Cmc08g0229391 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0229391
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr08: 24306479 .. 24306988 (+)
RNA-Seq Expression	Cmc08g0229391
Synteny	Cmc08g0229391

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTAAGTCGATTAGAATACTCTTATCCATCACCACTTTTTATGATTATGAAATTTGGCAGATGGATGTCAAGATAGTTTTTTTAAATGAAAATCTTGAGGAGAGTATCTATATGGCTAAACCAAAGGGATTTATAAAAAAGGGTCAAGAACAAAAAGTTTGTAAGTTTCAGAAATCCATTTATGGTTTGAAGCAAGCTAGATCCTGGAATATAAGATTTGATACTGCGATCAAGTCTTATGGCTTTGAACAAAATGTTGACGAACTTTGTGTTTACAAAAAGGTCGTCAATTCTATTGTAGCGTTCTTAGTATTATATGTAGATGATATTCTACTCATTGGAAATGACGTAGGTTATCTTACTGATATCAAGAAATGGCTAGCTACACAATTTCAAATGAAAGATTTGGGAGATGCACAATACGTTTTTGGAATCCAAGTTGTTCGGAATCGTAAAAATAGAACACTGGTCATATCTCAAGCATCTTATATAAACAAAATCTTGTAG

mRNA sequence

ATGCTTAAGTCGATTAGAATACTCTTATCCATCACCACTTTTTATGATTATGAAATTTGGCAGATGGATGTCAAGATAGTTTTTTTAAATGAAAATCTTGAGGAGAGTATCTATATGGCTAAACCAAAGGGATTTATAAAAAAGGGTCAAGAACAAAAAGTTTGTAAGTTTCAGAAATCCATTTATGGTTTGAAGCAAGCTAGATCCTGGAATATAAGATTTGATACTGCGATCAAGTCTTATGGCTTTGAACAAAATGTTGACGAACTTTGTGTTTACAAAAAGGTCGTCAATTCTATTGTAGCGTTCTTAGTATTATATGTAGATGATATTCTACTCATTGGAAATGACGTAGGTTATCTTACTGATATCAAGAAATGGCTAGCTACACAATTTCAAATGAAAGATTTGGGAGATGCACAATACGTTTTTGGAATCCAAGTTGTTCGGAATCGTAAAAATAGAACACTGGTCATATCTCAAGCATCTTATATAAACAAAATCTTGTAG

Coding sequence (CDS)

ATGCTTAAGTCGATTAGAATACTCTTATCCATCACCACTTTTTATGATTATGAAATTTGGCAGATGGATGTCAAGATAGTTTTTTTAAATGAAAATCTTGAGGAGAGTATCTATATGGCTAAACCAAAGGGATTTATAAAAAAGGGTCAAGAACAAAAAGTTTGTAAGTTTCAGAAATCCATTTATGGTTTGAAGCAAGCTAGATCCTGGAATATAAGATTTGATACTGCGATCAAGTCTTATGGCTTTGAACAAAATGTTGACGAACTTTGTGTTTACAAAAAGGTCGTCAATTCTATTGTAGCGTTCTTAGTATTATATGTAGATGATATTCTACTCATTGGAAATGACGTAGGTTATCTTACTGATATCAAGAAATGGCTAGCTACACAATTTCAAATGAAAGATTTGGGAGATGCACAATACGTTTTTGGAATCCAAGTTGTTCGGAATCGTAAAAATAGAACACTGGTCATATCTCAAGCATCTTATATAAACAAAATCTTGTAG

Protein sequence

MLKSIRILLSITTFYDYEIWQMDVKIVFLNENLEESIYMAKPKGFIKKGQEQKVCKFQKSIYGLKQARSWNIRFDTAIKSYGFEQNVDELCVYKKVVNSIVAFLVLYVDDILLIGNDVGYLTDIKKWLATQFQMKDLGDAQYVFGIQVVRNRKNRTLVISQASYINKIL

Homology

[Close]

BLAST of Cmc08g0229391 vs. NCBI nr
Match: TYK09500.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 299.7 bits (766), Expect = 1.6e-77
Identity = 150/170 (88.24%), Postives = 161/170 (94.71%), Query Frame = 0


