Cmc08g0232971 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0232971
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty3/gypsy retrotransposon protein
Location	CMiso1.1chr08: 30117749 .. 30118468 (+)
RNA-Seq Expression	Cmc08g0232971
Synteny	Cmc08g0232971

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGAGCACTTGCAACACTTGGAGATTGTGCTGGAAGTACTGCGTGAGCATAAACTATATGCTAACAAGAAAAAATGCAGTTTTGCTTACCAAAGAGTTGAGTATCTTGGCCACATTGTTTCGAGAAAAGGAGTGGAGGTTGATCCAAAAAAGATCAGATCAATCAAGCAATGCCCTGTTCCAACCAATGTGCGAGAAGTAAGGGGATTTCTTGGGCTAACCGGATACTATAGAAGGTTCATTCAACACTATGGTTCCATTGCGGCTCCTTTAACTCAATTGTTAAAGTTGGGAGCATTTAAGTGGAATGATAAAGCTCAATTAGCTTTCACAAGACTGCAAGAAGCCATGATGACATTTCCCATGTTAGCATTGCCTGACTTTAGTGTGCCATTTGAAGTTGAAAAGGATGCTTCAGGGTATGGTGCAGGGGCGATATTAATGCAGAATAACAGGCCAATAGCATTCTTAAATCATACATTAACCCTAAGAAATTTGGCGAAGCCTGTGTATGAGAGAGAGCTAATGGTTGTAGTATCGGCTGTTCAACGTTTGAGACCGTATTTGTTGGGGAGAAAGTTCTTAGTGAAGACTGACCAAAGATCTCTTAAGTTCCTGCTTAAACAAAGGGTGATTCAGCCTCAGTATCAAAAGTGGATTGCAAAGTTGTTGGGTTACTCATTTGAAGTTTGTTTACAAGCTTGGGTTGGAGAATGA

mRNA sequence

ATGGATGAGCACTTGCAACACTTGGAGATTGTGCTGGAAGTACTGCGTGAGCATAAACTATATGCTAACAAGAAAAAATGCAGTTTTGCTTACCAAAGAGTTGAGTATCTTGGCCACATTGTTTCGAGAAAAGGAGTGGAGGTTGATCCAAAAAAGATCAGATCAATCAAGCAATGCCCTGTTCCAACCAATGTGCGAGAAGTAAGGGGATTTCTTGGGCTAACCGGATACTATAGAAGGTTCATTCAACACTATGGTTCCATTGCGGCTCCTTTAACTCAATTGTTAAAGTTGGGAGCATTTAAGTGGAATGATAAAGCTCAATTAGCTTTCACAAGACTGCAAGAAGCCATGATGACATTTCCCATGTTAGCATTGCCTGACTTTAGTGTGCCATTTGAAGTTGAAAAGGATGCTTCAGGGTATGGTGCAGGGGCGATATTAATGCAGAATAACAGGCCAATAGCATTCTTAAATCATACATTAACCCTAAGAAATTTGGCGAAGCCTGTGTATGAGAGAGAGCTAATGGTTGTAGTATCGGCTGTTCAACGTTTGAGACCGTATTTGTTGGGGAGAAAGTTCTTAGTGAAGACTGACCAAAGATCTCTTAAGTTCCTGCTTAAACAAAGGGTGATTCAGCCTCAGTATCAAAAGTGGATTGCAAAGTTGTTGGGTTACTCATTTGAAGTTTGTTTACAAGCTTGGGTTGGAGAATGA

Coding sequence (CDS)

ATGGATGAGCACTTGCAACACTTGGAGATTGTGCTGGAAGTACTGCGTGAGCATAAACTATATGCTAACAAGAAAAAATGCAGTTTTGCTTACCAAAGAGTTGAGTATCTTGGCCACATTGTTTCGAGAAAAGGAGTGGAGGTTGATCCAAAAAAGATCAGATCAATCAAGCAATGCCCTGTTCCAACCAATGTGCGAGAAGTAAGGGGATTTCTTGGGCTAACCGGATACTATAGAAGGTTCATTCAACACTATGGTTCCATTGCGGCTCCTTTAACTCAATTGTTAAAGTTGGGAGCATTTAAGTGGAATGATAAAGCTCAATTAGCTTTCACAAGACTGCAAGAAGCCATGATGACATTTCCCATGTTAGCATTGCCTGACTTTAGTGTGCCATTTGAAGTTGAAAAGGATGCTTCAGGGTATGGTGCAGGGGCGATATTAATGCAGAATAACAGGCCAATAGCATTCTTAAATCATACATTAACCCTAAGAAATTTGGCGAAGCCTGTGTATGAGAGAGAGCTAATGGTTGTAGTATCGGCTGTTCAACGTTTGAGACCGTATTTGTTGGGGAGAAAGTTCTTAGTGAAGACTGACCAAAGATCTCTTAAGTTCCTGCTTAAACAAAGGGTGATTCAGCCTCAGTATCAAAAGTGGATTGCAAAGTTGTTGGGTTACTCATTTGAAGTTTGTTTACAAGCTTGGGTTGGAGAATGA

Protein sequence

MDEHLQHLEIVLEVLREHKLYANKKKCSFAYQRVEYLGHIVSRKGVEVDPKKIRSIKQCPVPTNVREVRGFLGLTGYYRRFIQHYGSIAAPLTQLLKLGAFKWNDKAQLAFTRLQEAMMTFPMLALPDFSVPFEVEKDASGYGAGAILMQNNRPIAFLNHTLTLRNLAKPVYERELMVVVSAVQRLRPYLLGRKFLVKTDQRSLKFLLKQRVIQPQYQKWIAKLLGYSFEVCLQAWVGE

Homology

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BLAST of Cmc08g0232971 vs. NCBI nr
Match: TYK21761.1 (Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 421.0 bits (1081), Expect = 6.8e-114
Identity = 211/212 (99.53%), Postives = 212/212 (100.00%), Query Frame = 0


Query: 1   MDEHLQHLEIVLEVLREHKLYANKKKCSFAYQRVEYLGHIVSRKGVEVDPKKIRSIKQCP 60
           MDEHLQHLEIVLEVLREHKLYANKKKCSFAYQRVEYLGHIVSRKGVEVDPKKIRSIKQCP
Sbjct: 1   MDEHLQHLEIVLEVLREHKLYANKKKCSFAYQRVEYLGHIVSRKGVEVDPKKIRSIKQCP 60

Query: 61  VPTNVREVRGFLGLTGYYRRFIQHYGSIAAPLTQLLKLGAFKWNDKAQLAFTRLQEAMMT 120
           VPTNVREVRGFLGLTGYYRRFIQHYGSIAAPLTQLLKLGAFKWNDKAQLAFTRLQEAMMT
Sbjct: 61  VPTNVREVRGFLGLTGYYRRFIQHYGSIAAPLTQLLKLGAFKWNDKAQLAFTRLQEAMMT 120

Query: 121 FPMLALPDFSVPFEVEKDASGYGAGAILMQNNRPIAFLNHTLTLRNLAKPVYERELMVVV 180
           FPMLALPDFSVPFEVEKDASGYGAGAILMQNNRPIAFLNHTLTLRNLAKPVYERELMVVV
Sbjct: 121 FPMLALPDFSVPFEVEKDASGYGAGAILMQNNRPIAFLNHTLTLRNLAKPVYERELMVVV 180

Query: 181 SAVQRLRPYLLGRKFLVKTDQRSLKFLLKQRV 213
           SAVQRLRPYLLGRKFLVKTDQRSLKFLLKQR+
Sbjct: 181 SAVQRLRPYLLGRKFLVKTDQRSLKFLLKQRL 212

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BLAST of Cmc08g0232971 vs. NCBI nr
Match: KAA0047225.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 419.1 bits (1076), Expect = 2.6e-113
Identity = 210/212 (99.06%), Postives = 212/212 (100.00%), Query Frame = 0


Query: 1   MDEHLQHLEIVLEVLREHKLYANKKKCSFAYQRVEYLGHIVSRKGVEVDPKKIRSIKQCP 60
           MDEHLQHLEIVLEVLREHKLYANKKKCSFAYQRVEYLGHIVSRKGVEVDPKKIRSIKQCP
Sbjct: 233 MDEHLQHLEIVLEVLREHKLYANKKKCSFAYQRVEYLGHIVSRKGVEVDPKKIRSIKQCP 292

Query: 61  VPTNVREVRGFLGLTGYYRRFIQHYGSIAAPLTQLLKLGAFKWNDKAQLAFTRLQEAMMT 120
           VPTNVREVRGFLGLTGYYRRFIQHYGSIAAPLTQLLKLGAFKWNDKAQLAFTRLQEAMMT
Sbjct: 293 VPTNVREVRGFLGLTGYYRRFIQHYGSIAAPLTQLLKLGAFKWNDKAQLAFTRLQEAMMT 352

Query: 121 FPMLALPDFSVPFEVEKDASGYGAGAILMQNNRPIAFLNHTLTLRNLAKPVYERELMVVV 180
           FPMLALPDFSVPFEVEKDASGYGAGAILMQNNRPIAFLNHTLTLR+LAKPVYERELMVVV
Sbjct: 353 FPMLALPDFSVPFEVEKDASGYGAGAILMQNNRPIAFLNHTLTLRDLAKPVYERELMVVV 412

Query: 181 SAVQRLRPYLLGRKFLVKTDQRSLKFLLKQRV 213
           SAVQRLRPYLLGRKFLVKTDQRSLKFLLKQR+
Sbjct: 413 SAVQRLRPYLLGRKFLVKTDQRSLKFLLKQRL 444

[Close]

BLAST of Cmc08g0232971 vs. NCBI nr
Match: KAA0031986.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK16806.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 347.8 bits (891), Expect = 7.3e-92
Identity = 166/231 (71.86%), Postives = 201/231 (87.01%), Query Frame = 0


Query: 1   MDEHLQHLEIVLEVLREHKLYANKKKCSFAYQRVEYLGHIVSRKGVEVDPKKIRSIKQCP 60
           ++EHLQHLE+VLEVLRE++LYAN  KC FA  +VEYLGHI+S KGVEVDP+KIRSIK+ P
Sbjct: 622 LEEHLQHLELVLEVLRENELYANMNKCEFAKTKVEYLGHIISGKGVEVDPEKIRSIKEWP 681

Query: 61  VPTNVREVRGFLGLTGYYRRFIQHYGSIAAPLTQLLKLGAFKWNDKAQLAFTRLQEAMMT 120
           VPTNVREVRGFLGLTGYYRRF+++YGS+A PLTQLLK G ++W   A   F +L+ AMMT
Sbjct: 682 VPTNVREVRGFLGLTGYYRRFVRNYGSMATPLTQLLKKGVYEWTAAAHEVFEKLKVAMMT 741

Query: 121 FPMLALPDFSVPFEVEKDASGYGAGAILMQNNRPIAFLNHTLTLRNLAKPVYERELMVVV 180
            P+LALPDFS+PFE+E DASGYG GA+L+QNNRPIA+ + TL +R  AK VYERELM VV
Sbjct: 742 LPILALPDFSLPFEIETDASGYGVGAVLIQNNRPIAYFSQTLAMRGRAKSVYERELMAVV 801

Query: 181 SAVQRLRPYLLGRKFLVKTDQRSLKFLLKQRVIQPQYQKWIAKLLGYSFEV 232
            AVQR RPYLLG++F+VKTDQ+SLKFLL+QRVIQPQ+Q+W+AKLLGY+F+V
Sbjct: 802 LAVQRWRPYLLGKRFVVKTDQQSLKFLLEQRVIQPQHQRWVAKLLGYNFDV 852

[Close]

BLAST of Cmc08g0232971 vs. NCBI nr
Match: KAA0038243.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 345.5 bits (885), Expect = 3.6e-91
Identity = 161/231 (69.70%), Postives = 201/231 (87.01%), Query Frame = 0


Query: 1   MDEHLQHLEIVLEVLREHKLYANKKKCSFAYQRVEYLGHIVSRKGVEVDPKKIRSIKQCP 60
           M+EH QHLE+VLE+LRE +LYAN  KC FA  R+ YLGH +S+KG+EVDP+KIR++K+ P
Sbjct: 199 MEEHGQHLEVVLEILRESELYANFDKCHFAKSRISYLGHYISKKGIEVDPEKIRAVKEWP 258

Query: 61  VPTNVREVRGFLGLTGYYRRFIQHYGSIAAPLTQLLKLGAFKWNDKAQLAFTRLQEAMMT 120
            P NVRE+RGFLGLTGYYRRF+Q+YGSI+APLTQLLK GA+KW ++ + AF +L++AMMT
Sbjct: 259 APANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLKSGAYKWTEETEAAFEKLKKAMMT 318

Query: 121 FPMLALPDFSVPFEVEKDASGYGAGAILMQNNRPIAFLNHTLTLRNLAKPVYERELMVVV 180
            P+LA+PDF++PFE+E DASG+G GA+L+Q+ RP+A+ +  L+ R+ A+PVYERELM VV
Sbjct: 319 LPVLAMPDFNLPFEIESDASGFGVGAVLVQDKRPVAYFSKVLSTRDRARPVYERELMAVV 378

Query: 181 SAVQRLRPYLLGRKFLVKTDQRSLKFLLKQRVIQPQYQKWIAKLLGYSFEV 232
            AVQR RPYLLGRKF VKTDQRSLKFLL+QRVIQPQYQ+WIAKLLGYSFEV
Sbjct: 379 WAVQRWRPYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEV 429

[Close]

BLAST of Cmc08g0232971 vs. NCBI nr
Match: KAA0025132.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 344.4 bits (882), Expect = 8.1e-91
Identity = 160/231 (69.26%), Postives = 201/231 (87.01%), Query Frame = 0


Query: 1    MDEHLQHLEIVLEVLREHKLYANKKKCSFAYQRVEYLGHIVSRKGVEVDPKKIRSIKQCP 60
            M+EH QHLE+VLE+LRE +LYAN  KC FA  R+ YLGH +S+KG+EVDP+KIR++K+ P
Sbjct: 1105 MEEHGQHLEVVLEILRESELYANLDKCHFAKTRISYLGHYISKKGIEVDPEKIRAVKEWP 1164

Query: 61   VPTNVREVRGFLGLTGYYRRFIQHYGSIAAPLTQLLKLGAFKWNDKAQLAFTRLQEAMMT 120
             P NVRE+RGFLGLTGYYRRF+Q+YGSI+APLTQLLK GA+KW ++ + AF +L++AMMT
Sbjct: 1165 APANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLKSGAYKWTEETETAFEKLKKAMMT 1224

Query: 121  FPMLALPDFSVPFEVEKDASGYGAGAILMQNNRPIAFLNHTLTLRNLAKPVYERELMVVV 180
             P+LA+PDF++PFE+E DASG+G GA+L+Q+ +P+A+ +  L+ R+ A+PVYERELM VV
Sbjct: 1225 LPVLAMPDFNLPFEIESDASGFGVGAVLVQDKKPVAYFSKVLSTRDRARPVYERELMAVV 1284

Query: 181  SAVQRLRPYLLGRKFLVKTDQRSLKFLLKQRVIQPQYQKWIAKLLGYSFEV 232
             AVQR RPYLLGRKF VKTDQRSLKFLL+QRVIQPQYQ+WIAKLLGYSFEV
Sbjct: 1285 WAVQRWRPYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEV 1335

[Close]

BLAST of Cmc08g0232971 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.2e-39
Identity = 86/233 (36.91%), Postives = 134/233 (57.51%), Query Frame = 0


Query: 1   MDEHLQHLEIVLEVLREHKLYANKKKCSFAYQRVEYLGHIVSRKGVEVDPKKIRSIKQCP 60
           + EHL  +++V   L +  L     KC F  +   +LGHIV+  G++ +P K+++I   P
Sbjct: 374 LTEHLNSIQLVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYP 433

Query: 61  VPTNVREVRGFLGLTGYYRRFIQHYGSIAAPLTQLLKLGAFKWNDKAQL--AFTRLQEAM 120
           +PT  +E+R FLGLTGYYR+FI +Y  IA P+T  LK        K +   AF +L+  +
Sbjct: 434 IPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALI 493

Query: 121 MTFPMLALPDFSVPFEVEKDASGYGAGAILMQNNRPIAFLNHTLTLRNLAKPVYERELMV 180
           +  P+L LPDF   F +  DAS    GA+L QN  PI+F++ TL    L     E+EL+ 
Sbjct: 494 IRDPILQLPDFEKKFVLTTDASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKELLA 553

Query: 181 VVSAVQRLRPYLLGRKFLVKTDQRSLKFLLKQRVIQPQYQKWIAKLLGYSFEV 232
           +V A +  R YLLGR+FL+ +D + L++L   +    + ++W  +L  Y F++
Sbjct: 554 IVWATKTFRHYLLGRQFLIASDHQPLRWLHNLKEPGAKLERWRVRLSEYQFKI 606

[Close]

BLAST of Cmc08g0232971 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.0e-39
Identity = 82/233 (35.19%), Postives = 137/233 (58.80%), Query Frame = 0


Query: 1   MDEHLQHLEIVLEVLREHKLYANKKKCSFAYQRVEYLGHIVSRKGVEVDPKKIRSIKQCP 60
           +DEHLQ L +V E L +  L     KC F  Q   +LGH+++  G++ +P+KI +I++ P
Sbjct: 375 LDEHLQSLGLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYP 434

Query: 61  VPTNVREVRGFLGLTGYYRRFIQHYGSIAAPLTQLLK--LGAFKWNDKAQLAFTRLQEAM 120
           +PT  +E++ FLGLTGYYR+FI ++  IA P+T+ LK  +     N +   AF +L+  +
Sbjct: 435 IPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLI 494

Query: 121 MTFPMLALPDFSVPFEVEKDASGYGAGAILMQNNRPIAFLNHTLTLRNLAKPVYERELMV 180
              P+L +PDF+  F +  DAS    GA+L Q+  P+++++ TL    +     E+EL+ 
Sbjct: 495 SEDPILKVPDFTKKFTLTTDASDVALGAVLSQDGHPLSYISRTLNEHEINYSTIEKELLA 554

Query: 181 VVSAVQRLRPYLLGRKFLVKTDQRSLKFLLKQRVIQPQYQKWIAKLLGYSFEV 232
           +V A +  R YLLGR F + +D + L +L + +    +  +W  KL  + F++
Sbjct: 555 IVWATKTFRHYLLGRHFEISSDHQPLSWLYRMKDPNSKLTRWRVKLSEFDFDI 607

[Close]

BLAST of Cmc08g0232971 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 4.3e-34
Identity = 84/247 (34.01%), Postives = 140/247 (56.68%), Query Frame = 0


Query: 2   DEHLQHLEIVLEVLREHKLYANKKKCSFAYQRVEYLGHIVSRKGVEVDPKKIRSIKQCPV 61
           D H ++L +VL  L +  L  N +K  F   +VE+LG+IV+  G++ DPKK+R+I + P 
Sbjct: 292 DTHWKNLRLVLASLSKANLQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPP 351

Query: 62  PTNVREVRGFLGLTGYYRRFIQHYGSIAAPLTQLLK--LGAFKWNDKAQLAFTRLQEAMM 121
           PT+V+E++ FLG+T YYR+FIQ Y  +A PLT L +      K +  +++  T  + A+ 
Sbjct: 352 PTSVKELKRFLGMTSYYRKFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQ 411

Query: 122 TF----------PMLALPDFSVPFEVEKDASGYGAGAILMQN----NRPIAFLNHTLTLR 181
           +F           +LA P F+ PF +  DAS +  GA+L Q+    +RPIA+++ +L   
Sbjct: 412 SFNDLKSILCSSEILAFPCFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKT 471

Query: 182 NLAKPVYERELMVVVSAVQRLRPYLLGRKFL-VKTDQRSLKFLLKQRVIQPQYQKWIAKL 232
                  E+E++ ++ ++  LR YL G   + V TD + L F L  R    + ++W A++
Sbjct: 472 EENYATIEKEMLAIIWSLDNLRAYLYGAGTIKVYTDHQPLTFALGNRNFNAKLKRWKARI 531

[Close]

BLAST of Cmc08g0232971 vs. ExPASy Swiss-Prot
Match: P92523 (Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 GN=AtMg00860 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 9.5e-34
Identity = 66/131 (50.38%), Postives = 92/131 (70.23%), Query Frame = 0


Query: 5   LQHLEIVLEVLREHKLYANKKKCSFAYQRVEYLG--HIVSRKGVEVDPKKIRSIKQCPVP 64
           + HL +VL++  +H+ YAN+KKC+F   ++ YLG  HI+S +GV  DP K+ ++   P P
Sbjct: 1   MNHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEP 60

Query: 65  TNVREVRGFLGLTGYYRRFIQHYGSIAAPLTQLLKLGAFKWNDKAQLAFTRLQEAMMTFP 124
            N  E+RGFLGLTGYYRRF+++YG I  PLT+LLK  + KW + A LAF  L+ A+ T P
Sbjct: 61  KNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALKGAVTTLP 120

Query: 125 MLALPDFSVPF 134
           +LALPD  +PF
Sbjct: 121 VLALPDLKLPF 131

[Close]

BLAST of Cmc08g0232971 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.5e-31
Identity = 80/232 (34.48%), Postives = 132/232 (56.90%), Query Frame = 0


Query: 3   EHLQHLEIVLEVLREHKLYANKKKCSFAYQRVEYLGHIVSRKGVEVDPKKIRSIKQCPVP 62
           +H++H++ VL+ L +  +  +++K  F  + VEYLG IVS+ G + DP+K+++I++ P P
Sbjct: 352 DHVRHIDTVLKCLIDANMRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEP 411

Query: 63  TNVREVRGFLGLTGYYRRFIQHYGSIAAPLTQLL------------KLGAFKWNDKAQLA 122
             V +VR FLGL  YYR FI+ + +IA P+T +L            K    ++N+  + A
Sbjct: 412 DCVYKVRSFLGLASYYRVFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNA 471

Query: 123 FTRLQEAMMTFP-MLALPDFSVPFEVEKDASGYGAGAILMQNNRPIAFLNHTLTLRNLAK 182
           F RL+  + +   +L  PDF  PF++  DAS  G GA+L Q  RPI  ++ TL       
Sbjct: 472 FQRLRNILASEDVILKYPDFKKPFDLTTDASASGIGAVLSQEGRPITMISRTLKQPEQNY 531

Query: 183 PVYERELMVVVSAVQRLRPYLLG-RKFLVKTDQRSLKFLLKQRVIQPQYQKW 221
              EREL+ +V A+ +L+ +L G R+  + TD + L F +  R    + ++W
Sbjct: 532 ATNERELLAIVWALGKLQNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRW 583

[Close]

BLAST of Cmc08g0232971 vs. ExPASy TrEMBL
Match: A0A5D3DDL8 (Transposon Tf2-6 polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1721G00090 PE=4 SV=1)

HSP 1 Score: 421.0 bits (1081), Expect = 3.3e-114
Identity = 211/212 (99.53%), Postives = 212/212 (100.00%), Query Frame = 0


Query: 1   MDEHLQHLEIVLEVLREHKLYANKKKCSFAYQRVEYLGHIVSRKGVEVDPKKIRSIKQCP 60
           MDEHLQHLEIVLEVLREHKLYANKKKCSFAYQRVEYLGHIVSRKGVEVDPKKIRSIKQCP
Sbjct: 1   MDEHLQHLEIVLEVLREHKLYANKKKCSFAYQRVEYLGHIVSRKGVEVDPKKIRSIKQCP 60

Query: 61  VPTNVREVRGFLGLTGYYRRFIQHYGSIAAPLTQLLKLGAFKWNDKAQLAFTRLQEAMMT 120
           VPTNVREVRGFLGLTGYYRRFIQHYGSIAAPLTQLLKLGAFKWNDKAQLAFTRLQEAMMT
Sbjct: 61  VPTNVREVRGFLGLTGYYRRFIQHYGSIAAPLTQLLKLGAFKWNDKAQLAFTRLQEAMMT 120

Query: 121 FPMLALPDFSVPFEVEKDASGYGAGAILMQNNRPIAFLNHTLTLRNLAKPVYERELMVVV 180
           FPMLALPDFSVPFEVEKDASGYGAGAILMQNNRPIAFLNHTLTLRNLAKPVYERELMVVV
Sbjct: 121 FPMLALPDFSVPFEVEKDASGYGAGAILMQNNRPIAFLNHTLTLRNLAKPVYERELMVVV 180

Query: 181 SAVQRLRPYLLGRKFLVKTDQRSLKFLLKQRV 213
           SAVQRLRPYLLGRKFLVKTDQRSLKFLLKQR+
Sbjct: 181 SAVQRLRPYLLGRKFLVKTDQRSLKFLLKQRL 212

[Close]

BLAST of Cmc08g0232971 vs. ExPASy TrEMBL
Match: A0A5A7U0Q5 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G00150 PE=4 SV=1)

HSP 1 Score: 419.1 bits (1076), Expect = 1.3e-113
Identity = 210/212 (99.06%), Postives = 212/212 (100.00%), Query Frame = 0


Query: 1   MDEHLQHLEIVLEVLREHKLYANKKKCSFAYQRVEYLGHIVSRKGVEVDPKKIRSIKQCP 60
           MDEHLQHLEIVLEVLREHKLYANKKKCSFAYQRVEYLGHIVSRKGVEVDPKKIRSIKQCP
Sbjct: 233 MDEHLQHLEIVLEVLREHKLYANKKKCSFAYQRVEYLGHIVSRKGVEVDPKKIRSIKQCP 292

Query: 61  VPTNVREVRGFLGLTGYYRRFIQHYGSIAAPLTQLLKLGAFKWNDKAQLAFTRLQEAMMT 120
           VPTNVREVRGFLGLTGYYRRFIQHYGSIAAPLTQLLKLGAFKWNDKAQLAFTRLQEAMMT
Sbjct: 293 VPTNVREVRGFLGLTGYYRRFIQHYGSIAAPLTQLLKLGAFKWNDKAQLAFTRLQEAMMT 352

Query: 121 FPMLALPDFSVPFEVEKDASGYGAGAILMQNNRPIAFLNHTLTLRNLAKPVYERELMVVV 180
           FPMLALPDFSVPFEVEKDASGYGAGAILMQNNRPIAFLNHTLTLR+LAKPVYERELMVVV
Sbjct: 353 FPMLALPDFSVPFEVEKDASGYGAGAILMQNNRPIAFLNHTLTLRDLAKPVYERELMVVV 412

Query: 181 SAVQRLRPYLLGRKFLVKTDQRSLKFLLKQRV 213
           SAVQRLRPYLLGRKFLVKTDQRSLKFLLKQR+
Sbjct: 413 SAVQRLRPYLLGRKFLVKTDQRSLKFLLKQRL 444

[Close]

BLAST of Cmc08g0232971 vs. ExPASy TrEMBL
Match: A0A5A7SPQ8 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00710 PE=4 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 3.6e-92
Identity = 166/231 (71.86%), Postives = 201/231 (87.01%), Query Frame = 0


Query: 1   MDEHLQHLEIVLEVLREHKLYANKKKCSFAYQRVEYLGHIVSRKGVEVDPKKIRSIKQCP 60
           ++EHLQHLE+VLEVLRE++LYAN  KC FA  +VEYLGHI+S KGVEVDP+KIRSIK+ P
Sbjct: 622 LEEHLQHLELVLEVLRENELYANMNKCEFAKTKVEYLGHIISGKGVEVDPEKIRSIKEWP 681

Query: 61  VPTNVREVRGFLGLTGYYRRFIQHYGSIAAPLTQLLKLGAFKWNDKAQLAFTRLQEAMMT 120
           VPTNVREVRGFLGLTGYYRRF+++YGS+A PLTQLLK G ++W   A   F +L+ AMMT
Sbjct: 682 VPTNVREVRGFLGLTGYYRRFVRNYGSMATPLTQLLKKGVYEWTAAAHEVFEKLKVAMMT 741

Query: 121 FPMLALPDFSVPFEVEKDASGYGAGAILMQNNRPIAFLNHTLTLRNLAKPVYERELMVVV 180
            P+LALPDFS+PFE+E DASGYG GA+L+QNNRPIA+ + TL +R  AK VYERELM VV
Sbjct: 742 LPILALPDFSLPFEIETDASGYGVGAVLIQNNRPIAYFSQTLAMRGRAKSVYERELMAVV 801

Query: 181 SAVQRLRPYLLGRKFLVKTDQRSLKFLLKQRVIQPQYQKWIAKLLGYSFEV 232
            AVQR RPYLLG++F+VKTDQ+SLKFLL+QRVIQPQ+Q+W+AKLLGY+F+V
Sbjct: 802 LAVQRWRPYLLGKRFVVKTDQQSLKFLLEQRVIQPQHQRWVAKLLGYNFDV 852

[Close]

BLAST of Cmc08g0232971 vs. ExPASy TrEMBL
Match: A0A5A7T5N7 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G00890 PE=4 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 1.8e-91
Identity = 161/231 (69.70%), Postives = 201/231 (87.01%), Query Frame = 0


Query: 1   MDEHLQHLEIVLEVLREHKLYANKKKCSFAYQRVEYLGHIVSRKGVEVDPKKIRSIKQCP 60
           M+EH QHLE+VLE+LRE +LYAN  KC FA  R+ YLGH +S+KG+EVDP+KIR++K+ P
Sbjct: 199 MEEHGQHLEVVLEILRESELYANFDKCHFAKSRISYLGHYISKKGIEVDPEKIRAVKEWP 258

Query: 61  VPTNVREVRGFLGLTGYYRRFIQHYGSIAAPLTQLLKLGAFKWNDKAQLAFTRLQEAMMT 120
            P NVRE+RGFLGLTGYYRRF+Q+YGSI+APLTQLLK GA+KW ++ + AF +L++AMMT
Sbjct: 259 APANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLKSGAYKWTEETEAAFEKLKKAMMT 318

Query: 121 FPMLALPDFSVPFEVEKDASGYGAGAILMQNNRPIAFLNHTLTLRNLAKPVYERELMVVV 180
            P+LA+PDF++PFE+E DASG+G GA+L+Q+ RP+A+ +  L+ R+ A+PVYERELM VV
Sbjct: 319 LPVLAMPDFNLPFEIESDASGFGVGAVLVQDKRPVAYFSKVLSTRDRARPVYERELMAVV 378

Query: 181 SAVQRLRPYLLGRKFLVKTDQRSLKFLLKQRVIQPQYQKWIAKLLGYSFEV 232
            AVQR RPYLLGRKF VKTDQRSLKFLL+QRVIQPQYQ+WIAKLLGYSFEV
Sbjct: 379 WAVQRWRPYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEV 429

[Close]

BLAST of Cmc08g0232971 vs. ExPASy TrEMBL
Match: A0A5A7SIV7 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold124G00310 PE=4 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 3.9e-91
Identity = 160/231 (69.26%), Postives = 201/231 (87.01%), Query Frame = 0


Query: 1    MDEHLQHLEIVLEVLREHKLYANKKKCSFAYQRVEYLGHIVSRKGVEVDPKKIRSIKQCP 60
            M+EH QHLE+VLE+LRE +LYAN  KC FA  R+ YLGH +S+KG+EVDP+KIR++K+ P
Sbjct: 1105 MEEHGQHLEVVLEILRESELYANLDKCHFAKTRISYLGHYISKKGIEVDPEKIRAVKEWP 1164

Query: 61   VPTNVREVRGFLGLTGYYRRFIQHYGSIAAPLTQLLKLGAFKWNDKAQLAFTRLQEAMMT 120
             P NVRE+RGFLGLTGYYRRF+Q+YGSI+APLTQLLK GA+KW ++ + AF +L++AMMT
Sbjct: 1165 APANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLKSGAYKWTEETETAFEKLKKAMMT 1224

Query: 121  FPMLALPDFSVPFEVEKDASGYGAGAILMQNNRPIAFLNHTLTLRNLAKPVYERELMVVV 180
             P+LA+PDF++PFE+E DASG+G GA+L+Q+ +P+A+ +  L+ R+ A+PVYERELM VV
Sbjct: 1225 LPVLAMPDFNLPFEIESDASGFGVGAVLVQDKKPVAYFSKVLSTRDRARPVYERELMAVV 1284

Query: 181  SAVQRLRPYLLGRKFLVKTDQRSLKFLLKQRVIQPQYQKWIAKLLGYSFEV 232
             AVQR RPYLLGRKF VKTDQRSLKFLL+QRVIQPQYQ+WIAKLLGYSFEV
Sbjct: 1285 WAVQRWRPYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEV 1335

[Close]

BLAST of Cmc08g0232971 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 145.2 bits (365), Expect = 6.7e-35
Identity = 66/131 (50.38%), Postives = 92/131 (70.23%), Query Frame = 0


Query: 5   LQHLEIVLEVLREHKLYANKKKCSFAYQRVEYLG--HIVSRKGVEVDPKKIRSIKQCPVP 64
           + HL +VL++  +H+ YAN+KKC+F   ++ YLG  HI+S +GV  DP K+ ++   P P
Sbjct: 1   MNHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEP 60

Query: 65  TNVREVRGFLGLTGYYRRFIQHYGSIAAPLTQLLKLGAFKWNDKAQLAFTRLQEAMMTFP 124
            N  E+RGFLGLTGYYRRF+++YG I  PLT+LLK  + KW + A LAF  L+ A+ T P
Sbjct: 61  KNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALKGAVTTLP 120

Query: 125 MLALPDFSVPF 134
           +LALPD  +PF
Sbjct: 121 VLALPDLKLPF 131

The following BLAST results are available for this feature:

BLAST of Cmc08g0232971 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK21761.1	6.8e-114	99.53	Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa]	[more]
KAA0047225.1	2.6e-113	99.06	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0031986.1	7.3e-92	71.86	Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK16806.1 Tran...	[more]
KAA0038243.1	3.6e-91	69.70	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0025132.1	8.1e-91	69.26	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc08g0232971 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	1.2e-39	36.91	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	2.0e-39	35.19	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q8I7P9	4.3e-34	34.01	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P92523	9.5e-34	50.38	Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 ...	[more]
P10401	1.5e-31	34.48	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]

BLAST of Cmc08g0232971 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DDL8	3.3e-114	99.53	Transposon Tf2-6 polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7U0Q5	1.3e-113	99.06	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold90...	[more]
A0A5A7SPQ8	3.6e-92	71.86	Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7T5N7	1.8e-91	69.70	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7SIV7	3.9e-91	69.26	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of Cmc08g0232971 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	6.7e-35	50.38	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..48 e-value: 1.2E-14 score: 56.6
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 51..139 e-value: 1.5E-26 score: 94.3
IPR041577	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	PFAM	PF17919	RT_RNaseH_2	coord: 103..197 e-value: 4.2E-24 score: 84.5
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 1..219
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 1..219
None	No IPR available	CDD	cd09274	RNase_HI_RT_Ty3	coord: 134..231 e-value: 2.28427E-33 score: 115.282
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..231

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0232971.1	Cmc08g0232971.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006488	dolichol-linked oligosaccharide biosynthetic process
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
biological_process	GO:0007034	vacuolar transport
cellular_component	GO:0005768	endosome
cellular_component	GO:0016020	membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity