Cmc08g0232801 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0232801
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr08: 29849153 .. 29849698 (+)
RNA-Seq Expression	Cmc08g0232801
Synteny	Cmc08g0232801

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGACATATCCCCTATGCATCAGTTGTTGGCAGCTTGATGTATGCAATGTTATGTACTATACCTGACATCTGTTATGTGGTGGGGATAGTCAGTGGATATCAATCTAATTCAGGATTAGCTCATTGGACTACCGTTAAAACTATCCTCAAGTATCTTAGGAGAATAAGAGACTACATGCTTGTGCATGGTTCTAAGGATTTGATTCTTATAGGATACATAGACTCTGATTTTCAGACTGATAGAGATTCTAGGAAATTTACTCCAAGTTCAGTGTTCACTCTTAAAGAAGGAGCTGTAGTTTGGAGAAGTATCAAGCAAGGATGTATTGCTGACTCCACCATGGAGGCAGAGAATGTCGTAGCTTGTGAAGCTGCCAAAGAGTCTATTTGGCATAGGAAATTCTTGACTGGTTTGGAAGTAGTTCCAAACATGTCAAAGCCAATTACTCTTTACTTTGATAATAGTGGGGTTGTGGCTAATTCTAGGAAGCCTAGAAGCCACAAGCGTGGAAAGTATATTGAACGCAAGTATCACTTGATTTAA

mRNA sequence

ATGAGACATATCCCCTATGCATCAGTTGTTGGCAGCTTGATGTATGCAATGTTATGTACTATACCTGACATCTGTTATGTGGTGGGGATAGTCAGTGGATATCAATCTAATTCAGGATTAGCTCATTGGACTACCGTTAAAACTATCCTCAAGTATCTTAGGAGAATAAGAGACTACATGCTTGTGCATGGTTCTAAGGATTTGATTCTTATAGGATACATAGACTCTGATTTTCAGACTGATAGAGATTCTAGGAAATTTACTCCAAGTTCAGTGTTCACTCTTAAAGAAGGAGCTGTAGTTTGGAGAAGTATCAAGCAAGGATGTATTGCTGACTCCACCATGGAGGCAGAGAATGTCGTAGCTTGTGAAGCTGCCAAAGAGTCTATTTGGCATAGGAAATTCTTGACTGGTTTGGAAGTAGTTCCAAACATGTCAAAGCCAATTACTCTTTACTTTGATAATAGTGGGGTTGTGGCTAATTCTAGGAAGCCTAGAAGCCACAAGCGTGGAAAGTATATTGAACGCAAGTATCACTTGATTTAA

Coding sequence (CDS)

ATGAGACATATCCCCTATGCATCAGTTGTTGGCAGCTTGATGTATGCAATGTTATGTACTATACCTGACATCTGTTATGTGGTGGGGATAGTCAGTGGATATCAATCTAATTCAGGATTAGCTCATTGGACTACCGTTAAAACTATCCTCAAGTATCTTAGGAGAATAAGAGACTACATGCTTGTGCATGGTTCTAAGGATTTGATTCTTATAGGATACATAGACTCTGATTTTCAGACTGATAGAGATTCTAGGAAATTTACTCCAAGTTCAGTGTTCACTCTTAAAGAAGGAGCTGTAGTTTGGAGAAGTATCAAGCAAGGATGTATTGCTGACTCCACCATGGAGGCAGAGAATGTCGTAGCTTGTGAAGCTGCCAAAGAGTCTATTTGGCATAGGAAATTCTTGACTGGTTTGGAAGTAGTTCCAAACATGTCAAAGCCAATTACTCTTTACTTTGATAATAGTGGGGTTGTGGCTAATTCTAGGAAGCCTAGAAGCCACAAGCGTGGAAAGTATATTGAACGCAAGTATCACTTGATTTAA

Protein sequence

MRHIPYASVVGSLMYAMLCTIPDICYVVGIVSGYQSNSGLAHWTTVKTILKYLRRIRDYMLVHGSKDLILIGYIDSDFQTDRDSRKFTPSSVFTLKEGAVVWRSIKQGCIADSTMEAENVVACEAAKESIWHRKFLTGLEVVPNMSKPITLYFDNSGVVANSRKPRSHKRGKYIERKYHLI

Homology

[Close]

BLAST of Cmc08g0232801 vs. NCBI nr
Match: KAA0067896.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 362.5 bits (929), Expect = 2.2e-96
Identity = 178/181 (98.34%), Postives = 178/181 (98.34%), Query Frame = 0


Query: 1   MRHIPYASVVGSLMYAMLCTIPDICYVVGIVSGYQSNSGLAHWTTVKTILKYLRRIRDYM 60
           MRHIPYASVVGSLMYAMLCTIPDICYVVGIVSGYQSNSGLAHWT VKTILKYLRRIRDYM
Sbjct: 69  MRHIPYASVVGSLMYAMLCTIPDICYVVGIVSGYQSNSGLAHWTAVKTILKYLRRIRDYM 128

Query: 61  LVHGSKDLILIGYIDSDFQTDRDSRKFTPSSVFTLKEGAVVWRSIKQGCIADSTMEAENV 120
           LVHGSKDLILIGYIDSDFQTDRDSRKFT SSVFTLKEGAVVWRSIKQGCIADSTMEAENV
Sbjct: 129 LVHGSKDLILIGYIDSDFQTDRDSRKFTSSSVFTLKEGAVVWRSIKQGCIADSTMEAENV 188

Query: 121 VACEAAKESIWHRKFLTGLEVVPNMSKPITLYFDNSGVVANSRKPRSHKRGKYIERKYHL 180
           VACEAAKESIW RKFLTGLEVVPNMSKPITLYFDNSGVVANSRKPRSHKRGKYIERKYHL
Sbjct: 189 VACEAAKESIWQRKFLTGLEVVPNMSKPITLYFDNSGVVANSRKPRSHKRGKYIERKYHL 248

Query: 181 I 182
           I
Sbjct: 249 I 249

[Close]

BLAST of Cmc08g0232801 vs. NCBI nr
Match: TYK04317.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 356.3 bits (913), Expect = 1.6e-94
Identity = 174/181 (96.13%), Postives = 175/181 (96.69%), Query Frame = 0


Query: 1   MRHIPYASVVGSLMYAMLCTIPDICYVVGIVSGYQSNSGLAHWTTVKTILKYLRRIRDYM 60
           MRHIPYASVVGSLMYAMLCTIPDICYVVGIVSGYQSNSGLAHW  VKTILKYLRRIRDYM
Sbjct: 69  MRHIPYASVVGSLMYAMLCTIPDICYVVGIVSGYQSNSGLAHWIAVKTILKYLRRIRDYM 128

Query: 61  LVHGSKDLILIGYIDSDFQTDRDSRKFTPSSVFTLKEGAVVWRSIKQGCIADSTMEAENV 120
           LVHGSKDLILIGYIDSDFQTDRDSRK T SSVFTL EGAVVWRSIKQGCIADSTMEAENV
Sbjct: 129 LVHGSKDLILIGYIDSDFQTDRDSRKSTSSSVFTLNEGAVVWRSIKQGCIADSTMEAENV 188

Query: 121 VACEAAKESIWHRKFLTGLEVVPNMSKPITLYFDNSGVVANSRKPRSHKRGKYIERKYHL 180
           VACEA KESIWHRKFLTGLEV+PNMSKPITLYFDNSGVVANSRKPRSHKRGKYIERKYHL
Sbjct: 189 VACEAVKESIWHRKFLTGLEVIPNMSKPITLYFDNSGVVANSRKPRSHKRGKYIERKYHL 248

Query: 181 I 182
           I
Sbjct: 249 I 249

[Close]

BLAST of Cmc08g0232801 vs. NCBI nr
Match: KAA0061339.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 313.5 bits (802), Expect = 1.2e-81
Identity = 154/181 (85.08%), Postives = 160/181 (88.40%), Query Frame = 0