Query: 1   MLKSIRILLSITTFYDYEIWQMDVKIVFLNENLEESIYMAKPKGFIKKGQEQKVCKFQKS 60
           MLKSIRILLSI TFYDYEIWQ+DVK  FLN NLEESIYMA+P+GFIKKGQEQK+CKFQKS
Sbjct: 1   MLKSIRILLSIATFYDYEIWQIDVKTAFLNGNLEESIYMAQPEGFIKKGQEQKICKFQKS 60

Query: 61  IYGLKQA-RSWNIRFDTAIKSYGFEQNVDELCVYKKVVNSIVAFLVLYVDDILLIGNDVG 120
           IYGLKQA RSWNIRFDTAIKSYGFEQNVD+ CVYKKVVNSIVAFLVLYVDDILL+GNDVG
Sbjct: 61  IYGLKQASRSWNIRFDTAIKSYGFEQNVDKPCVYKKVVNSIVAFLVLYVDDILLVGNDVG 120

Query: 121 YLTDIKKWLATQFQMKDLGDAQYVFGIQVVRNRKNRTLVISQASYINKIL 170
           YLTDIKKWLATQFQMKD GDAQYV GIQ+VRNRKNRTL +S+ASYI+K+L
Sbjct: 121 YLTDIKKWLATQFQMKDFGDAQYVLGIQIVRNRKNRTLAMSRASYIDKML 170

[Close]

BLAST of Cmc08g0229391 vs. NCBI nr
Match: KAA0061927.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 289.3 bits (739), Expect = 2.2e-74
Identity = 147/170 (86.47%), Postives = 157/170 (92.35%), Query Frame = 0


Query: 1   MLKSIRILLSITTFYDYEIWQMDVKIVFLNENLEESIYMAKPKGFIKKGQEQKVCKFQKS 60
           MLKSIRILLSI TFYDYEIWQMDVK  FLN NLE S+YMA+PKGFIK GQEQKVCK QKS
Sbjct: 1   MLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEGSVYMAQPKGFIKNGQEQKVCKLQKS 60

Query: 61  IYGLKQA-RSWNIRFDTAIKSYGFEQNVDELCVYKKVVNSIVAFLVLYVDDILLIGNDVG 120
           IY LKQA RSWNI+FDT IK+YGFEQNV+E CVYKKVVNSIVAFLVLYVDDILLIGNDVG
Sbjct: 61  IYDLKQASRSWNIKFDTVIKTYGFEQNVEEPCVYKKVVNSIVAFLVLYVDDILLIGNDVG 120

Query: 121 YLTDIKKWLATQFQMKDLGDAQYVFGIQVVRNRKNRTLVISQASYINKIL 170
           YLTDI+KWLATQFQMK LGDAQYV GIQ+VRNRKNRTLV+SQASYI+K+L
Sbjct: 121 YLTDIEKWLATQFQMKYLGDAQYVLGIQIVRNRKNRTLVMSQASYIDKML 170

[Close]

BLAST of Cmc08g0229391 vs. NCBI nr
Match: ADJ18449.1 (gag/pol protein, partial [Bryonia dioica])

HSP 1 Score: 285.0 bits (728), Expect = 4.1e-73
Identity = 141/170 (82.94%), Postives = 156/170 (91.76%), Query Frame = 0


Query: 1    MLKSIRILLSITTFYDYEIWQMDVKIVFLNENLEESIYMAKPKGFIKKGQEQKVCKFQKS 60
            MLKSIRILLSI TFY+YEIWQMDVK  FLN NLEESIYM +P+GFI + QEQKVCK QKS
Sbjct: 894  MLKSIRILLSIATFYNYEIWQMDVKTAFLNGNLEESIYMVQPEGFIAQDQEQKVCKLQKS 953

Query: 61   IYGLKQA-RSWNIRFDTAIKSYGFEQNVDELCVYKKVVNSIVAFLVLYVDDILLIGNDVG 120
            IYGLKQA RSWNIRFDTAIKSYGFEQNVDE CVYKK+VNS+VAFL+LYVDDILLIGNDV 
Sbjct: 954  IYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKKIVNSVVAFLILYVDDILLIGNDVE 1013

Query: 121  YLTDIKKWLATQFQMKDLGDAQYVFGIQVVRNRKNRTLVISQASYINKIL 170
            YLTD+KKWL TQFQMKDLG+AQY+ GIQ+VRNRKN+TL +SQASYI+K+L
Sbjct: 1014 YLTDVKKWLNTQFQMKDLGEAQYILGIQIVRNRKNKTLAMSQASYIDKVL 1063

[Close]

BLAST of Cmc08g0229391 vs. NCBI nr
Match: TYK24002.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 284.6 bits (727), Expect = 5.4e-73
Identity = 146/170 (85.88%), Postives = 156/170 (91.76%), Query Frame = 0


Query: 1   MLKSIRILLSITTFYDYEIWQMDVKIVFLNENLEESIYMAKPKGFIKKGQEQKVCKFQKS 60
           MLKSIRILLSI TFYDYEIWQMDVK  FLN NLE S+YMA+PKGFIK GQEQKVCK QKS
Sbjct: 1   MLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEGSVYMAQPKGFIKNGQEQKVCKLQKS 60

Query: 61  IYGLKQA-RSWNIRFDTAIKSYGFEQNVDELCVYKKVVNSIVAFLVLYVDDILLIGNDVG 120
           IY LKQA RSWNI+FDT IK+YGFEQNV+E  VYKKVVNSIVAFLVLYVDDILLIGNDVG
Sbjct: 61  IYDLKQASRSWNIKFDTVIKTYGFEQNVEEPRVYKKVVNSIVAFLVLYVDDILLIGNDVG 120

Query: 121 YLTDIKKWLATQFQMKDLGDAQYVFGIQVVRNRKNRTLVISQASYINKIL 170
           YLTDI+KWLATQFQMK LGDAQYV GIQ+VRNRKNRTLV+SQASYI+K+L
Sbjct: 121 YLTDIEKWLATQFQMKYLGDAQYVLGIQIVRNRKNRTLVMSQASYIDKML 170

[Close]

BLAST of Cmc08g0229391 vs. NCBI nr
Match: KAA0045356.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 278.5 bits (711), Expect = 3.9e-71
Identity = 138/170 (81.18%), Postives = 154/170 (90.59%), Query Frame = 0


Query: 1   MLKSIRILLSITTFYDYEIWQMDVKIVFLNENLEESIYMAKPKGFIKKGQEQKVCKFQKS 60
           M+KSIRILLSI TFYDYEIWQMDVK  FLN NLEESIYM +P+GFI+KGQEQKVCK QKS
Sbjct: 224 MIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMVQPEGFIQKGQEQKVCKLQKS 283

Query: 61  IYGLKQA-RSWNIRFDTAIKSYGFEQNVDELCVYKKVVNSIVAFLVLYVDDILLIGNDVG 120
           IYGLKQA RSWNIRFDT IKSYGFEQNVDE CVYK+++NS VAFLVLYVDDILLIGN+V 
Sbjct: 284 IYGLKQASRSWNIRFDTGIKSYGFEQNVDEPCVYKRIINSTVAFLVLYVDDILLIGNEVD 343

Query: 121 YLTDIKKWLATQFQMKDLGDAQYVFGIQVVRNRKNRTLVISQASYINKIL 170
           +LTDIK+WL TQFQMKDLG AQYV GIQ+V+NRKN+TL +SQ SYI+K+L
Sbjct: 344 HLTDIKEWLDTQFQMKDLGSAQYVLGIQIVQNRKNKTLAMSQTSYIDKML 393

[Close]

BLAST of Cmc08g0229391 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.3e-33
Identity = 75/170 (44.12%), Postives = 111/170 (65.29%), Query Frame = 0


Query: 2    LKSIRILLSITTFYDYEIWQMDVKIVFLNENLEESIYMAKPKGFIKKGQEQKVCKFQKSI 61
            + SIR +LS+    D E+ Q+DVK  FL+ +LEE IYM +P+GF   G++  VCK  KS+
Sbjct: 901  MTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSL 960

Query: 62   YGLKQA-RSWNIRFDTAIKSYGFEQNVDELCVY-KKVVNSIVAFLVLYVDDILLIGNDVG 121
            YGLKQA R W ++FD+ +KS  + +   + CVY K+   +    L+LYVDD+L++G D G
Sbjct: 961  YGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKG 1020

Query: 122  YLTDIKKWLATQFQMKDLGDAQYVFGIQVVRNRKNRTLVISQASYINKIL 170
             +  +K  L+  F MKDLG AQ + G+++VR R +R L +SQ  YI ++L
Sbjct: 1021 LIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVL 1070

[Close]

BLAST of Cmc08g0229391 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 104.0 bits (258), Expect = 1.7e-21
Identity = 61/172 (35.47%), Postives = 101/172 (58.72%), Query Frame = 0


Query: 2    LKSIRILLSITTFYDYEIWQMDVKIVFLNENLEESIYMAKPKGFIKKGQEQKVCKFQKSI 61
            + S R +LS+   Y+ ++ QMDVK  FLN  L+E IYM  P+G         VCK  K+I
Sbjct: 981  ISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGI--SCNSDNVCKLNKAI 1040

Query: 62   YGLKQ-ARSWNIRFDTAIKSYGFEQNVDELCVY---KKVVNSIVAFLVLYVDDILLIGND 121
            YGLKQ AR W   F+ A+K   F  +  + C+Y   K  +N  + +++LYVDD+++   D
Sbjct: 1041 YGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENI-YVLLYVDDVVIATGD 1100

Query: 122  VGYLTDIKKWLATQFQMKDLGDAQYVFGIQVVRNRKNRTLVISQASYINKIL 170
            +  + + K++L  +F+M DL + ++  GI++    +   + +SQ++Y+ KIL
Sbjct: 1101 MTRMNNFKRYLMEKFRMTDLNEIKHFIGIRI--EMQEDKIYLSQSAYVKKIL 1147

[Close]

BLAST of Cmc08g0229391 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 9.4e-20
Identity = 58/167 (34.73%), Postives = 92/167 (55.09%), Query Frame = 0


Query: 4    SIRILLSITTFYDYEIWQMDVKIVFLNENLEESIYMAKPKGFIKKGQEQKVCKFQKSIYG 63
            SIRI+L +     + I Q+DV   FL   L + +YM++P GFI K +   VCK +K++YG
Sbjct: 1046 SIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYG 1105

Query: 64   LKQA-RSWNIRFDTAIKSYGFEQNVDELCVYKKVVNSIVAFLVLYVDDILLIGNDVGYLT 123
            LKQA R+W +     + + GF  +V +  ++       + ++++YVDDIL+ GND   L 
Sbjct: 1106 LKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLH 1165

Query: 124  DIKKWLATQFQMKDLGDAQYVFGIQVVRNRKNRTLVISQASYINKIL 170
            +    L+ +F +KD  +  Y  GI+    R    L +SQ  YI  +L
Sbjct: 1166 NTLDNLSQRFSVKDHEELHYFLGIEA--KRVPTGLHLSQRRYILDLL 1210

[Close]

BLAST of Cmc08g0229391 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.6e-19
Identity = 56/167 (33.53%), Postives = 92/167 (55.09%), Query Frame = 0


Query: 4    SIRILLSITTFYDYEIWQMDVKIVFLNENLEESIYMAKPKGFIKKGQEQKVCKFQKSIYG 63
            SIRI+L +     + I Q+DV   FL   L + +YM++P GF+ K +   VC+ +K+IYG
Sbjct: 1029 SIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYG 1088

Query: 64   LKQA-RSWNIRFDTAIKSYGFEQNVDELCVYKKVVNSIVAFLVLYVDDILLIGNDVGYLT 123
            LKQA R+W +   T + + GF  ++ +  ++       + ++++YVDDIL+ GND   L 
Sbjct: 1089 LKQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLK 1148

Query: 124  DIKKWLATQFQMKDLGDAQYVFGIQVVRNRKNRTLVISQASYINKIL 170
                 L+ +F +K+  D  Y  GI+    R  + L +SQ  Y   +L
Sbjct: 1149 HTLDALSQRFSVKEHEDLHYFLGIEA--KRVPQGLHLSQRRYTLDLL 1193

[Close]

BLAST of Cmc08g0229391 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 73.6 bits (179), Expect = 2.5e-12
Identity = 44/147 (29.93%), Postives = 71/147 (48.30%), Query Frame = 0


Query: 22  MDVKIVFLNENLEESIYMAKPKGFIKKGQEQKVCKFQKSIYGLKQA-RSWNIRFDTAIKS 81
           MDV   FLN  ++E IY+ +P GF+ +     V +    +YGLKQA   WN   +  +K 
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 82  YGFEQNVDELCVYKKVVNSIVAFLVLYVDDILLIGNDVGYLTDIKKWLATQFQMKDLGDA 141
            GF ++  E  +Y +  +    ++ +YVDD+L+          +K+ L   + MKDLG  
Sbjct: 61  IGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120

Query: 142 QYVFGIQVVRNRKNRTLVISQASYINK 168
               G+  +    N  + +S   YI K
Sbjct: 121 DKFLGLN-IHQSSNGDITLSLQDYIAK 146

[Close]

BLAST of Cmc08g0229391 vs. ExPASy TrEMBL
Match: A0A5D3CDT9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold499G001020 PE=4 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 7.8e-78
Identity = 150/170 (88.24%), Postives = 161/170 (94.71%), Query Frame = 0


Query: 1   MLKSIRILLSITTFYDYEIWQMDVKIVFLNENLEESIYMAKPKGFIKKGQEQKVCKFQKS 60
           MLKSIRILLSI TFYDYEIWQ+DVK  FLN NLEESIYMA+P+GFIKKGQEQK+CKFQKS
Sbjct: 1   MLKSIRILLSIATFYDYEIWQIDVKTAFLNGNLEESIYMAQPEGFIKKGQEQKICKFQKS 60

Query: 61  IYGLKQA-RSWNIRFDTAIKSYGFEQNVDELCVYKKVVNSIVAFLVLYVDDILLIGNDVG 120
           IYGLKQA RSWNIRFDTAIKSYGFEQNVD+ CVYKKVVNSIVAFLVLYVDDILL+GNDVG
Sbjct: 61  IYGLKQASRSWNIRFDTAIKSYGFEQNVDKPCVYKKVVNSIVAFLVLYVDDILLVGNDVG 120

Query: 121 YLTDIKKWLATQFQMKDLGDAQYVFGIQVVRNRKNRTLVISQASYINKIL 170
           YLTDIKKWLATQFQMKD GDAQYV GIQ+VRNRKNRTL +S+ASYI+K+L
Sbjct: 121 YLTDIKKWLATQFQMKDFGDAQYVLGIQIVRNRKNRTLAMSRASYIDKML 170

[Close]

BLAST of Cmc08g0229391 vs. ExPASy TrEMBL
Match: A0A5A7V4T1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G002110 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 1.1e-74
Identity = 147/170 (86.47%), Postives = 157/170 (92.35%), Query Frame = 0


Query: 1   MLKSIRILLSITTFYDYEIWQMDVKIVFLNENLEESIYMAKPKGFIKKGQEQKVCKFQKS 60
           MLKSIRILLSI TFYDYEIWQMDVK  FLN NLE S+YMA+PKGFIK GQEQKVCK QKS
Sbjct: 1   MLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEGSVYMAQPKGFIKNGQEQKVCKLQKS 60

Query: 61  IYGLKQA-RSWNIRFDTAIKSYGFEQNVDELCVYKKVVNSIVAFLVLYVDDILLIGNDVG 120
           IY LKQA RSWNI+FDT IK+YGFEQNV+E CVYKKVVNSIVAFLVLYVDDILLIGNDVG
Sbjct: 61  IYDLKQASRSWNIKFDTVIKTYGFEQNVEEPCVYKKVVNSIVAFLVLYVDDILLIGNDVG 120

Query: 121 YLTDIKKWLATQFQMKDLGDAQYVFGIQVVRNRKNRTLVISQASYINKIL 170
           YLTDI+KWLATQFQMK LGDAQYV GIQ+VRNRKNRTLV+SQASYI+K+L
Sbjct: 121 YLTDIEKWLATQFQMKYLGDAQYVLGIQIVRNRKNRTLVMSQASYIDKML 170

[Close]

BLAST of Cmc08g0229391 vs. ExPASy TrEMBL
Match: E2GK51 (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 2.0e-73
Identity = 141/170 (82.94%), Postives = 156/170 (91.76%), Query Frame = 0


Query: 1    MLKSIRILLSITTFYDYEIWQMDVKIVFLNENLEESIYMAKPKGFIKKGQEQKVCKFQKS 60
            MLKSIRILLSI TFY+YEIWQMDVK  FLN NLEESIYM +P+GFI + QEQKVCK QKS
Sbjct: 894  MLKSIRILLSIATFYNYEIWQMDVKTAFLNGNLEESIYMVQPEGFIAQDQEQKVCKLQKS 953

Query: 61   IYGLKQA-RSWNIRFDTAIKSYGFEQNVDELCVYKKVVNSIVAFLVLYVDDILLIGNDVG 120
            IYGLKQA RSWNIRFDTAIKSYGFEQNVDE CVYKK+VNS+VAFL+LYVDDILLIGNDV 
Sbjct: 954  IYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKKIVNSVVAFLILYVDDILLIGNDVE 1013

Query: 121  YLTDIKKWLATQFQMKDLGDAQYVFGIQVVRNRKNRTLVISQASYINKIL 170
            YLTD+KKWL TQFQMKDLG+AQY+ GIQ+VRNRKN+TL +SQASYI+K+L
Sbjct: 1014 YLTDVKKWLNTQFQMKDLGEAQYILGIQIVRNRKNKTLAMSQASYIDKVL 1063

[Close]

BLAST of Cmc08g0229391 vs. ExPASy TrEMBL
Match: A0A5D3DKH2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G00740 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 2.6e-73
Identity = 146/170 (85.88%), Postives = 156/170 (91.76%), Query Frame = 0


Query: 1   MLKSIRILLSITTFYDYEIWQMDVKIVFLNENLEESIYMAKPKGFIKKGQEQKVCKFQKS 60
           MLKSIRILLSI TFYDYEIWQMDVK  FLN NLE S+YMA+PKGFIK GQEQKVCK QKS
Sbjct: 1   MLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEGSVYMAQPKGFIKNGQEQKVCKLQKS 60

Query: 61  IYGLKQA-RSWNIRFDTAIKSYGFEQNVDELCVYKKVVNSIVAFLVLYVDDILLIGNDVG 120
           IY LKQA RSWNI+FDT IK+YGFEQNV+E  VYKKVVNSIVAFLVLYVDDILLIGNDVG
Sbjct: 61  IYDLKQASRSWNIKFDTVIKTYGFEQNVEEPRVYKKVVNSIVAFLVLYVDDILLIGNDVG 120

Query: 121 YLTDIKKWLATQFQMKDLGDAQYVFGIQVVRNRKNRTLVISQASYINKIL 170
           YLTDI+KWLATQFQMK LGDAQYV GIQ+VRNRKNRTLV+SQASYI+K+L
Sbjct: 121 YLTDIEKWLATQFQMKYLGDAQYVLGIQIVRNRKNRTLVMSQASYIDKML 170

[Close]

BLAST of Cmc08g0229391 vs. ExPASy TrEMBL
Match: A0A5A7TTA2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G001350 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 1.9e-71
Identity = 138/170 (81.18%), Postives = 154/170 (90.59%), Query Frame = 0


Query: 1   MLKSIRILLSITTFYDYEIWQMDVKIVFLNENLEESIYMAKPKGFIKKGQEQKVCKFQKS 60
           M+KSIRILLSI TFYDYEIWQMDVK  FLN NLEESIYM +P+GFI+KGQEQKVCK QKS
Sbjct: 224 MIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMVQPEGFIQKGQEQKVCKLQKS 283

Query: 61  IYGLKQA-RSWNIRFDTAIKSYGFEQNVDELCVYKKVVNSIVAFLVLYVDDILLIGNDVG 120
           IYGLKQA RSWNIRFDT IKSYGFEQNVDE CVYK+++NS VAFLVLYVDDILLIGN+V 
Sbjct: 284 IYGLKQASRSWNIRFDTGIKSYGFEQNVDEPCVYKRIINSTVAFLVLYVDDILLIGNEVD 343

Query: 121 YLTDIKKWLATQFQMKDLGDAQYVFGIQVVRNRKNRTLVISQASYINKIL 170
           +LTDIK+WL TQFQMKDLG AQYV GIQ+V+NRKN+TL +SQ SYI+K+L
Sbjct: 344 HLTDIKEWLDTQFQMKDLGSAQYVLGIQIVQNRKNKTLAMSQTSYIDKML 393

[Close]

BLAST of Cmc08g0229391 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 102.8 bits (255), Expect = 2.7e-22
Identity = 50/155 (32.26%), Postives = 95/155 (61.29%), Query Frame = 0


Query: 2   LKSIRILLSITTFYDYEIWQMDVKIVFLNENLEESIYMAKPKGFIKKGQE----QKVCKF 61
           L S++++L+I+  Y++ + Q+D+   FLN +L+E IYM  P G+  +  +      VC  
Sbjct: 173 LTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYL 232

Query: 62  QKSIYGLKQA-RSWNIRFDTAIKSYGFEQNVDELCVYKKVVNSIVAFLVLYVDDILLIGN 121
           +KSIYGLKQA R W ++F   +  +GF Q+  +   + K+  ++   +++YVDDI++  N
Sbjct: 233 KKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSN 292

Query: 122 DVGYLTDIKKWLATQFQMKDLGDAQYVFGIQVVRN 152
           +   + ++K  L + F+++DLG  +Y  G+++ R+
Sbjct: 293 NDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARS 327

[Close]

BLAST of Cmc08g0229391 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 47.8 bits (112), Expect = 1.0e-05
Identity = 28/67 (41.79%), Postives = 38/67 (56.72%), Query Frame = 0


Query: 103 FLVLYVDDILLIGNDVGYLTDIKKWLATQFQMKDLGDAQYVFGIQVVRNRKNRTLVISQA 162
           +L+LYVDDILL G+    L  +   L++ F MKDLG   Y  GIQ+  +     L +SQ 
Sbjct: 2   YLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSG--LFLSQT 61

Query: 163 SYINKIL 170
            Y  +IL
Sbjct: 62  KYAEQIL 66

The following BLAST results are available for this feature:

BLAST of Cmc08g0229391 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK09500.1	1.6e-77	88.24	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0061927.1	2.2e-74	86.47	gag/pol protein [Cucumis melo var. makuwa]	[more]
ADJ18449.1	4.1e-73	82.94	gag/pol protein, partial [Bryonia dioica]	[more]
TYK24002.1	5.4e-73	85.88	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0045356.1	3.9e-71	81.18	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc08g0229391 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	3.3e-33	44.12	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.7e-21	35.47	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	9.4e-20	34.73	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	1.6e-19	33.53	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P25600	2.5e-12	29.93	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Cmc08g0229391 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CDT9	7.8e-78	88.24	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold499G0010...	[more]
A0A5A7V4T1	1.1e-74	86.47	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G00211...	[more]
E2GK51	2.0e-73	82.94	Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1	[more]
A0A5D3DKH2	2.6e-73	85.88	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G0074...	[more]
A0A5A7TTA2	1.9e-71	81.18	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G0013...	[more]

BLAST of Cmc08g0229391 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	2.7e-22	32.26	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	1.0e-05	41.79	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 2..169 e-value: 4.3E-41 score: 141.1
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 4..169

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0229391.1	Cmc08g0229391.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding