV W+W  E
Sbjct: 806 MEEGKIAAIHDWAMPKSVLELRSFLGLANYYRRFVEGFSKRASSLTELLKKDVNWNWDPE 865

Query: 61  CQATFDGLKKVMMEGPVLGIVDVTKPFKVEMDTFNYALGGVLLQNGHSIAYKSRKLNAAE 120
           CQA FDGLK+ +MEGP+LGI DVTKPF+VE D F+YALGGVLLQNGH I Y+SRKLNAAE
Sbjct: 866 CQAAFDGLKQALMEGPLLGIADVTKPFEVETDAFDYALGGVLLQNGHPITYESRKLNAAE 925

Query: 121 KWYTVSEKRDACSSTLLEGLKKYLLGFSFMVKADNNATCHFF 163
           + YTVSEK        L   ++YLLG SF+VK DN+ATCHFF
Sbjct: 926 RRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFF 967

[Close]

BLAST of Cmc08g0236621 vs. NCBI nr
Match: TYK07954.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 245.0 bits (624), Expect = 4.6e-61
Identity = 119/162 (73.46%), Postives = 134/162 (82.72%), Query Frame = 0


Query: 1    MKEGKIAAIRDWVIPKSVLELRSFLGLANYYQRFVEGFSKRASSLTELPKKDVQWSWTLE 60
            M+EGKIAAIRDW +PKSV ELRSFLGLANYY+RFVEGFSKRAS LTEL KKDV W+W  E
Sbjct: 846  MEEGKIAAIRDWAMPKSVSELRSFLGLANYYRRFVEGFSKRASPLTELLKKDVHWNWDPE 905

Query: 61   CQATFDGLKKVMMEGPVLGIVDVTKPFKVEMDTFNYALGGVLLQNGHSIAYKSRKLNAAE 120
            CQA FDGLK+ +MEGP+LGI DVTKPF+VE D  +YALGGVLLQNGH IAY+SRKLNAAE
Sbjct: 906  CQAAFDGLKQALMEGPLLGIADVTKPFEVETDASDYALGGVLLQNGHPIAYESRKLNAAE 965

Query: 121  KWYTVSEKRDACSSTLLEGLKKYLLGFSFMVKADNNATCHFF 163
            + YTVSEK        L   ++YLLG SF+VK DN+ATCHFF
Sbjct: 966  RRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFF 1007

[Close]

BLAST of Cmc08g0236621 vs. NCBI nr
Match: TYK01597.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 245.0 bits (624), Expect = 4.6e-61
Identity = 119/162 (73.46%), Postives = 132/162 (81.48%), Query Frame = 0


Query: 1    MKEGKIAAIRDWVIPKSVLELRSFLGLANYYQRFVEGFSKRASSLTELPKKDVQWSWTLE 60
            M+EGKIAAIRDW +PKSV ELRSFLGLANYY+RFVEGFSKRAS LTEL KKDV W+W  E
Sbjct: 855  MEEGKIAAIRDWAMPKSVSELRSFLGLANYYRRFVEGFSKRASPLTELLKKDVHWNWDPE 914

Query: 61   CQATFDGLKKVMMEGPVLGIVDVTKPFKVEMDTFNYALGGVLLQNGHSIAYKSRKLNAAE 120
            CQA FDGLK+ MMEGP+LGI DVTKPF+VE D  NYALGGVLLQNGH I Y+SRKLN AE
Sbjct: 915  CQAAFDGLKQAMMEGPLLGIADVTKPFEVETDASNYALGGVLLQNGHPITYESRKLNVAE 974

Query: 121  KWYTVSEKRDACSSTLLEGLKKYLLGFSFMVKADNNATCHFF 163
            + YTVSEK        L   ++YLLG SF+VK DN+ATCHFF
Sbjct: 975  RRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFF 1016

[Close]

BLAST of Cmc08g0236621 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.5e-19
Identity = 55/152 (36.18%), Postives = 85/152 (55.92%), Query Frame = 0


Query: 5   KIAAIRDWVIPKSVLELRSFLGLANYYQRFVEGFSKRASSLTELPKKDVQWSWT-LECQA 64
           KI AI+ + IP    E+++FLGL  YY++F+  F+  A  +T+  KK+++   T  E  +
Sbjct: 426 KIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDS 485

Query: 65  TFDGLKKVMMEGPVLGIVDVTKPFKVEMDTFNYALGGVLLQNGHSIAYKSRKLNAAEKWY 124
            F  LK ++ E P+L + D TK F +  D  + ALG VL Q+GH ++Y SR LN  E  Y
Sbjct: 486 AFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGAVLSQDGHPLSYISRTLNEHEINY 545

Query: 125 TVSEKRDACSSTLLEGLKKYLLGFSFMVKADN 156
           +  EK         +  + YLLG  F + +D+
Sbjct: 546 STIEKELLAIVWATKTFRHYLLGRHFEISSDH 577

[Close]

BLAST of Cmc08g0236621 vs. ExPASy Swiss-Prot
Match: P10394 (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.5e-17
Identity = 51/163 (31.29%), Postives = 79/163 (48.47%), Query Frame = 0


Query: 5   KIAAIRDWVIPKSVLELRSFLGLANYYQRFVEGFSKRASSLTELPKKDVQWSWTLECQAT 64
           K   I+++ +P      R F+   NYY+RF++ F+  +  +T L KK+V + WT ECQ  
Sbjct: 534 KYDVIQNYPVPHDADSARRFVAFCNYYRRFIKNFADYSRHITRLCKKNVPFEWTDECQKA 593

Query: 65  FDGLKKVMMEGPVLGIVDVTKPFKVEMDTFNYALGGVLLQ--NGHS--IAYKSRKLNAAE 124
           F  LK  ++   +L   D +K F +  D    A G VL Q  NGH   +AY SR     E
Sbjct: 594 FIHLKSQLINPTLLQYPDFSKEFCITTDASKQACGAVLTQNHNGHQLPVAYASRAFTKGE 653

Query: 125 KWYTVSEKRDACSSTLLEGLKKYLLGFSFMVKADNNATCHFFN 164
              + +E+  A     +   + Y+ G  F VK D+    + F+
Sbjct: 654 SNKSTTEQELAAIHWAIIHFRPYIYGKHFTVKTDHRPLTYLFS 696

[Close]

BLAST of Cmc08g0236621 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.9e-15
Identity = 56/157 (35.67%), Postives = 81/157 (51.59%), Query Frame = 0


Query: 5   KIAAIRDWVIPKSVLELRSFLGLANYYQRFVEGFSKRASSLTELPK------KDVQWS-- 64
           K+ AI +   P SV EL+ FLG+ +YY++F++ ++K A  LT L +      K  Q S  
Sbjct: 342 KVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAKVAKPLTNLTRGLYANIKSSQSSKV 401

Query: 65  -WTLECQA--TFDGLKKVMMEGPVLGIVDVTKPFKVEMDTFNYALGGVLLQNGHS----I 124
             TL+  A  +F+ LK ++    +L     TKPF +  D  N+A+G VL Q+       I
Sbjct: 402 PITLDETALQSFNDLKSILCSSEILAFPCFTKPFHLTTDASNWAIGAVLSQDDQGRDRPI 461

Query: 125 AYKSRKLNAAEKWYTVSEKRDACSSTLLEGLKKYLLG 147
           AY SR LN  E+ Y   EK        L+ L+ YL G
Sbjct: 462 AYISRSLNKTEENYATIEKEMLAIIWSLDNLRAYLYG 498

[Close]

BLAST of Cmc08g0236621 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-14
Identity = 47/144 (32.64%), Postives = 72/144 (50.00%), Query Frame = 0


Query: 6   IAAIRDWVIPKSVLELRSFLGLANYYQRFVEGFSKRASSLTELPKKDVQWSWTLECQATF 65
           I  +  W  PK+  ELR FLG  NY ++F+   S+    L  L KKDV+W WT       
Sbjct: 627 IDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAI 686

Query: 66  DGLKKVMMEGPVLGIVDVTKPFKVEMDTFNYALGGVLLQNG-----HSIAYKSRKLNAAE 125
           + +K+ ++  PVL   D +K   +E D  + A+G VL Q       + + Y S K++ A+
Sbjct: 687 ENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQ 746

Query: 126 KWYTVSEKRDACSSTLLEGLKKYL 145
             Y+VS+K        L+  + YL
Sbjct: 747 LNYSVSDKEMLAIIKSLKHWRHYL 770

[Close]

BLAST of Cmc08g0236621 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-14
Identity = 47/144 (32.64%), Postives = 72/144 (50.00%), Query Frame = 0


Query: 6   IAAIRDWVIPKSVLELRSFLGLANYYQRFVEGFSKRASSLTELPKKDVQWSWTLECQATF 65
           I  +  W  PK+  ELR FLG  NY ++F+   S+    L  L KKDV+W WT       
Sbjct: 627 IDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAI 686

Query: 66  DGLKKVMMEGPVLGIVDVTKPFKVEMDTFNYALGGVLLQNG-----HSIAYKSRKLNAAE 125
           + +K+ ++  PVL   D +K   +E D  + A+G VL Q       + + Y S K++ A+
Sbjct: 687 ENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQ 746

Query: 126 KWYTVSEKRDACSSTLLEGLKKYL 145
             Y+VS+K        L+  + YL
Sbjct: 747 LNYSVSDKEMLAIIKSLKHWRHYL 770

[Close]

BLAST of Cmc08g0236621 vs. ExPASy TrEMBL
Match: A0A5D3DUE5 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G00810 PE=4 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 4.9e-77
Identity = 145/150 (96.67%), Postives = 146/150 (97.33%), Query Frame = 0


Query: 1   MKEGKIAAIRDWVIPKSVLELRSFLGLANYYQRFVEGFSKRASSLTELPKKDVQWSWTLE 60
           MKEGKIAAIRDWVIPKSVLELRSFLGLANYYQRFVEGFSKRASSLTELPKKDVQWSWTLE
Sbjct: 1   MKEGKIAAIRDWVIPKSVLELRSFLGLANYYQRFVEGFSKRASSLTELPKKDVQWSWTLE 60

Query: 61  CQATFDGLKKVMMEGPVLGIVDVTKPFKVEMDTFNYALGGVLLQNGHSIAYKSRKLNAAE 120
           CQATFDGLKKVMMEGPVLGIVDVTKPFKVEMDTFNYALGGVLLQNGHSIAYKSRKLNAAE
Sbjct: 61  CQATFDGLKKVMMEGPVLGIVDVTKPFKVEMDTFNYALGGVLLQNGHSIAYKSRKLNAAE 120

Query: 121 KWYTVSEKRDACSSTLLEGLKKYLLGFSFM 151
           KWYTVSEKRDACSSTLLEGLKKYLL    +
Sbjct: 121 KWYTVSEKRDACSSTLLEGLKKYLLAMCML 150

[Close]

BLAST of Cmc08g0236621 vs. ExPASy TrEMBL
Match: A0A5A7SP58 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold482G00550 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 1.8e-63
Identity = 123/162 (75.93%), Postives = 134/162 (82.72%), Query Frame = 0


Query: 1   MKEGKIAAIRDWVIPKSVLELRSFLGLANYYQRFVEGFSKRASSLTELPKKDVQWSWTLE 60
           M+EGKIAAIRDW +PKSVLELRSFLGLANYY +FVEGFSKRAS LTEL KKDV WSW  E
Sbjct: 1   MEEGKIAAIRDWAVPKSVLELRSFLGLANYYSQFVEGFSKRASPLTELLKKDVHWSWDPE 60

Query: 61  CQATFDGLKKVMMEGPVLGIVDVTKPFKVEMDTFNYALGGVLLQNGHSIAYKSRKLNAAE 120
           CQA FDGLK+ MMEGP+LGI DVTKPF+VE D  +YALGGVLLQNGH IAYKSRKLNAAE
Sbjct: 61  CQAAFDGLKQAMMEGPLLGIADVTKPFEVETDVSDYALGGVLLQNGHPIAYKSRKLNAAE 120

Query: 121 KWYTVSEKRDACSSTLLEGLKKYLLGFSFMVKADNNATCHFF 163
           + YTVSEK        L   ++YLLG SF+VK DNNATCHFF
Sbjct: 121 RRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNNATCHFF 162

[Close]

BLAST of Cmc08g0236621 vs. ExPASy TrEMBL
Match: A0A5A7T9P9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold744G00860 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.5e-62
Identity = 120/162 (74.07%), Postives = 135/162 (83.33%), Query Frame = 0


Query: 1   MKEGKIAAIRDWVIPKSVLELRSFLGLANYYQRFVEGFSKRASSLTELPKKDVQWSWTLE 60
           M+EGKIAAI DW +PKSVLELRSFLGLANYY+RFVEGFSKRASSLTEL KKDV W+W  E
Sbjct: 806 MEEGKIAAIHDWAMPKSVLELRSFLGLANYYRRFVEGFSKRASSLTELLKKDVNWNWDPE 865

Query: 61  CQATFDGLKKVMMEGPVLGIVDVTKPFKVEMDTFNYALGGVLLQNGHSIAYKSRKLNAAE 120
           CQA FDGLK+ +MEGP+LGI DVTKPF+VE D F+YALGGVLLQNGH I Y+SRKLNAAE
Sbjct: 866 CQAAFDGLKQALMEGPLLGIADVTKPFEVETDAFDYALGGVLLQNGHPITYESRKLNAAE 925

Query: 121 KWYTVSEKRDACSSTLLEGLKKYLLGFSFMVKADNNATCHFF 163
           + YTVSEK        L   ++YLLG SF+VK DN+ATCHFF
Sbjct: 926 RRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFF 967

[Close]

BLAST of Cmc08g0236621 vs. ExPASy TrEMBL
Match: A0A5D3BQE4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G001890 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 2.2e-61
Identity = 119/162 (73.46%), Postives = 132/162 (81.48%), Query Frame = 0


Query: 1    MKEGKIAAIRDWVIPKSVLELRSFLGLANYYQRFVEGFSKRASSLTELPKKDVQWSWTLE 60
            M+EGKIAAIRDW +PKSV ELRSFLGLANYY+RFVEGFSKRAS LTEL KKDV W+W  E
Sbjct: 855  MEEGKIAAIRDWAMPKSVSELRSFLGLANYYRRFVEGFSKRASPLTELLKKDVHWNWDPE 914

Query: 61   CQATFDGLKKVMMEGPVLGIVDVTKPFKVEMDTFNYALGGVLLQNGHSIAYKSRKLNAAE 120
            CQA FDGLK+ MMEGP+LGI DVTKPF+VE D  NYALGGVLLQNGH I Y+SRKLN AE
Sbjct: 915  CQAAFDGLKQAMMEGPLLGIADVTKPFEVETDASNYALGGVLLQNGHPITYESRKLNVAE 974

Query: 121  KWYTVSEKRDACSSTLLEGLKKYLLGFSFMVKADNNATCHFF 163
            + YTVSEK        L   ++YLLG SF+VK DN+ATCHFF
Sbjct: 975  RRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFF 1016

[Close]

BLAST of Cmc08g0236621 vs. ExPASy TrEMBL
Match: A0A5D3C9P8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00750 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 2.2e-61
Identity = 119/162 (73.46%), Postives = 134/162 (82.72%), Query Frame = 0


Query: 1    MKEGKIAAIRDWVIPKSVLELRSFLGLANYYQRFVEGFSKRASSLTELPKKDVQWSWTLE 60
            M+EGKIAAIRDW +PKSV ELRSFLGLANYY+RFVEGFSKRAS LTEL KKDV W+W  E
Sbjct: 846  MEEGKIAAIRDWAMPKSVSELRSFLGLANYYRRFVEGFSKRASPLTELLKKDVHWNWDPE 905

Query: 61   CQATFDGLKKVMMEGPVLGIVDVTKPFKVEMDTFNYALGGVLLQNGHSIAYKSRKLNAAE 120
            CQA FDGLK+ +MEGP+LGI DVTKPF+VE D  +YALGGVLLQNGH IAY+SRKLNAAE
Sbjct: 906  CQAAFDGLKQALMEGPLLGIADVTKPFEVETDASDYALGGVLLQNGHPIAYESRKLNAAE 965

Query: 121  KWYTVSEKRDACSSTLLEGLKKYLLGFSFMVKADNNATCHFF 163
            + YTVSEK        L   ++YLLG SF+VK DN+ATCHFF
Sbjct: 966  RRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFF 1007

[Close]

BLAST of Cmc08g0236621 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 68.6 bits (166), Expect = 5.5e-12
Identity = 36/93 (38.71%), Postives = 50/93 (53.76%), Query Frame = 0


Query: 5   KIAAIRDWVIPKSVLELRSFLGLANYYQRFVEGFSKRASSLTELPKKDVQWSWTLECQAT 64
           K+ A+  W  PK+  ELR FLGL  YY+RFV+ + K    LTEL KK+    WT      
Sbjct: 50  KLEAMVGWPEPKNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKN-SLKWTEMAALA 109

Query: 65  FDGLKKVMMEGPVLGIVDVTKPFKVEMDTFNYA 98
           F  LK  +   PVL + D+  PF   +  +N++
Sbjct: 110 FKALKGAVTTLPVLALPDLKLPFVTRVGKWNWS 141

The following BLAST results are available for this feature:

BLAST of Cmc08g0236621 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062487.1	1.0e-76	96.67	polyprotein [Cucumis melo var. makuwa] >TYK27397.1 polyprotein [Cucumis melo var...	[more]
KAA0032952.1	3.7e-63	75.93	reverse transcriptase [Cucumis melo var. makuwa] >TYK22015.1 reverse transcripta...	[more]
KAA0039608.1	3.2e-62	74.07	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK07954.1	4.6e-61	73.46	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK01597.1	4.6e-61	73.46	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of Cmc08g0236621 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	1.5e-19	36.18	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P10394	5.5e-17	31.29	Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaste...	[more]
Q8I7P9	3.9e-15	35.67	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
Q9UR07	1.1e-14	32.64	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	1.1e-14	32.64	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of Cmc08g0236621 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DUE5	4.9e-77	96.67	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G00810 PE...	[more]
A0A5A7SP58	1.8e-63	75.93	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold48...	[more]
A0A5A7T9P9	1.5e-62	74.07	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74...	[more]
A0A5D3BQE4	2.2e-61	73.46	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45...	[more]
A0A5D3C9P8	2.2e-61	73.46	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold26...	[more]

BLAST of Cmc08g0236621 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	5.5e-12	38.71	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 4..91 e-value: 4.0E-24 score: 86.4
IPR041577	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	PFAM	PF17919	RT_RNaseH_2	coord: 57..150 e-value: 1.8E-18 score: 66.4
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..140
None	No IPR available	PANTHER	PTHR24559:SF360	SUBFAMILY NOT NAMED	coord: 2..140
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 3..162

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0236621.1	Cmc08g0236621.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
biological_process	GO:0006413	translational initiation
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0003743	translation initiation factor activity