Cmc08g0233001 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0233001
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	enhancer of mRNA-decapping protein 4
Location	CMiso1.1chr08: 30147650 .. 30148320 (-)
RNA-Seq Expression	Cmc08g0233001
Synteny	Cmc08g0233001

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGAGAGATTTTTGTTAGAATAATAATCTTCTTTTGCACGATGCATTAAAATCTAGTTTTGAAGCATCAGTGATTCCAACCTTTGAAATGTCGTGCAAAACCATGTTTGAGCAAGTAGATTCTATTTTTCAAAAAGGACTGGTTGAACATTCAGCTACAACTCAACAACACTTTGACTCTTCACATTCTTCATTGGCACTTGCTTTGAGGGTAGAATTGTTGTGCCTAAACTTTTGATAGAATATAGATTTTACTCCTAGTTGTAAATAAGTGTTTCACTTTTTTAGTTACGGTGTAGCTTATCTCGTATGTGTGAAATGGTCATCTTTCTTTTATGGTTTGGTTATCTAAATTAATTATTGTTGATATTTACTTTTCAAAGGATGGCTGGACTTTCATCCATCTGATTTGCTGCTTGCAGAAGGATCAGTTTTGTGGAAAGAGGTTTGTTTGCTTGCTCATGTATTATATGTGTTTGCTTGCTTGCTTTTGTATTTGTGGAAAGACTTAAGTCCTCAATTTGCTTGCTCATGCTCTCGTATTATATGTGTTTTTGGATGCAATTGTCTATACTAATTGTTGGTTTTCTACGTCTAGAGGGTTATAAATTCGACCCAAATACGGAATGTATTTTTTTAAGAAATAATAATAATAGTCATCCGATGCTGTAA

mRNA sequence

TTGAGAGATTTTTGTTAGAATAATAATCTTCTTTTGCACGATGCATTAAAATCTAGTTTTGAAGCATCAGTGATTCCAACCTTTGAAATGTCGTGCAAAACCATGTTTGAGCAAGTAGATTCTATTTTTCAAAAAGGACTGGTTGAACATTCAGCTACAACTCAACAACACTTTGACTCTTCACATTCTTCATTGGCACTTGCTTTGAGGGATGGCTGGACTTTCATCCATCTGATTTGCTGCTTGCAGAAGGATCAGTTTTGTGGAAAGAGACTTAAGTCCTCAATTTGCTTGCTCATGCTCTCGTATTATATGTGTTTTTGGATGCAATTGTCTATACTAATTGTTGGTTTTCTACGTCTAGAGGGTTATAAATTCGACCCAAATACGGAATGTATTTTTTTAAGAAATAATAATAATAGTCATCCGATGCTGTAA

Coding sequence (CDS)

ATGTCGTGCAAAACCATGTTTGAGCAAGTAGATTCTATTTTTCAAAAAGGACTGGTTGAACATTCAGCTACAACTCAACAACACTTTGACTCTTCACATTCTTCATTGGCACTTGCTTTGAGGGATGGCTGGACTTTCATCCATCTGATTTGCTGCTTGCAGAAGGATCAGTTTTGTGGAAAGAGACTTAAGTCCTCAATTTGCTTGCTCATGCTCTCGTATTATATGTGTTTTTGGATGCAATTGTCTATACTAATTGTTGGTTTTCTACGTCTAGAGGGTTATAAATTCGACCCAAATACGGAATGTATTTTTTTAAGAAATAATAATAATAGTCATCCGATGCTGTAA

Protein sequence

MSCKTMFEQVDSIFQKGLVEHSATTQQHFDSSHSSLALALRDGWTFIHLICCLQKDQFCGKRLKSSICLLMLSYYMCFWMQLSILIVGFLRLEGYKFDPNTECIFLRNNNNSHPML

Homology

[Close]

BLAST of Cmc08g0233001 vs. NCBI nr
Match: XP_023553292.1 (enhancer of mRNA-decapping protein 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 78.6 bits (192), Expect = 4.0e-11
Identity = 38/42 (90.48%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 1    MSCKTMFEQVDSIFQKGLVEHSATTQQHFDSSHSSLALALRD 43
            MSCK MFEQVDS FQKGLVEHSA  QQHFDSSHSSLALALRD
Sbjct: 1175 MSCKAMFEQVDSTFQKGLVEHSAAAQQHFDSSHSSLALALRD 1216

[Close]

BLAST of Cmc08g0233001 vs. NCBI nr
Match: XP_008449007.1 (PREDICTED: enhancer of mRNA-decapping protein 4 [Cucumis melo])

HSP 1 Score: 78.6 bits (192), Expect = 4.0e-11
Identity = 38/42 (90.48%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 1    MSCKTMFEQVDSIFQKGLVEHSATTQQHFDSSHSSLALALRD 43
            MSCKTMFEQVDS FQKGLVEHSA  QQHFDSSHS LALALRD
Sbjct: 1179 MSCKTMFEQVDSTFQKGLVEHSAAAQQHFDSSHSPLALALRD 1220

[Close]

BLAST of Cmc08g0233001 vs. NCBI nr
Match: KAG6577530.1 (Enhancer of mRNA-decapping protein 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 78.6 bits (192), Expect = 4.0e-11
Identity = 38/42 (90.48%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 1    MSCKTMFEQVDSIFQKGLVEHSATTQQHFDSSHSSLALALRD 43
            MSCK MFEQVDS FQKGLVEHSA  QQHFDSSHSSLALALRD
Sbjct: 1171 MSCKAMFEQVDSTFQKGLVEHSAAAQQHFDSSHSSLALALRD 1212

[Close]

BLAST of Cmc08g0233001 vs. NCBI nr
Match: TYK19378.1 (enhancer of mRNA-decapping protein 4 [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 4.0e-11
Identity = 38/42 (90.48%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 1    MSCKTMFEQVDSIFQKGLVEHSATTQQHFDSSHSSLALALRD 43
            MSCKTMFEQVDS FQKGLVEHSA  QQHFDSSHS LALALRD
Sbjct: 1179 MSCKTMFEQVDSTFQKGLVEHSAAAQQHFDSSHSPLALALRD 1220

[Close]

BLAST of Cmc08g0233001 vs. NCBI nr
Match: XP_038905658.1 (enhancer of mRNA-decapping protein 4 isoform X1 [Benincasa hispida] >XP_038905659.1 enhancer of mRNA-decapping protein 4 isoform X1 [Benincasa hispida])

HSP 1 Score: 78.6 bits (192), Expect = 4.0e-11
Identity = 38/42 (90.48%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 1    MSCKTMFEQVDSIFQKGLVEHSATTQQHFDSSHSSLALALRD 43
            MSCKTMFEQVDS FQKGLVEHSA  QQHFDSSHS LALALRD
Sbjct: 1177 MSCKTMFEQVDSTFQKGLVEHSAAAQQHFDSSHSPLALALRD 1218

[Close]

BLAST of Cmc08g0233001 vs. ExPASy Swiss-Prot
Match: Q9LTT8 (Enhancer of mRNA-decapping protein 4 OS=Arabidopsis thaliana OX=3702 GN=VCS PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.8e-07
Identity = 24/44 (54.55%), Postives = 31/44 (70.45%), Query Frame = 0


Query: 2    SCKTMFEQVDSIFQKGLVEHSATTQQHFDSSHSSLALALRDGWT 46
            +CK MF+Q+DS FQKG+ EH+   QQ FDS HS LA  L++  T
Sbjct: 1109 ACKAMFDQIDSAFQKGIAEHTNAAQQRFDSGHSQLAHTLKESIT 1152

[Close]

BLAST of Cmc08g0233001 vs. ExPASy Swiss-Prot
Match: Q9LTT9 (Varicose-related protein OS=Arabidopsis thaliana OX=3702 GN=VCR PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.8e-06
Identity = 25/41 (60.98%), Postives = 30/41 (73.17%), Query Frame = 0


Query: 2    SCKTMFEQVDSIFQKGLVEHSATTQQHFDSSHSSLALALRD 43
            SCKTMFEQVDS  QKG+ +H++ TQQ  DS  S LA  LR+
Sbjct: 1110 SCKTMFEQVDSTLQKGIGKHTSATQQRIDSGQSQLAHTLRE 1150

[Close]

BLAST of Cmc08g0233001 vs. ExPASy TrEMBL
Match: A0A6J1L3M1 (enhancer of mRNA-decapping protein 4 OS=Cucurbita maxima OX=3661 GN=LOC111500222 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.0e-11
Identity = 38/42 (90.48%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 1    MSCKTMFEQVDSIFQKGLVEHSATTQQHFDSSHSSLALALRD 43
            MSCK MFEQVDS FQKGLVEHSA  QQHFDSSHSSLALALRD
Sbjct: 1175 MSCKAMFEQVDSTFQKGLVEHSAAAQQHFDSSHSSLALALRD 1216

[Close]

BLAST of Cmc08g0233001 vs. ExPASy TrEMBL
Match: A0A5D3D730 (Enhancer of mRNA-decapping protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G00070 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.0e-11
Identity = 38/42 (90.48%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 1    MSCKTMFEQVDSIFQKGLVEHSATTQQHFDSSHSSLALALRD 43
            MSCKTMFEQVDS FQKGLVEHSA  QQHFDSSHS LALALRD
Sbjct: 1179 MSCKTMFEQVDSTFQKGLVEHSAAAQQHFDSSHSPLALALRD 1220

[Close]

BLAST of Cmc08g0233001 vs. ExPASy TrEMBL
Match: A0A1S3BLP7 (enhancer of mRNA-decapping protein 4 OS=Cucumis melo OX=3656 GN=LOC103491009 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.0e-11
Identity = 38/42 (90.48%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 1    MSCKTMFEQVDSIFQKGLVEHSATTQQHFDSSHSSLALALRD 43
            MSCKTMFEQVDS FQKGLVEHSA  QQHFDSSHS LALALRD
Sbjct: 1179 MSCKTMFEQVDSTFQKGLVEHSAAAQQHFDSSHSPLALALRD 1220

[Close]

BLAST of Cmc08g0233001 vs. ExPASy TrEMBL
Match: A0A6J1CQH7 (enhancer of mRNA-decapping protein 4-like OS=Momordica charantia OX=3673 GN=LOC111013397 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.5e-11
Identity = 38/45 (84.44%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 1    MSCKTMFEQVDSIFQKGLVEHSATTQQHFDSSHSSLALALRDGWT 46
            MSCKTMFEQVDS FQKGLVEH+A  QQH DSSHSSLALALRD  T
Sbjct: 1176 MSCKTMFEQVDSTFQKGLVEHAAAVQQHLDSSHSSLALALRDSIT 1220

[Close]

BLAST of Cmc08g0233001 vs. ExPASy TrEMBL
Match: A0A6J1KYM7 (enhancer of mRNA-decapping protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111498323 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 5.7e-11
Identity = 37/42 (88.10%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 1    MSCKTMFEQVDSIFQKGLVEHSATTQQHFDSSHSSLALALRD 43
            MSCKTMFEQVDS FQKGLVEHSA  QQHFDSSHS LAL LRD
Sbjct: 1172 MSCKTMFEQVDSTFQKGLVEHSAVAQQHFDSSHSPLALTLRD 1213

[Close]

BLAST of Cmc08g0233001 vs. TAIR 10
Match: AT3G13300.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 56.2 bits (134), Expect = 2.0e-08
Identity = 24/44 (54.55%), Postives = 31/44 (70.45%), Query Frame = 0


Query: 2    SCKTMFEQVDSIFQKGLVEHSATTQQHFDSSHSSLALALRDGWT 46
            +CK MF+Q+DS FQKG+ EH+   QQ FDS HS LA  L++  T
Sbjct: 1109 ACKAMFDQIDSAFQKGIAEHTNAAQQRFDSGHSQLAHTLKESIT 1152

[Close]

BLAST of Cmc08g0233001 vs. TAIR 10
Match: AT3G13300.2 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 56.2 bits (134), Expect = 2.0e-08
Identity = 24/44 (54.55%), Postives = 31/44 (70.45%), Query Frame = 0


Query: 2    SCKTMFEQVDSIFQKGLVEHSATTQQHFDSSHSSLALALRDGWT 46
            +CK MF+Q+DS FQKG+ EH+   QQ FDS HS LA  L++  T
Sbjct: 1074 ACKAMFDQIDSAFQKGIAEHTNAAQQRFDSGHSQLAHTLKESIT 1117

[Close]

BLAST of Cmc08g0233001 vs. TAIR 10
Match: AT3G13290.1 (varicose-related )

HSP 1 Score: 53.5 bits (127), Expect = 1.3e-07
Identity = 25/41 (60.98%), Postives = 30/41 (73.17%), Query Frame = 0


Query: 2    SCKTMFEQVDSIFQKGLVEHSATTQQHFDSSHSSLALALRD 43
            SCKTMFEQVDS  QKG+ +H++ TQQ  DS  S LA  LR+
Sbjct: 1110 SCKTMFEQVDSTLQKGIGKHTSATQQRIDSGQSQLAHTLRE 1150

The following BLAST results are available for this feature:

BLAST of Cmc08g0233001 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023553292.1	4.0e-11	90.48	enhancer of mRNA-decapping protein 4 [Cucurbita pepo subsp. pepo]	[more]
XP_008449007.1	4.0e-11	90.48	PREDICTED: enhancer of mRNA-decapping protein 4 [Cucumis melo]	[more]
KAG6577530.1	4.0e-11	90.48	Enhancer of mRNA-decapping protein 4, partial [Cucurbita argyrosperma subsp. sor...	[more]
TYK19378.1	4.0e-11	90.48	enhancer of mRNA-decapping protein 4 [Cucumis melo var. makuwa]	[more]
XP_038905658.1	4.0e-11	90.48	enhancer of mRNA-decapping protein 4 isoform X1 [Benincasa hispida] >XP_03890565...	[more]

BLAST of Cmc08g0233001 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LTT8	2.8e-07	54.55	Enhancer of mRNA-decapping protein 4 OS=Arabidopsis thaliana OX=3702 GN=VCS PE=1...	[more]
Q9LTT9	1.8e-06	60.98	Varicose-related protein OS=Arabidopsis thaliana OX=3702 GN=VCR PE=2 SV=1	[more]

BLAST of Cmc08g0233001 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1L3M1	2.0e-11	90.48	enhancer of mRNA-decapping protein 4 OS=Cucurbita maxima OX=3661 GN=LOC111500222...	[more]
A0A5D3D730	2.0e-11	90.48	Enhancer of mRNA-decapping protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3BLP7	2.0e-11	90.48	enhancer of mRNA-decapping protein 4 OS=Cucumis melo OX=3656 GN=LOC103491009 PE=...	[more]
A0A6J1CQH7	2.5e-11	84.44	enhancer of mRNA-decapping protein 4-like OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A6J1KYM7	5.7e-11	88.10	enhancer of mRNA-decapping protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]

BLAST of Cmc08g0233001 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13300.1	2.0e-08	54.55	Transducin/WD40 repeat-like superfamily protein	[more]
AT3G13300.2	2.0e-08	54.55	Transducin/WD40 repeat-like superfamily protein	[more]
AT3G13290.1	1.3e-07	60.98	varicose-related	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR15598:SF11	WD40/YVTN REPEAT-LIKE-CONTAINING DOMAIN-CONTAINING PROTEIN-RELATED	coord: 1..42
IPR045152	Enhancer of mRNA-decapping protein 4-like	PANTHER	PTHR15598	ENHANCER OF MRNA-DECAPPING PROTEIN 4	coord: 1..42

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0233001.1	Cmc08g0233001.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031087	deadenylation-independent decapping of nuclear-transcribed mRNA
cellular_component	GO:0000932	P-body