Cmc08g0230291 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0230291
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	ATP synthase subunit a
Location	CMiso1.1chr08: 25766291 .. 25766524 (+)
RNA-Seq Expression	Cmc08g0230291
Synteny	Cmc08g0230291

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGGTCATAGTTCAGTAAAGATTTTAAGTGGGTCTGCTTGGACTATGCTATGTATGAATAATCTTCTCTATTTCATAAGAGATCCTGGTCCTTTATTTATTGTTCTTGCATTAACCGGTTTGGAATTAGGTGTAGCTATATCACAAGCTCATCTTTCTACGATCTCAACCTGTATTTACTTGAATGATGCTACAAATCTCCATCAAAAATGGTTATTTATTTATAATTGA

mRNA sequence

ATGGCCGGTCATAGTTCAGTAAAGATTTTAAGTGGGTCTGCTTGGACTATGCTATGTATGAATAATCTTCTCTATTTCATAAGAGATCCTGGTCCTTTATTTATTGTTCTTGCATTAACCGGTTTGGAATTAGGTGTAGCTATATCACAAGCTCATCTTTCTACGATCTCAACCTGTATTTACTTGAATGATGCTACAAATCTCCATCAAAAATGGTTATTTATTTATAATTGA

Coding sequence (CDS)

ATGGCCGGTCATAGTTCAGTAAAGATTTTAAGTGGGTCTGCTTGGACTATGCTATGTATGAATAATCTTCTCTATTTCATAAGAGATCCTGGTCCTTTATTTATTGTTCTTGCATTAACCGGTTTGGAATTAGGTGTAGCTATATCACAAGCTCATCTTTCTACGATCTCAACCTGTATTTACTTGAATGATGCTACAAATCTCCATCAAAAATGGTTATTTATTTATAATTGA

Protein sequence

MAGHSSVKILSGSAWTMLCMNNLLYFIRDPGPLFIVLALTGLELGVAISQAHLSTISTCIYLNDATNLHQKWLFIYN

Homology

[Close]

BLAST of Cmc08g0230291 vs. NCBI nr
Match: YP_002608361.1 (ATP synthase F0 subunit 6 [Vitis vinifera] >ACS15241.1 ATP synthase F0 subunit 6 [Vitis vinifera] >CAQ77596.1 ATP synthase F0 subunit 6 [Vitis vinifera] >VZL70166.1 atp6 [Vitis riparia x Vitis cinerea])

HSP 1 Score: 140.6 bits (353), Expect = 5.7e-30
Identity = 68/77 (88.31%), Postives = 71/77 (92.21%), Query Frame = 0


Query: 1   MAGHSSVKILSGSAWTMLCMNNLLYFIRDPGPLFIVLALTGLELGVAISQAHLSTISTCI 60
           MAGHSSVKILSG AWTMLCMN+LLYFI DPGP FIVLALTG ELGVAISQAH+STIS CI
Sbjct: 312 MAGHSSVKILSGFAWTMLCMNDLLYFIGDPGPFFIVLALTGPELGVAISQAHVSTISICI 371

Query: 61  YLNDATNLHQKWLFIYN 78
           YLNDATNLHQ+W FIYN
Sbjct: 372 YLNDATNLHQRWFFIYN 388

[Close]

BLAST of Cmc08g0230291 vs. NCBI nr
Match: AEN56130.1 (ATPase subunit 6 [Cucumis melo subsp. melo] >AZP40292.1 ATPase subunit 6 [Cucumis melo var. momordica])

HSP 1 Score: 136.7 bits (343), Expect = 8.3e-29
Identity = 70/76 (92.11%), Postives = 72/76 (94.74%), Query Frame = 0


Query: 1   MAGHSSVKILSGSAWTMLCMNNLLYFIRDPGPLFIVLALTGLELGVAISQAHLSTISTCI 60
           MAGHSSVKILSGSAWTMLCMNNLLYFI DPGPLFIVLALTGLELGVAISQAH+STIS CI
Sbjct: 196 MAGHSSVKILSGSAWTMLCMNNLLYFIGDPGPLFIVLALTGLELGVAISQAHVSTISICI 255

Query: 61  YLNDATNLHQK-WLFI 76
           YLNDATNLHQ  +LFI
Sbjct: 256 YLNDATNLHQNGYLFI 271

[Close]

BLAST of Cmc08g0230291 vs. NCBI nr
Match: QTT60947.1 (ATP synthase subunit 6 [Osmanthus fragrans])

HSP 1 Score: 134.8 bits (338), Expect = 3.1e-28
Identity = 69/76 (90.79%), Postives = 72/76 (94.74%), Query Frame = 0


Query: 1   MAGHSSVKILSGSAWTMLCMNNLLYFIRDPGPLFIVLALTGLELGVAISQAHLSTISTCI 60
           MAGHSSVKILSGSAWTMLCMN+LLYFI DPGPLFIVLALTGLELGVAISQAH+STIS CI
Sbjct: 357 MAGHSSVKILSGSAWTMLCMNDLLYFIGDPGPLFIVLALTGLELGVAISQAHVSTISICI 416

Query: 61  YLNDATNLHQK-WLFI 76
           YLNDATNLHQ  +LFI
Sbjct: 417 YLNDATNLHQSAYLFI 432

[Close]

BLAST of Cmc08g0230291 vs. NCBI nr
Match: AUB30701.1 (ATPase subunit 6, partial [Forestiera isabelae])

HSP 1 Score: 134.8 bits (338), Expect = 3.1e-28
Identity = 69/76 (90.79%), Postives = 72/76 (94.74%), Query Frame = 0


Query: 1   MAGHSSVKILSGSAWTMLCMNNLLYFIRDPGPLFIVLALTGLELGVAISQAHLSTISTCI 60
           MAGHSSVKILSGSAWTMLCMN+LLYFI DPGPLFIVLALTGLELGVAISQAH+STIS CI
Sbjct: 189 MAGHSSVKILSGSAWTMLCMNDLLYFIGDPGPLFIVLALTGLELGVAISQAHVSTISICI 248

Query: 61  YLNDATNLHQK-WLFI 76
           YLNDATNLHQ  +LFI
Sbjct: 249 YLNDATNLHQSAYLFI 264

[Close]

BLAST of Cmc08g0230291 vs. NCBI nr
Match: AUB30412.1 (ATPase subunit 6, partial [Chionanthus rupicola] >AUB30419.1 ATPase subunit 6, partial [Olea europaea subsp. cuspidata] >AUB30488.1 ATPase subunit 6, partial [Olea europaea subsp. europaea] >AUB30610.1 ATPase subunit 6, partial [Olea europaea subsp. guanchica] >AUB30663.1 ATPase subunit 6, partial [Olea europaea subsp. laperrinei] >AUB30699.1 ATPase subunit 6, partial [Chionanthus parkinsonii] >AUB30704.1 ATPase subunit 6, partial [Nestegis apetala])

HSP 1 Score: 134.8 bits (338), Expect = 3.1e-28
Identity = 69/76 (90.79%), Postives = 72/76 (94.74%), Query Frame = 0


Query: 1   MAGHSSVKILSGSAWTMLCMNNLLYFIRDPGPLFIVLALTGLELGVAISQAHLSTISTCI 60
           MAGHSSVKILSGSAWTMLCMN+LLYFI DPGPLFIVLALTGLELGVAISQAH+STIS CI
Sbjct: 189 MAGHSSVKILSGSAWTMLCMNDLLYFIGDPGPLFIVLALTGLELGVAISQAHVSTISICI 248

Query: 61  YLNDATNLHQK-WLFI 76
           YLNDATNLHQ  +LFI
Sbjct: 249 YLNDATNLHQSAYLFI 264

[Close]

BLAST of Cmc08g0230291 vs. ExPASy Swiss-Prot
Match: Q04654 (ATP synthase subunit a OS=Vicia faba OX=3906 GN=ATP6 PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.1e-28
Identity = 67/78 (85.90%), Postives = 69/78 (88.46%), Query Frame = 0


Query: 1   MAGHSSVKILSGSAWTMLCMNNLLYFIRDPGPLFIVLALTGLELGVAISQAHLSTISTCI 60
           MAGHS VKILSG AWTMLCMN+LLYFI D GPLFIVLALTG ELGVAISQAH+STIS CI
Sbjct: 214 MAGHSLVKILSGFAWTMLCMNDLLYFIGDLGPLFIVLALTGPELGVAISQAHVSTISICI 273

Query: 61  YLNDATNLHQK-WLFIYN 78
           YLNDATNLHQ   LFIYN
Sbjct: 274 YLNDATNLHQTCLLFIYN 291

[Close]

BLAST of Cmc08g0230291 vs. ExPASy Swiss-Prot
Match: P05499 (ATP synthase subunit a OS=Nicotiana tabacum OX=4097 GN=ATP6 PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.2e-27
Identity = 63/74 (85.14%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 1   MAGHSSVKILSGSAWTMLCMNNLLYFIRDPGPLFIVLALTGLELGVAISQAHLSTISTCI 60
           MAGHSSVKILSG AWTMLCMN+LLYFI D GPLFIVLALTGLELGVAISQAH+STI  CI
Sbjct: 314 MAGHSSVKILSGFAWTMLCMNDLLYFIGDLGPLFIVLALTGLELGVAISQAHVSTILICI 373

Query: 61  YLNDATNLHQKWLF 75
           YLNDA NLHQ   F
Sbjct: 374 YLNDAINLHQSASF 387

[Close]

BLAST of Cmc08g0230291 vs. ExPASy Swiss-Prot
Match: P07925 (ATP synthase subunit a OS=Zea mays OX=4577 GN=ATP6 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 4.7e-27
Identity = 61/74 (82.43%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 1   MAGHSSVKILSGSAWTMLCMNNLLYFIRDPGPLFIVLALTGLELGVAISQAHLSTISTCI 60
           MAGHSSVKILSG AWTML +NN+ YF+ D GPLFIVLALTGLELGVAISQAH+STIS CI
Sbjct: 208 MAGHSSVKILSGFAWTMLFLNNIFYFLGDLGPLFIVLALTGLELGVAISQAHVSTISICI 267

Query: 61  YLNDATNLHQKWLF 75
           YLNDATNLHQ   F
Sbjct: 268 YLNDATNLHQNESF 281

[Close]

BLAST of Cmc08g0230291 vs. ExPASy Swiss-Prot
Match: P68526 (ATP synthase subunit a OS=Triticum timopheevii OX=4570 GN=ATP6 PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.4e-26
Identity = 61/74 (82.43%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 1   MAGHSSVKILSGSAWTMLCMNNLLYFIRDPGPLFIVLALTGLELGVAISQAHLSTISTCI 60
           MAGHS VKILSG AWTML +NN+ YFI D GPLFIVLALTGLELGVAISQAH+STIS CI
Sbjct: 311 MAGHSLVKILSGFAWTMLFLNNIFYFIGDLGPLFIVLALTGLELGVAISQAHVSTISICI 370

Query: 61  YLNDATNLHQKWLF 75
           YLNDATNLHQ   F
Sbjct: 371 YLNDATNLHQNESF 384

[Close]

BLAST of Cmc08g0230291 vs. ExPASy Swiss-Prot
Match: P68527 (ATP synthase subunit a OS=Triticum aestivum OX=4565 GN=ATP6 PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.4e-26
Identity = 61/74 (82.43%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 1   MAGHSSVKILSGSAWTMLCMNNLLYFIRDPGPLFIVLALTGLELGVAISQAHLSTISTCI 60
           MAGHS VKILSG AWTML +NN+ YFI D GPLFIVLALTGLELGVAISQAH+STIS CI
Sbjct: 311 MAGHSLVKILSGFAWTMLFLNNIFYFIGDLGPLFIVLALTGLELGVAISQAHVSTISICI 370

Query: 61  YLNDATNLHQKWLF 75
           YLNDATNLHQ   F
Sbjct: 371 YLNDATNLHQNESF 384

[Close]

BLAST of Cmc08g0230291 vs. ExPASy TrEMBL
Match: B6VJU9 (ATP synthase subunit a OS=Vitis vinifera OX=29760 GN=atp6 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.8e-30
Identity = 68/77 (88.31%), Postives = 71/77 (92.21%), Query Frame = 0


Query: 1   MAGHSSVKILSGSAWTMLCMNNLLYFIRDPGPLFIVLALTGLELGVAISQAHLSTISTCI 60
           MAGHSSVKILSG AWTMLCMN+LLYFI DPGP FIVLALTG ELGVAISQAH+STIS CI
Sbjct: 312 MAGHSSVKILSGFAWTMLCMNDLLYFIGDPGPFFIVLALTGPELGVAISQAHVSTISICI 371

Query: 61  YLNDATNLHQKWLFIYN 78
           YLNDATNLHQ+W FIYN
Sbjct: 372 YLNDATNLHQRWFFIYN 388

[Close]

BLAST of Cmc08g0230291 vs. ExPASy TrEMBL
Match: A0A654ICN5 (ATP synthase subunit a OS=Vitis riparia x Vitis cinerea OX=2018007 GN=atp6 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.8e-30
Identity = 68/77 (88.31%), Postives = 71/77 (92.21%), Query Frame = 0


Query: 1   MAGHSSVKILSGSAWTMLCMNNLLYFIRDPGPLFIVLALTGLELGVAISQAHLSTISTCI 60
           MAGHSSVKILSG AWTMLCMN+LLYFI DPGP FIVLALTG ELGVAISQAH+STIS CI
Sbjct: 312 MAGHSSVKILSGFAWTMLCMNDLLYFIGDPGPFFIVLALTGPELGVAISQAHVSTISICI 371

Query: 61  YLNDATNLHQKWLFIYN 78
           YLNDATNLHQ+W FIYN
Sbjct: 372 YLNDATNLHQRWFFIYN 388

[Close]

BLAST of Cmc08g0230291 vs. ExPASy TrEMBL
Match: G3EU41 (ATP synthase subunit a OS=Cucumis melo subsp. melo OX=412675 GN=atp6 PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 4.0e-29
Identity = 70/76 (92.11%), Postives = 72/76 (94.74%), Query Frame = 0


Query: 1   MAGHSSVKILSGSAWTMLCMNNLLYFIRDPGPLFIVLALTGLELGVAISQAHLSTISTCI 60
           MAGHSSVKILSGSAWTMLCMNNLLYFI DPGPLFIVLALTGLELGVAISQAH+STIS CI
Sbjct: 196 MAGHSSVKILSGSAWTMLCMNNLLYFIGDPGPLFIVLALTGLELGVAISQAHVSTISICI 255

Query: 61  YLNDATNLHQK-WLFI 76
           YLNDATNLHQ  +LFI
Sbjct: 256 YLNDATNLHQNGYLFI 271

[Close]

BLAST of Cmc08g0230291 vs. ExPASy TrEMBL
Match: A0A3S5HPI7 (ATP synthase subunit a OS=Cucumis melo var. momordica OX=2034244 GN=atp6 PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 4.0e-29
Identity = 70/76 (92.11%), Postives = 72/76 (94.74%), Query Frame = 0


Query: 1   MAGHSSVKILSGSAWTMLCMNNLLYFIRDPGPLFIVLALTGLELGVAISQAHLSTISTCI 60
           MAGHSSVKILSGSAWTMLCMNNLLYFI DPGPLFIVLALTGLELGVAISQAH+STIS CI
Sbjct: 196 MAGHSSVKILSGSAWTMLCMNNLLYFIGDPGPLFIVLALTGLELGVAISQAHVSTISICI 255

Query: 61  YLNDATNLHQK-WLFI 76
           YLNDATNLHQ  +LFI
Sbjct: 256 YLNDATNLHQNGYLFI 271

[Close]

BLAST of Cmc08g0230291 vs. ExPASy TrEMBL
Match: A0A2H4V4G6 (ATP synthase subunit a (Fragment) OS=Olea europaea subsp. europaea OX=158383 GN=atp6 PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.5e-28
Identity = 69/76 (90.79%), Postives = 72/76 (94.74%), Query Frame = 0


Query: 1   MAGHSSVKILSGSAWTMLCMNNLLYFIRDPGPLFIVLALTGLELGVAISQAHLSTISTCI 60
           MAGHSSVKILSGSAWTMLCMN+LLYFI DPGPLFIVLALTGLELGVAISQAH+STIS CI
Sbjct: 189 MAGHSSVKILSGSAWTMLCMNDLLYFIGDPGPLFIVLALTGLELGVAISQAHVSTISICI 248

Query: 61  YLNDATNLHQK-WLFI 76
           YLNDATNLHQ  +LFI
Sbjct: 249 YLNDATNLHQSAYLFI 264

[Close]

BLAST of Cmc08g0230291 vs. TAIR 10
Match: AT2G07741.1 (ATPase, F0 complex, subunit A protein )

HSP 1 Score: 105.9 bits (263), Expect = 1.5e-23
Identity = 54/69 (78.26%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 1   MAGHSSVKILSGSAWTMLCMNNLLYFIRDPGPLFIVLALTGLELGVAISQAHLSTISTCI 60
           MAGHS VKILSG AWTMLCMN++ YFI   GPLFIVLALTGLELGVAI QA++ TI  CI
Sbjct: 317 MAGHSLVKILSGFAWTMLCMNDIFYFIGALGPLFIVLALTGLELGVAILQAYVFTILICI 376

Query: 61  YLNDATNLH 70
           YLNDA NLH
Sbjct: 377 YLNDAINLH 385

[Close]

BLAST of Cmc08g0230291 vs. TAIR 10
Match: ATMG01170.1 (ATPase, F0 complex, subunit A protein )

HSP 1 Score: 105.9 bits (263), Expect = 1.5e-23
Identity = 54/69 (78.26%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 1   MAGHSSVKILSGSAWTMLCMNNLLYFIRDPGPLFIVLALTGLELGVAISQAHLSTISTCI 60
           MAGHS VKILSG AWTMLCMN++ YFI   GPLFIVLALTGLELGVAI QA++ TI  CI
Sbjct: 281 MAGHSLVKILSGFAWTMLCMNDIFYFIGALGPLFIVLALTGLELGVAILQAYVFTILICI 340

Query: 61  YLNDATNLH 70
           YLNDA NLH
Sbjct: 341 YLNDAINLH 349

[Close]

BLAST of Cmc08g0230291 vs. TAIR 10
Match: ATMG00410.1 (ATPase subunit 6-1 )

HSP 1 Score: 105.9 bits (263), Expect = 1.5e-23
Identity = 54/69 (78.26%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 1   MAGHSSVKILSGSAWTMLCMNNLLYFIRDPGPLFIVLALTGLELGVAISQAHLSTISTCI 60
           MAGHS VKILSG AWTMLCMN++ YFI   GPLFIVLALTGLELGVAI QA++ TI  CI
Sbjct: 317 MAGHSLVKILSGFAWTMLCMNDIFYFIGALGPLFIVLALTGLELGVAILQAYVFTILICI 376

Query: 61  YLNDATNLH 70
           YLNDA NLH
Sbjct: 377 YLNDAINLH 385

The following BLAST results are available for this feature:

BLAST of Cmc08g0230291 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_002608361.1	5.7e-30	88.31	ATP synthase F0 subunit 6 [Vitis vinifera] >ACS15241.1 ATP synthase F0 subunit 6...	[more]
AEN56130.1	8.3e-29	92.11	ATPase subunit 6 [Cucumis melo subsp. melo] >AZP40292.1 ATPase subunit 6 [Cucumi...	[more]
QTT60947.1	3.1e-28	90.79	ATP synthase subunit 6 [Osmanthus fragrans]	[more]
AUB30701.1	3.1e-28	90.79	ATPase subunit 6, partial [Forestiera isabelae]	[more]
AUB30412.1	3.1e-28	90.79	ATPase subunit 6, partial [Chionanthus rupicola] >AUB30419.1 ATPase subunit 6, p...	[more]

BLAST of Cmc08g0230291 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q04654	1.1e-28	85.90	ATP synthase subunit a OS=Vicia faba OX=3906 GN=ATP6 PE=3 SV=1	[more]
P05499	1.2e-27	85.14	ATP synthase subunit a OS=Nicotiana tabacum OX=4097 GN=ATP6 PE=3 SV=1	[more]
P07925	4.7e-27	82.43	ATP synthase subunit a OS=Zea mays OX=4577 GN=ATP6 PE=3 SV=1	[more]
P68526	1.4e-26	82.43	ATP synthase subunit a OS=Triticum timopheevii OX=4570 GN=ATP6 PE=3 SV=1	[more]
P68527	1.4e-26	82.43	ATP synthase subunit a OS=Triticum aestivum OX=4565 GN=ATP6 PE=3 SV=1	[more]

BLAST of Cmc08g0230291 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
B6VJU9	2.8e-30	88.31	ATP synthase subunit a OS=Vitis vinifera OX=29760 GN=atp6 PE=3 SV=1	[more]
A0A654ICN5	2.8e-30	88.31	ATP synthase subunit a OS=Vitis riparia x Vitis cinerea OX=2018007 GN=atp6 PE=3 ...	[more]
G3EU41	4.0e-29	92.11	ATP synthase subunit a OS=Cucumis melo subsp. melo OX=412675 GN=atp6 PE=3 SV=1	[more]
A0A3S5HPI7	4.0e-29	92.11	ATP synthase subunit a OS=Cucumis melo var. momordica OX=2034244 GN=atp6 PE=3 SV...	[more]
A0A2H4V4G6	1.5e-28	90.79	ATP synthase subunit a (Fragment) OS=Olea europaea subsp. europaea OX=158383 GN=...	[more]

BLAST of Cmc08g0230291 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G07741.1	1.5e-23	78.26	ATPase, F0 complex, subunit A protein	[more]
ATMG01170.1	1.5e-23	78.26	ATPase, F0 complex, subunit A protein	[more]
ATMG00410.1	1.5e-23	78.26	ATPase subunit 6-1	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR045083	ATP synthase, F0 complex, subunit A, bacterial/mitochondria	PANTHER	PTHR11410	ATP SYNTHASE SUBUNIT A	coord: 1..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0230291.1	Cmc08g0230291.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:1902600	proton transmembrane transport
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)
molecular_function	GO:0015078	proton transmembrane transporter activity