Query: 1   MRHIPYASVVGSLMYAMLCTIPDICYVVGIVSGYQSNSGLAHWTTVKTILKYLRRIRDYM 60
           MRHIPYAS VGSLMYAMLCT PDICY VGIVS YQSN GLAHWT VKTILKYLRR+RDY 
Sbjct: 740 MRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTILKYLRRMRDYT 799

Query: 61  LVHGSKDLILIGYIDSDFQTDRDSRKFTPSSVFTLKEGAVVWRSIKQGCIADSTMEAENV 120
           LV+GSKDLIL GY DSDFQTDRDSRK TP SVFTL  GAVVWRSIKQGCIADSTMEAE V
Sbjct: 800 LVYGSKDLILTGYTDSDFQTDRDSRKSTPGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 859

Query: 121 VACEAAKESIWHRKFLTGLEVVPNMSKPITLYFDNSGVVANSRKPRSHKRGKYIERKYHL 180
            ACEAAKE++W R FL  LEVVPNMSKPITLY DNSG VANSR+PRSHKRGK+IERKYHL
Sbjct: 860 TACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIERKYHL 919

Query: 181 I 182
           I
Sbjct: 920 I 920

[Close]

BLAST of Cmc08g0232801 vs. NCBI nr
Match: KAA0046416.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 310.5 bits (794), Expect = 9.8e-81
Identity = 153/181 (84.53%), Postives = 158/181 (87.29%), Query Frame = 0


Query: 1   MRHIPYASVVGSLMYAMLCTIPDICYVVGIVSGYQSNSGLAHWTTVKTILKYLRRIRDYM 60
           MRHIPYAS VGSLMYAMLCT PDICY VGIVS YQSN GLAHWT VKTILKYLRR RDYM
Sbjct: 280 MRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYM 339

Query: 61  LVHGSKDLILIGYIDSDFQTDRDSRKFTPSSVFTLKEGAVVWRSIKQGCIADSTMEAENV 120
           LV+GSKDLIL GY DSDFQTDRDSRK T  SVFTL  GAVVWRSIKQGCI DSTMEAE V
Sbjct: 340 LVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIVDSTMEAEYV 399

Query: 121 VACEAAKESIWHRKFLTGLEVVPNMSKPITLYFDNSGVVANSRKPRSHKRGKYIERKYHL 180
            ACEAAKE++W R FL  LEVVPNMSKPITLY DNSG VANSR+PRSHKRGK+IERKYHL
Sbjct: 400 AACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIERKYHL 459

Query: 181 I 182
           I
Sbjct: 460 I 460

[Close]

BLAST of Cmc08g0232801 vs. NCBI nr
Match: KAA0040278.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 310.5 bits (794), Expect = 9.8e-81
Identity = 154/181 (85.08%), Postives = 161/181 (88.95%), Query Frame = 0


Query: 1   MRHIPYASVVGSLMYAMLCTIPDICYVVGIVSGYQSNSGLAHWTTVKTILKYLRRIRDYM 60
           MRHIPYAS VGSLMYAMLCT PDICY V IVS YQS  GLA+WT VKTILKYLRR RDYM
Sbjct: 72  MRHIPYASAVGSLMYAMLCTRPDICYGVEIVSRYQSIPGLAYWTIVKTILKYLRRTRDYM 131

Query: 61  LVHGSKDLILIGYIDSDFQTDRDSRKFTPSSVFTLKEGAVVWRSIKQGCIADSTMEAENV 120
           LV+GSKDLILIGYIDS FQTDRDSRK T  SVFTL  GAVVWRSIKQGCIADSTMEAE V
Sbjct: 132 LVYGSKDLILIGYIDSGFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 191

Query: 121 VACEAAKESIWHRKFLTGLEVVPNMSKPITLYFDNSGVVANSRKPRSHKRGKYIERKYHL 180
            ACEAAKE++WHRKFL  LEVVPNMSKPITLY+DNSGVVANSR+PRSH RGK+IERKYHL
Sbjct: 192 AACEAAKEAVWHRKFLIDLEVVPNMSKPITLYYDNSGVVANSREPRSHNRGKHIERKYHL 251

Query: 181 I 182
           I
Sbjct: 252 I 252

[Close]

BLAST of Cmc08g0232801 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 8.5e-35
Identity = 79/181 (43.65%), Postives = 104/181 (57.46%), Query Frame = 0


Query: 1    MRHIPYASVVGSLMYAMLCTIPDICYVVGIVSGYQSNSGLAHWTTVKTILKYLRRIRDYM 60
            M  +PY+S VGSLMYAM+CT PDI + VG+VS +  N G  HW  VK IL+YLR      
Sbjct: 1106 MAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDC 1165

Query: 61   LVHGSKDLILIGYIDSDFQTDRDSRKFTPSSVFTLKEGAVVWRSIKQGCIADSTMEAENV 120
            L  G  D IL GY D+D   D D+RK +   +FT   GA+ W+S  Q C+A ST EAE +
Sbjct: 1166 LCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYI 1225

Query: 121  VACEAAKESIWHRKFLTGLEVVPNMSKPITLYFDNSGVVANSRKPRSHKRGKYIERKYHL 180
             A E  KE IW ++FL  L +     K   +Y D+   +  S+    H R K+I+ +YH 
Sbjct: 1226 AATETGKEMIWLKRFLQELGL---HQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHW 1283

Query: 181  I 182
            I
Sbjct: 1286 I 1283

[Close]

BLAST of Cmc08g0232801 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 117.9 bits (294), Expect = 1.2e-25
Identity = 64/180 (35.56%), Postives = 100/180 (55.56%), Query Frame = 0


Query: 5    PYASVVGSLMYAMLCTIPDICYVVGIVSGYQSNSGLAHWTTVKTILKYLRRIRDYMLVHG 64
            P  S++G LMY MLCT PD+   V I+S Y S +    W  +K +L+YL+   D  L+  
Sbjct: 1180 PCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIF- 1239

Query: 65   SKDLI----LIGYIDSDFQTDRDSRKFTPSSVFTLKE-GAVVWRSIKQGCIADSTMEAEN 124
             K+L     +IGY+DSD+      RK T   +F + +   + W + +Q  +A S+ EAE 
Sbjct: 1240 KKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEY 1299

Query: 125  VVACEAAKESIWHRKFLTGLEVVPNMSKPITLYFDNSGVVANSRKPRSHKRGKYIERKYH 180
            +   EA +E++W +  LT + +   +  PI +Y DN G ++ +  P  HKR K+I+ KYH
Sbjct: 1300 MALFEAVREALWLKFLLTSINI--KLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYH 1356

[Close]

BLAST of Cmc08g0232801 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.0e-19
Identity = 50/132 (37.88%), Postives = 78/132 (59.09%), Query Frame = 0


Query: 1   MRHIPYASVVGSLMYAMLCTIPDICYVVGIVSGYQSNSGLAHWTTVKTILKYLRRIRDYM 60
           M+++PY S VG++MY M+ T PD+   VG++S + S+    HW  +K +L+YL+  + Y 
Sbjct: 1   MKNVPYLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYG 60

Query: 61  LVHGSKDLI-LIGYIDSDFQTDRDSRKFTPSSVFTLKEGAVVWRSIKQGCIADSTMEAEN 120
           L         L+GY D+D+  D +SR+ T   +F L  G V WRS KQ  +A S+ E E 
Sbjct: 61  LEFTRAGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEY 120

Query: 121 VVACEAAKESIW 132
           +   EA +E++W
Sbjct: 121 MALSEATQEAVW 132

[Close]

BLAST of Cmc08g0232801 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 52.8 bits (125), Expect = 4.8e-06
Identity = 39/126 (30.95%), Postives = 54/126 (42.86%), Query Frame = 0


Query: 5   PYASVVGSLMYAMLCTIPDICYVVGIVSGYQSNSGLAHWTTVKTILKYLRRIRDYMLVHG 64
           PY S+VG L++      PDI Y V ++S +       H  + + +L+YL   R   L + 
Sbjct: 182 PYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCLKYR 241

Query: 65  S-KDLILIGYIDSDFQTDRDSRKFTPSSVFTLKEGAVVWRSIK-QGCIADSTMEAENVVA 124
           S   L L  Y D+      D    T   V  L    V W S K +G I   + EAE + A
Sbjct: 242 SGSQLALTVYCDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVPSTEAEYITA 301

Query: 125 CEAAKE 129
            E   E
Sbjct: 302 SETVME 307

[Close]

BLAST of Cmc08g0232801 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.8e-05
Identity = 36/127 (28.35%), Postives = 59/127 (46.46%), Query Frame = 0


Query: 6   YASVVGSLMYAMLCTIPDICYVVGIVSGYQSNSGLAHWTTVKTILKYLR-RIRDYMLVHG 65
           + S+VG+L Y  L T PDI Y V IV        LA +  +K +L+Y++  I   + +H 
Sbjct: 100 FRSIVGALQYLTL-TRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHK 159

Query: 66  SKDLILIGYIDSDFQTDRDSRKFTPSSVFTLKEGAVVWRSIKQGCIADSTMEAENVVACE 125
           +  L +  + DSD+     +R+ T      L    + W + +Q  ++ S+ E E      
Sbjct: 160 NSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALAL 219

Query: 126 AAKESIW 132
            A E  W
Sbjct: 220 TAAELTW 225

[Close]

BLAST of Cmc08g0232801 vs. ExPASy TrEMBL
Match: A0A5A7VMV4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G00550 PE=4 SV=1)

HSP 1 Score: 362.5 bits (929), Expect = 1.1e-96
Identity = 178/181 (98.34%), Postives = 178/181 (98.34%), Query Frame = 0


Query: 1   MRHIPYASVVGSLMYAMLCTIPDICYVVGIVSGYQSNSGLAHWTTVKTILKYLRRIRDYM 60
           MRHIPYASVVGSLMYAMLCTIPDICYVVGIVSGYQSNSGLAHWT VKTILKYLRRIRDYM
Sbjct: 69  MRHIPYASVVGSLMYAMLCTIPDICYVVGIVSGYQSNSGLAHWTAVKTILKYLRRIRDYM 128

Query: 61  LVHGSKDLILIGYIDSDFQTDRDSRKFTPSSVFTLKEGAVVWRSIKQGCIADSTMEAENV 120
           LVHGSKDLILIGYIDSDFQTDRDSRKFT SSVFTLKEGAVVWRSIKQGCIADSTMEAENV
Sbjct: 129 LVHGSKDLILIGYIDSDFQTDRDSRKFTSSSVFTLKEGAVVWRSIKQGCIADSTMEAENV 188

Query: 121 VACEAAKESIWHRKFLTGLEVVPNMSKPITLYFDNSGVVANSRKPRSHKRGKYIERKYHL 180
           VACEAAKESIW RKFLTGLEVVPNMSKPITLYFDNSGVVANSRKPRSHKRGKYIERKYHL
Sbjct: 189 VACEAAKESIWQRKFLTGLEVVPNMSKPITLYFDNSGVVANSRKPRSHKRGKYIERKYHL 248

Query: 181 I 182
           I
Sbjct: 249 I 249

[Close]

BLAST of Cmc08g0232801 vs. ExPASy TrEMBL
Match: A0A5D3BXR5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold527G00490 PE=4 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 7.6e-95
Identity = 174/181 (96.13%), Postives = 175/181 (96.69%), Query Frame = 0


Query: 1   MRHIPYASVVGSLMYAMLCTIPDICYVVGIVSGYQSNSGLAHWTTVKTILKYLRRIRDYM 60
           MRHIPYASVVGSLMYAMLCTIPDICYVVGIVSGYQSNSGLAHW  VKTILKYLRRIRDYM
Sbjct: 69  MRHIPYASVVGSLMYAMLCTIPDICYVVGIVSGYQSNSGLAHWIAVKTILKYLRRIRDYM 128

Query: 61  LVHGSKDLILIGYIDSDFQTDRDSRKFTPSSVFTLKEGAVVWRSIKQGCIADSTMEAENV 120
           LVHGSKDLILIGYIDSDFQTDRDSRK T SSVFTL EGAVVWRSIKQGCIADSTMEAENV
Sbjct: 129 LVHGSKDLILIGYIDSDFQTDRDSRKSTSSSVFTLNEGAVVWRSIKQGCIADSTMEAENV 188

Query: 121 VACEAAKESIWHRKFLTGLEVVPNMSKPITLYFDNSGVVANSRKPRSHKRGKYIERKYHL 180
           VACEA KESIWHRKFLTGLEV+PNMSKPITLYFDNSGVVANSRKPRSHKRGKYIERKYHL
Sbjct: 189 VACEAVKESIWHRKFLTGLEVIPNMSKPITLYFDNSGVVANSRKPRSHKRGKYIERKYHL 248

Query: 181 I 182
           I
Sbjct: 249 I 249

[Close]

BLAST of Cmc08g0232801 vs. ExPASy TrEMBL
Match: A0A5A7V6N0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold749G00160 PE=4 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 5.6e-82
Identity = 154/181 (85.08%), Postives = 160/181 (88.40%), Query Frame = 0


Query: 1   MRHIPYASVVGSLMYAMLCTIPDICYVVGIVSGYQSNSGLAHWTTVKTILKYLRRIRDYM 60
           MRHIPYAS VGSLMYAMLCT PDICY VGIVS YQSN GLAHWT VKTILKYLRR+RDY 
Sbjct: 740 MRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTILKYLRRMRDYT 799

Query: 61  LVHGSKDLILIGYIDSDFQTDRDSRKFTPSSVFTLKEGAVVWRSIKQGCIADSTMEAENV 120
           LV+GSKDLIL GY DSDFQTDRDSRK TP SVFTL  GAVVWRSIKQGCIADSTMEAE V
Sbjct: 800 LVYGSKDLILTGYTDSDFQTDRDSRKSTPGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 859

Query: 121 VACEAAKESIWHRKFLTGLEVVPNMSKPITLYFDNSGVVANSRKPRSHKRGKYIERKYHL 180
            ACEAAKE++W R FL  LEVVPNMSKPITLY DNSG VANSR+PRSHKRGK+IERKYHL
Sbjct: 860 TACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIERKYHL 919

Query: 181 I 182
           I
Sbjct: 920 I 920

[Close]

BLAST of Cmc08g0232801 vs. ExPASy TrEMBL
Match: A0A5A7TWI0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G001610 PE=4 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 4.8e-81
Identity = 153/181 (84.53%), Postives = 158/181 (87.29%), Query Frame = 0


Query: 1   MRHIPYASVVGSLMYAMLCTIPDICYVVGIVSGYQSNSGLAHWTTVKTILKYLRRIRDYM 60
           MRHIPYAS VGSLMYAMLCT PDICY VGIVS YQSN GLAHWT VKTILKYLRR RDYM
Sbjct: 280 MRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYM 339

Query: 61  LVHGSKDLILIGYIDSDFQTDRDSRKFTPSSVFTLKEGAVVWRSIKQGCIADSTMEAENV 120
           LV+GSKDLIL GY DSDFQTDRDSRK T  SVFTL  GAVVWRSIKQGCI DSTMEAE V
Sbjct: 340 LVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIVDSTMEAEYV 399

Query: 121 VACEAAKESIWHRKFLTGLEVVPNMSKPITLYFDNSGVVANSRKPRSHKRGKYIERKYHL 180
            ACEAAKE++W R FL  LEVVPNMSKPITLY DNSG VANSR+PRSHKRGK+IERKYHL
Sbjct: 400 AACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIERKYHL 459

Query: 181 I 182
           I
Sbjct: 460 I 460

[Close]

BLAST of Cmc08g0232801 vs. ExPASy TrEMBL
Match: A0A5A7TBI8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2379G00070 PE=4 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 4.8e-81
Identity = 154/181 (85.08%), Postives = 161/181 (88.95%), Query Frame = 0


Query: 1   MRHIPYASVVGSLMYAMLCTIPDICYVVGIVSGYQSNSGLAHWTTVKTILKYLRRIRDYM 60
           MRHIPYAS VGSLMYAMLCT PDICY V IVS YQS  GLA+WT VKTILKYLRR RDYM
Sbjct: 72  MRHIPYASAVGSLMYAMLCTRPDICYGVEIVSRYQSIPGLAYWTIVKTILKYLRRTRDYM 131

Query: 61  LVHGSKDLILIGYIDSDFQTDRDSRKFTPSSVFTLKEGAVVWRSIKQGCIADSTMEAENV 120
           LV+GSKDLILIGYIDS FQTDRDSRK T  SVFTL  GAVVWRSIKQGCIADSTMEAE V
Sbjct: 132 LVYGSKDLILIGYIDSGFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 191

Query: 121 VACEAAKESIWHRKFLTGLEVVPNMSKPITLYFDNSGVVANSRKPRSHKRGKYIERKYHL 180
            ACEAAKE++WHRKFL  LEVVPNMSKPITLY+DNSGVVANSR+PRSH RGK+IERKYHL
Sbjct: 192 AACEAAKEAVWHRKFLIDLEVVPNMSKPITLYYDNSGVVANSREPRSHNRGKHIERKYHL 251

Query: 181 I 182
           I
Sbjct: 252 I 252

[Close]

BLAST of Cmc08g0232801 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 50.8 bits (120), Expect = 1.3e-06
Identity = 36/127 (28.35%), Postives = 59/127 (46.46%), Query Frame = 0


Query: 6   YASVVGSLMYAMLCTIPDICYVVGIVSGYQSNSGLAHWTTVKTILKYLR-RIRDYMLVHG 65
           + S+VG+L Y  L T PDI Y V IV        LA +  +K +L+Y++  I   + +H 
Sbjct: 100 FRSIVGALQYLTL-TRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHK 159

Query: 66  SKDLILIGYIDSDFQTDRDSRKFTPSSVFTLKEGAVVWRSIKQGCIADSTMEAENVVACE 125
           +  L +  + DSD+     +R+ T      L    + W + +Q  ++ S+ E E      
Sbjct: 160 NSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALAL 219

Query: 126 AAKESIW 132
            A E  W
Sbjct: 220 TAAELTW 225

The following BLAST results are available for this feature:

BLAST of Cmc08g0232801 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067896.1	2.2e-96	98.34	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK04317.1	1.6e-94	96.13	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0061339.1	1.2e-81	85.08	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0046416.1	9.8e-81	84.53	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0040278.1	9.8e-81	85.08	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc08g0232801 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	8.5e-35	43.65	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.2e-25	35.56	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P0CV72	1.0e-19	37.88	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
P25600	4.8e-06	30.95	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]
P92519	1.8e-05	28.35	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc08g0232801 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VMV4	1.1e-96	98.34	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G0055...	[more]
A0A5D3BXR5	7.6e-95	96.13	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold527G0049...	[more]
A0A5A7V6N0	5.6e-82	85.08	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold749G0016...	[more]
A0A5A7TWI0	4.8e-81	84.53	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G0016...	[more]
A0A5A7TBI8	4.8e-81	85.08	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2379G000...	[more]

BLAST of Cmc08g0232801 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00810.1	1.3e-06	28.35	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 71..181 e-value: 2.93479E-35 score: 118.725

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0232801.1	Cmc08g0232801.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding