Cmc08g0229271 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0229271
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Replication factor C subunit 3
Location	CMiso1.1chr08: 24153295 .. 24159455 (+)
RNA-Seq Expression	Cmc08g0229271
Synteny	Cmc08g0229271

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTAAAGTTTAGACGGATACAAACACAAAGTTCGGAGGTAAATTGAAATTTTTCTTAACAAGGAAAAAAAGAAAAAAACTAAAGTCCACAGCGAACTACTGGGGCTTTCGTTTCCCCCTCCTCATCAGCCATCAGTTCTGTTTCTTTTTCCCGCCATTTCAAGCCTCGCCTAAACCTTCGCTCTCTCTTTCACTCACACTTCCTTTTTCTCTTTCTCCACACTCTCTAATCTCCGTACACCGGAGAAGATGTTGTGGGTCGACAAGTATCGTCCAAAAACCCTAGACCAGATCACAGTTCACCAAGACGTAGCACAGAATCTCAAGAAATTGGTAACCGGTTTTCGTTGTTTTTTTTTTCCTTGCATTCCTTATTTCATACTTCAATTTGGCTTTTTTTGATGTGGGTTTTCCATAAATTTTCTCCTAGGTTAATGAACAGGACTGCCCTCATTTGCTCTTCTATGGCCCCTCTGGTTCTGGGAAGAAAACCCTAGTCATGGCCCTTATCCGGCAGATGTTCGGACCCAGTGCGGAGAAGGTATTGAGTCTTGATGTTTATTTTACTGTCTCTGAAATTTTGTGATCGTTGTTCTGTCTGTTTGTTGTGTTTGATCATATCTTGCCTTTTTCCTGCAGGTGAAGGTGGAGAACAAAACGTGGAAAGTTGATGTAAGTTTCGGTTGTTTATGACAATAATTTTCATCTTTTTTAATTAAAAAAGTTGAATTTACAATAAAAGGGGACAAGTTCTTAAATAACTACTTTTTTAGTTTTAAAATTTGGCTTGATTTTTGGAAACATTGGTAGAGAGTAGATACCTAAGTAAGAAGTTTAGAGGTGGAAGGGATGTGTATAGGCATAATTTTCAAAAACTAAAAACCAAAAACCAAATGGTTGCCAAATTTGTCCTTAGTGATGCCATCTCTTTTCACATGCGTTTGAAAGCAATTGAATTCAGCTTCTGGGAAAGGAGATCTTCTAGTTATCTGTTGATATTATTACTAGTTCAGAATGGTATAGATTGGCATAAAAATTTAACTTGTTGAAGATATTATTTGGCTGTACAACTTTATATTCTCATCATCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTAAGCCCTTTCTTTTCCTTCTCAGGCTGGAACCAGAACTATTGATATAGAGCTGACAACCTTGTCAAGTGCCAACCATGTGGAGCTCACTCCTAGTGATGCAGGTTTCCAAGATAGGTATATTGTTCAAGAGATAATCAAAGAAATGGCAAAAAACAGACCAATTGATTCCAAAGGGAAAAGAGGACATAAAGGTGGTCATTTTTCCTCACCCCCTCCAACCATATTTATCAGTTGTTTATGCCTGAGTACTTACTGATTCTTTGTGGTTAATGCTTAAAATTGTTAATGATCTCACTAGCAAACAAGTATGAGATAGATTTATTGCTTGCCTAAAAAAAGATCGATTTATTGCTTGTTTGGGATCTTGTTTTATTTACCAGTATGCTTGTATGTGCAAGATTTTATATCTCTATTAGATATTGAGATTTTTAGTGCTGGTCATGTATCAGTTTTGGTTCTAAATGATGTTGACAAACTATCAAGAGAAGCTCAGCACTCTCTTAGGAGAACAATGGAGAAATATAGCTCGTACTGTAGGTTAATTCTTTGCTGCAATAGTTCATCAAGAGTTACTGAAGCAATCCGCTCTCGCTGCCTAAATGTGCGGATAAATGGACCAACAGAGGAGCAGGTCAGGAGAGAGTTTTTTTTTTTTTTTTTGTAATGTCTTATTTCTTTTTTGTTCTGAGGTATGAATTTGAGTAAACTAAATGATGGGCTGGAAGAACGTAATGTCATGTCCCTGACCAATGTGATTATTGATCAATTTTACCTGCATTCAATTTGTTCTTCGACTAAGAACTTGGAGTCAGACAACTATTGGGAACTGACGTCATATTAATAAAGGATGAAAACCCTCCCTATTGCGGCAGTGGTTAATCTAATTATTCTTCAATATGTTATTCTGGCAGTCTATGGGCAACAATTTTCTGGGTGTCTAACTTAATATTTAAATGTAAGTAGGTGAAAGATTGCCTTTTCAAATGCTTACCTATATTCACTGCCATTTTCAATTTTTGTTTCATGCTTCAACAATTTAAAGCCTTTCATAGTGATGCCTATATTCAGTAGCTTCTGCCTTTAGTTGTCGTGTAATATATTCTACCTATTTATGTACTCAAAGATTTTAGACTAGAAGGAAAAAATACGTTAGTGGATTAAGACTTTTGATTTGCAAGTTGTGGACAATGGAAAGCCTTTTCCTGTTTCATAGCGTGGTTTACATTTACGTGAAAAGTTAGTCTTCAAAAGTATTTGTTGAAAGTTTAAACATGCTATTGTAGTCATTTGGACCTAAAAGCTGTTGAAAAAGTTACGTCCTTTTACAGATTGTCAAGGTTTTAGAGTTCATTGGAAAGAAAGAAGGACTGCAACTTCCATCTGGATTTGCTTCCCGAATTGCAGAAAAATCAAGCCGGAGTTTGAGGAGAGCTATACTATCATTTGAGACTTGTCGTGTTCAACAGTTAGTCTCCACTGGGCCTCTTACAGATCTAAGCTTCTCTCTCACTTCTTATCATAAAAAAATTACCTTGGTAAACAATCTTTAAGGATTGGGACTGAGCTGTTTATTTATTTTATTTTTTGGGTTAGGTATCCTTTTGTCGGTAACCAGGCAATACCACCAATGGATTGGGAGGAGTACATCACTGAGATAGCATCTGACATAATGAAGGAGCAGAGTCCCAAGAGGTATGTCTCATGTACCTTTTTTTTTGTTGTATTCTGTACTAAAACATACATCTCAATATCATATATCTGTGGTTTTCATATACATCAATTGGGTACCTCTCTAACATTGTCATTCAAACTGCTTTTGATTCTTAAAATATGCTGCCCTAGTATTTTCATGAACAAATAATTACATAAGATAAGCAATCCTTGAACTTCTGTGGATGGTATCCTAGATTATGATGATCTTTGTCTGGTTTGGTCATGAATTGAATGAATGAAGATTCCTTTCCTTGTTGACCTTTTCTAGGAAGCAACAAGGATCTTAATCATCTTTGGTGATCTCGTGATTATGCTTCGGCAGTCTAGACTTGTTTATTTAAGTCGTTTGGCCTCAGTGTGGTTGGGCCTAGAGTTTGACATTGACCGCAATAAGCCCTTGGTTCATCTCTCTTCAGTGAAAAAAGCTAGTTTTTGTGAAGAAATGGCATTTGTGCTTTGTTATGGTGTCTTTGGGGTGAGAAATGATATTTTTCCTGTTTGGAAGAGTGGAGCATTCTAGGGAGGAAGTTTAGTGTCCCACAGTCCCCTTTTTGCTTCTGTGTGTAAGGACTTTTGTCATTGTCTGTTAGGATCTTGCTTGATTGGAGCCAATTTTCTTTTAGTGTGCCTGATTTTTGGAGATTTTTATTTTTCTCTTGGTATGCCTCTTGTATTCTTTCATTTTTTTCTCAATGAAAGTTTTGGTAGGAAAGACACATGTTCTTGACTTTTGTTTTTGTTGAGCAGAGTTGTAGAAATGTGAAAAATTGCAATTGCCTAATAGAAATATATATGTGGAGAACTAATAACTACTTTAACTGTCGTATAACTAGTTGGAGAATTGTGTGAAGTCTGAAATAAATGGACTATTTTTTTGTGTTATAGATTGTTCCAGGTTCGTGGGAAGTTATATGAGTTACTGGTGAATTGTATCCCTCCGGAGATCATATTGAAGGTAATCATTCTTCCCCAATTTCTATTGATTTTTTTTTCTCTGTTTTAATGTGATACTCATATTATCTTTTTACTCAGAGACTGCTTTATGAGCTACTCAAGAAATTGGATGCTGAATTAAAGCATGAGGTCTGTCATTGGGCTGCATATTATGTAAGTTGAATTTTGGCCTCTCAATTTGTTTAAATTCCTTTTTTTATTGTTCCACTTTTGCTGGGAATTGGAATATCAATATCATTGAAGTAAATTGTCCTCTTTTTCTTATATCAAGTTTTCCAAGTTTTCCTTGTTTTGCAATTTCTCGAATTTTTTGGTCATAACTAACTAACAGATTAGATCCTAGACTTGATAGATTGAATGTATGTGGACATATATTGGAGAGTAGTTTTTCAAAATTAAATATTTTTCTTTACTTTTGAAAGAAACGCCAATCAAGTGTCGCCTCCAAAGCACTTTAAGAACCTGTGTTAAATTTGGTGAATATTTATGGATGGAGAGGTTCTGAGCATTGAATAAAACAAACTTATATCGAGATCTATGATGCATATAGATAAAAGCAACGAAGCAAAGAATTTTAAATATACGTCTTTCTTTTTTCCTCTGGTTCTATTAGTCTGTATAATTTCAACCATGTTTTAATCTCAATGTTATCTTATTAGTTGTCTGCACTGTATACTAGCCTATAGTTCTACAAGTCTAGAATTATTTACTCTTCAGAACGCGGTCATTTCATTTTCTCAACTATTTACTTTTTGCCTCGACTTTTGAACTTTTTCTAATATCATTGAATAAATACCAAAAGTGAACTGGTTGTGCGCTTCACTTCATTTCCAATTTTCGATGCCGTAGACAATTTGTTCCTAACGACGTCTGGCTAAATTTCCATCACGATCACATAAGAAGAATCATCTACTCATTTAAGTTTGTATAATTTTGTGAATACTGTAGTGCGTTATATATCTACGTGCGTTGTATATCTACATGCATTAATTCATGAATATGATATCACAAACGAGACATGGCTAAACCATCTTGGAATGACCTAGTGGTAAAAATAGGAGACATAGTCTCAGTAACCAATCAAGAGGTCATGGGTTCAATCCATGGTCATGATGGTCACCTTCTTAGGAATTAATTTCTTACGGGTTTCCTTGACACCCAAATGTTGTAGGGTGCAGGCTGTCTCGTGAGATTAGTCGAGATGCACAGATGAAAAATGGCCGGAGAGAGTTTCACCTTTTGTCAATTTTTCATTTTTGGTTAAATCTTTTTCCAGGAACACAGGATGCGTCTTGGACAGAAAGCCATCTTCCACATAGAAGGTAAATGTATTCAGCATACACATAGCACGGAGTAACTGTTCTGACACAAAAATATAACTTCTGTGTTCTTCTTACTTCCTCTGGTTTTATTAGTTAGCCCGGCTAACTTGGCCACAATCATAATTTCATTTTAAGAACCTTTAATCCATCAAATAATGGATAGATACCGTCATACAATTTGATGGTTTGGAAATGATCGGCTATCCATGTTAAACTGAAAAAGAAATTGTTGACTGCAACTTTAGAGTAGTGAGTTTTGAATGTTTTTATATCGTGAATTTGACTTTTCATGATCTGACATTTTGTTAGGATACTTTCTAACTAGAAGTAAGATCGATAGTATATTCAATAACTTTCTGTCTAATTATCCTTATATCTCCTAATACTACTGTAATAATATTCTTATATAGGTACCTTATACATGTGTAAAAAGATTTCTTGTCTCTAAGTTCTCTATCTTGACGAAGGCAAAATTCGCTCTGTCAGTTTTGATTTTTGAAGTATTATTTTTGTCTGATGATGCAGCTTTTGTGGCGAAGTTCATGAGCATATACAAGACTTTCCTCATTTCAACATTCGGCTAAAGAGAAGAAAAGTAGAGCCTGAAATTATTTCATTCAGGAAAAGCAATTGTAAGTTCATAGATCTGCTGTGACATTGAATCAAGTTAATCTGATGTATTTATTATATCTTCTTTAGTCAGTTTGGTATGATACTCTAGATGTTCATCCTCCTTTAGGTTTTCTCTATTAGGGAACTTGAAGCTGCACTTTGAGGGATTTGAACTGAATCTTACATGGGGAAAAAATATTTCCAGTCATTTTGTAGCACTAATAGAAAAGAGAGGCCATGCTCCCATCATTGATAATTGGCTGTTTTTTTCTCCTCTTTTTCTCTCTGGTATTTCTTCTTTGTTTAATTTGCAAACGTTTATAATTAGCATTTAGTTTTGTAATTCCTAGGATAGAAAATAGAAATAATAAATTCTAAACTCTTAAAACCACGATTAAATTCTAAACTCTTAAAATGACCAAATTTATATTT

mRNA sequence

TTTAAAGTTTAGACGGATACAAACACAAAGTTCGGAGGTAAATTGAAATTTTTCTTAACAAGGAAAAAAAGAAAAAAACTAAAGTCCACAGCGAACTACTGGGGCTTTCGTTTCCCCCTCCTCATCAGCCATCAGTTCTGTTTCTTTTTCCCGCCATTTCAAGCCTCGCCTAAACCTTCGCTCTCTCTTTCACTCACACTTCCTTTTTCTCTTTCTCCACACTCTCTAATCTCCGTACACCGGAGAAGATGTTGTGGGTCGACAAGTATCGTCCAAAAACCCTAGACCAGATCACAGTTCACCAAGACGTAGCACAGAATCTCAAGAAATTGGTTAATGAACAGGACTGCCCTCATTTGCTCTTCTATGGCCCCTCTGGTTCTGGGAAGAAAACCCTAGTCATGGCCCTTATCCGGCAGATGTTCGGACCCAGTGCGGAGAAGGTGAAGGTGGAGAACAAAACGTGGAAAGTTGATGCTGGAACCAGAACTATTGATATAGAGCTGACAACCTTGTCAAGTGCCAACCATGTGGAGCTCACTCCTAGTGATGCAGGTTTCCAAGATAGGTATATTGTTCAAGAGATAATCAAAGAAATGGCAAAAAACAGACCAATTGATTCCAAAGGGAAAAGAGGACATAAAGGTGTTTTGGTTCTAAATGATGTTGACAAACTATCAAGAGAAGCTCAGCACTCTCTTAGGAGAACAATGGAGAAATATAGCTCGTACTGTAGGTTAATTCTTTGCTGCAATAGTTCATCAAGAGTTACTGAAGCAATCCGCTCTCGCTGCCTAAATGTGCGGATAAATGGACCAACAGAGGAGCAGATTGTCAAGGTTTTAGAGTTCATTGGAAAGAAAGAAGGACTGCAACTTCCATCTGGATTTGCTTCCCGAATTGCAGAAAAATCAAGCCGGAGTTTGAGGAGAGCTATACTATCATTTGAGACTTGTCGTGTTCAACAGTATCCTTTTGTCGGTAACCAGGCAATACCACCAATGGATTGGGAGGAGTACATCACTGAGATAGCATCTGACATAATGAAGGAGCAGAGTCCCAAGAGATTGTTCCAGGTTCGTGGGAAGTTATATGAGTTACTGGTGAATTGTATCCCTCCGGAGATCATATTGAAGAGACTGCTTTATGAGCTACTCAAGAAATTGGATGCTGAATTAAAGCATGAGGTCTGTCATTGGGCTGCATATTATGAACACAGGATGCGTCTTGGACAGAAAGCCATCTTCCACATAGAAGCTTTTGTGGCGAAGTTCATGAGCATATACAAGACTTTCCTCATTTCAACATTCGGCTAAAGAGAAGAAAAGTAGAGCCTGAAATTATTTCATTCAGGAAAAGCAATTGTTTTCTCTATTAGGGAACTTGAAGCTGCACTTTGAGGGATTTGAACTGAATCTTACATGGGGAAAAAATATTTCCAGTCATTTTGTAGCACTAATAGAAAAGAGAGGCCATGCTCCCATCATTGATAATTGGCTGTTTTTTTCTCCTCTTTTTCTCTCTGGTATTTCTTCTTTGTTTAATTTGCAAACGTTTATAATTAGCATTTAGTTTTGTAATTCCTAGGATAGAAAATAGAAATAATAAATTCTAAACTCTTAAAACCACGATTAAATTCTAAACTCTTAAAATGACCAAATTTATATTT

Coding sequence (CDS)

ATGTTGTGGGTCGACAAGTATCGTCCAAAAACCCTAGACCAGATCACAGTTCACCAAGACGTAGCACAGAATCTCAAGAAATTGGTTAATGAACAGGACTGCCCTCATTTGCTCTTCTATGGCCCCTCTGGTTCTGGGAAGAAAACCCTAGTCATGGCCCTTATCCGGCAGATGTTCGGACCCAGTGCGGAGAAGGTGAAGGTGGAGAACAAAACGTGGAAAGTTGATGCTGGAACCAGAACTATTGATATAGAGCTGACAACCTTGTCAAGTGCCAACCATGTGGAGCTCACTCCTAGTGATGCAGGTTTCCAAGATAGGTATATTGTTCAAGAGATAATCAAAGAAATGGCAAAAAACAGACCAATTGATTCCAAAGGGAAAAGAGGACATAAAGGTGTTTTGGTTCTAAATGATGTTGACAAACTATCAAGAGAAGCTCAGCACTCTCTTAGGAGAACAATGGAGAAATATAGCTCGTACTGTAGGTTAATTCTTTGCTGCAATAGTTCATCAAGAGTTACTGAAGCAATCCGCTCTCGCTGCCTAAATGTGCGGATAAATGGACCAACAGAGGAGCAGATTGTCAAGGTTTTAGAGTTCATTGGAAAGAAAGAAGGACTGCAACTTCCATCTGGATTTGCTTCCCGAATTGCAGAAAAATCAAGCCGGAGTTTGAGGAGAGCTATACTATCATTTGAGACTTGTCGTGTTCAACAGTATCCTTTTGTCGGTAACCAGGCAATACCACCAATGGATTGGGAGGAGTACATCACTGAGATAGCATCTGACATAATGAAGGAGCAGAGTCCCAAGAGATTGTTCCAGGTTCGTGGGAAGTTATATGAGTTACTGGTGAATTGTATCCCTCCGGAGATCATATTGAAGAGACTGCTTTATGAGCTACTCAAGAAATTGGATGCTGAATTAAAGCATGAGGTCTGTCATTGGGCTGCATATTATGAACACAGGATGCGTCTTGGACAGAAAGCCATCTTCCACATAGAAGCTTTTGTGGCGAAGTTCATGAGCATATACAAGACTTTCCTCATTTCAACATTCGGCTAA

Protein sequence

MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFGPSAEKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKNRPIDSKGKRGHKGVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSRCLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSSRSLRRAILSFETCRVQQYPFVGNQAIPPMDWEEYITEIASDIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG

Homology

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BLAST of Cmc08g0229271 vs. NCBI nr
Match: XP_008442036.1 (PREDICTED: replication factor C subunit 3 [Cucumis melo] >XP_008442037.1 PREDICTED: replication factor C subunit 3 [Cucumis melo] >XP_008442038.1 PREDICTED: replication factor C subunit 3 [Cucumis melo] >KAA0041829.1 replication factor C subunit 3 [Cucumis melo var. makuwa] >TYK05351.1 replication factor C subunit 3 [Cucumis melo var. makuwa])

HSP 1 Score: 701.8 bits (1810), Expect = 3.0e-198
Identity = 354/355 (99.72%), Postives = 354/355 (99.72%), Query Frame = 0


Query: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60
           MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG
Sbjct: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60

Query: 61  PSAEKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN 120
           PSAEKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN
Sbjct: 61  PSAEKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN 120

Query: 121 RPIDSKGKRGHKGVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRS 180
           RPIDSKGKRGHK VLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRS
Sbjct: 121 RPIDSKGKRGHK-VLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRS 180

Query: 181 RCLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSSRSLRRAILSFETCRVQQ 240
           RCLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSSRSLRRAILSFETCRVQQ
Sbjct: 181 RCLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSSRSLRRAILSFETCRVQQ 240

Query: 241 YPFVGNQAIPPMDWEEYITEIASDIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLY 300
           YPFVGNQAIPPMDWEEYITEIASDIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLY
Sbjct: 241 YPFVGNQAIPPMDWEEYITEIASDIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLY 300

Query: 301 ELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 356
           ELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG
Sbjct: 301 ELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 354

[Close]

BLAST of Cmc08g0229271 vs. NCBI nr
Match: XP_004144654.1 (replication factor C subunit 3 [Cucumis sativus] >KGN54900.1 hypothetical protein Csa_012378 [Cucumis sativus])

HSP 1 Score: 692.6 bits (1786), Expect = 1.8e-195
Identity = 348/355 (98.03%), Postives = 352/355 (99.15%), Query Frame = 0


Query: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60
           MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG
Sbjct: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60

Query: 61  PSAEKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN 120
           PSA+KVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN
Sbjct: 61  PSADKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN 120

Query: 121 RPIDSKGKRGHKGVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRS 180
           RPIDSKGKRGHK VLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRS
Sbjct: 121 RPIDSKGKRGHK-VLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRS 180

Query: 181 RCLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSSRSLRRAILSFETCRVQQ 240
           RCLNVRINGPTEEQI KVLE+IGKKEGLQLPSGFASRIAEKS+RSLRRAILSFETCRVQQ
Sbjct: 181 RCLNVRINGPTEEQIFKVLEYIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQ 240

Query: 241 YPFVGNQAIPPMDWEEYITEIASDIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLY 300
           YPFV NQAIPPMDWEEYITEIAS+IMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLY
Sbjct: 241 YPFVSNQAIPPMDWEEYITEIASEIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLY 300

Query: 301 ELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 356
           ELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG
Sbjct: 301 ELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 354

[Close]

BLAST of Cmc08g0229271 vs. NCBI nr
Match: XP_022154548.1 (replication factor C subunit 3 [Momordica charantia] >XP_022154549.1 replication factor C subunit 3 [Momordica charantia])

HSP 1 Score: 677.2 bits (1746), Expect = 7.8e-191
Identity = 340/355 (95.77%), Postives = 345/355 (97.18%), Query Frame = 0


Query: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60
           MLWVDKYRPKTLDQ+TVHQDVAQNLKKLV EQDCPHLLFYGPSGSGKKTLVMALIRQMFG
Sbjct: 1   MLWVDKYRPKTLDQVTVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60

Query: 61  PSAEKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN 120
            SAEKVKVENKTWKVDAGTRTIDIELTTLSS NHVELTPSDAGFQDRYIVQ+IIKEMAKN
Sbjct: 61  ASAEKVKVENKTWKVDAGTRTIDIELTTLSSTNHVELTPSDAGFQDRYIVQDIIKEMAKN 120

Query: 121 RPIDSKGKRGHKGVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRS 180
           RPIDSKGKRGHK VLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRS
Sbjct: 121 RPIDSKGKRGHK-VLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRS 180

Query: 181 RCLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSSRSLRRAILSFETCRVQQ 240
           RCLNVRINGPTEEQIVKVLE IGKKEGLQLP GFASRIAEKS+RSLRRAILSFETCRVQQ
Sbjct: 181 RCLNVRINGPTEEQIVKVLELIGKKEGLQLPPGFASRIAEKSNRSLRRAILSFETCRVQQ 240

Query: 241 YPFVGNQAIPPMDWEEYITEIASDIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLY 300
           YPF  NQAIPPMDWEEYI+EIASDIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLY
Sbjct: 241 YPFASNQAIPPMDWEEYISEIASDIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLY 300

Query: 301 ELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 356
           ELLKKLDAEL+HEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYK FLIS FG
Sbjct: 301 ELLKKLDAELQHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKNFLISAFG 354

[Close]

BLAST of Cmc08g0229271 vs. NCBI nr
Match: XP_022950838.1 (replication factor C subunit 3 isoform X2 [Cucurbita moschata])

HSP 1 Score: 676.4 bits (1744), Expect = 1.3e-190
Identity = 337/355 (94.93%), Postives = 349/355 (98.31%), Query Frame = 0


Query: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60
           MLWVDKYRPKTLDQITVHQDVAQNLKKLV EQDCPHLLF+GPSGSGKKTLVMALIRQMFG
Sbjct: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFFGPSGSGKKTLVMALIRQMFG 60

Query: 61  PSAEKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN 120
            SAEKVKVENKTWKVDAGTR ++IELTT+SS NHVELTPSDAGFQDRYIVQEIIK+MAKN
Sbjct: 61  ASAEKVKVENKTWKVDAGTRNVEIELTTISSTNHVELTPSDAGFQDRYIVQEIIKDMAKN 120

Query: 121 RPIDSKGKRGHKGVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRS 180
           RPIDSKGKRGHK VLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRS
Sbjct: 121 RPIDSKGKRGHK-VLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRS 180

Query: 181 RCLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSSRSLRRAILSFETCRVQQ 240
           RCLNVRINGPT++QIVKVLEFIGKKEGLQLPSGFASRIAEKS+RSLRRAILSFETCRVQQ
Sbjct: 181 RCLNVRINGPTDDQIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQ 240

Query: 241 YPFVGNQAIPPMDWEEYITEIASDIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLY 300
           YPFV NQAIPPMDWEEYI+EIASDIMKEQSPKRL+QVRGKLYELLVNCIPPEIILKRLLY
Sbjct: 241 YPFVSNQAIPPMDWEEYISEIASDIMKEQSPKRLYQVRGKLYELLVNCIPPEIILKRLLY 300

Query: 301 ELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 356
           ELLKKLDAELKHEVCHWAAYYEHRMRLGQK+IFHIEAFVAKFMSIYK+FLISTFG
Sbjct: 301 ELLKKLDAELKHEVCHWAAYYEHRMRLGQKSIFHIEAFVAKFMSIYKSFLISTFG 354

[Close]

BLAST of Cmc08g0229271 vs. NCBI nr
Match: XP_022978217.1 (replication factor C subunit 3 [Cucurbita maxima])

HSP 1 Score: 674.1 bits (1738), Expect = 6.6e-190
Identity = 335/355 (94.37%), Postives = 349/355 (98.31%), Query Frame = 0


Query: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60
           MLWVDKYRPKTLDQITVH+DVAQNLKKLV EQDCPHLLF+GPSGSGKKTLVMALIRQMFG
Sbjct: 1   MLWVDKYRPKTLDQITVHEDVAQNLKKLVTEQDCPHLLFFGPSGSGKKTLVMALIRQMFG 60

Query: 61  PSAEKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN 120
            SAEKVKVENKTWKVDAGTR ++IELTT+SS NHVELTPSDAGFQDRYIVQEIIK+MAKN
Sbjct: 61  ASAEKVKVENKTWKVDAGTRNVEIELTTISSTNHVELTPSDAGFQDRYIVQEIIKDMAKN 120

Query: 121 RPIDSKGKRGHKGVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRS 180
           RPIDSKGKRGHK VLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRS
Sbjct: 121 RPIDSKGKRGHK-VLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRS 180

Query: 181 RCLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSSRSLRRAILSFETCRVQQ 240
           RCLNVRINGPT+++IVKVLEFIGKKEGLQLPSGFASRIAEKS+RSLRRAILSFETCRVQQ
Sbjct: 181 RCLNVRINGPTDDEIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQ 240

Query: 241 YPFVGNQAIPPMDWEEYITEIASDIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLY 300
           YPFV NQAIPPMDWEEYI+EIASDIMKEQSPKRL+QVRGKLYELLVNCIPPEIILKRLLY
Sbjct: 241 YPFVSNQAIPPMDWEEYISEIASDIMKEQSPKRLYQVRGKLYELLVNCIPPEIILKRLLY 300

Query: 301 ELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 356
           ELLKKLDAELKHEVCHWAAYYEHRMRLGQK+IFHIEAFVAKFMSIYK+FLISTFG
Sbjct: 301 ELLKKLDAELKHEVCHWAAYYEHRMRLGQKSIFHIEAFVAKFMSIYKSFLISTFG 354

[Close]

BLAST of Cmc08g0229271 vs. ExPASy Swiss-Prot
Match: Q8VXX4 (Replication factor C subunit 3 OS=Arabidopsis thaliana OX=3702 GN=RFC3 PE=2 SV=1)

HSP 1 Score: 621.3 bits (1601), Expect = 6.7e-177
Identity = 302/355 (85.07%), Postives = 336/355 (94.65%), Query Frame = 0


Query: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60
           MLWVDKYRPK+LD++ VH+D+AQ LKKLV+EQDCPHLLFYGPSGSGKKTL+MAL++Q++G
Sbjct: 1   MLWVDKYRPKSLDKVIVHEDIAQKLKKLVSEQDCPHLLFYGPSGSGKKTLIMALLKQIYG 60

Query: 61  PSAEKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN 120
            SAEKVKVEN+ WKVDAG+RTID+ELTTLSS NHVELTPSDAGFQDRYIVQEIIKEMAKN
Sbjct: 61  ASAEKVKVENRAWKVDAGSRTIDLELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKN 120

Query: 121 RPIDSKGKRGHKGVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRS 180
           RPID+KGK+G+K VLVLN+VDKLSREAQHSLRRTMEKYSS CRLILCCNSSS+VTEAI+S
Sbjct: 121 RPIDTKGKKGYK-VLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKS 180

Query: 181 RCLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSSRSLRRAILSFETCRVQQ 240
           RCLNVRIN P++E+IVKVLEF+ KKE LQLP GFA+RIAEKS+RSLRRAILS ETCRVQ 
Sbjct: 181 RCLNVRINAPSQEEIVKVLEFVAKKESLQLPQGFAARIAEKSNRSLRRAILSLETCRVQN 240

Query: 241 YPFVGNQAIPPMDWEEYITEIASDIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLY 300
           YPF GNQ I PMDWEEY+ EIA+D+MKEQSPK+LFQVRGK+YELLVNCIPPE+ILKRLL+
Sbjct: 241 YPFTGNQVISPMDWEEYVAEIATDMMKEQSPKKLFQVRGKVYELLVNCIPPEVILKRLLH 300

Query: 301 ELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 356
           ELLKKLD+ELK EVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYK FLISTFG
Sbjct: 301 ELLKKLDSELKLEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKNFLISTFG 354

[Close]

BLAST of Cmc08g0229271 vs. ExPASy Swiss-Prot
Match: Q852K3 (Replication factor C subunit 5 OS=Oryza sativa subsp. japonica OX=39947 GN=RFC5 PE=2 SV=1)

HSP 1 Score: 593.2 bits (1528), Expect = 2.0e-168
Identity = 286/355 (80.56%), Postives = 325/355 (91.55%), Query Frame = 0


Query: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60
           MLWVDKYRPKTLD++TVH  VAQNLKKLV EQDCPHLLFYGPSGSGKKTLVMALI+QMFG
Sbjct: 1   MLWVDKYRPKTLDKVTVHDQVAQNLKKLVAEQDCPHLLFYGPSGSGKKTLVMALIKQMFG 60

Query: 61  PSAEKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN 120
             A+KVK+ENKTWK+D G+R I+IEL  LSSA+HVE+ PSDAGFQDRY+VQE+IKEMAKN
Sbjct: 61  AGADKVKMENKTWKIDTGSRNIEIELAMLSSAHHVEMNPSDAGFQDRYVVQEVIKEMAKN 120

Query: 121 RPIDSKGKRGHKGVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRS 180
           RPID+KGKR  K VLVLN+VDKLSREAQHSLRRTMEKYS+ CRLILCCNSSS+VTEA+RS
Sbjct: 121 RPIDAKGKRAFK-VLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRS 180

Query: 181 RCLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSSRSLRRAILSFETCRVQQ 240
           RCLNVR+N P+E+QIV+VLEFIGKKE LQLP GFA+RIA +S+R+LRRAIL FETC+VQQ
Sbjct: 181 RCLNVRVNAPSEDQIVQVLEFIGKKENLQLPFGFAARIAAQSNRNLRRAILFFETCKVQQ 240

Query: 241 YPFVGNQAIPPMDWEEYITEIASDIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLY 300
           YPF  NQ  PP+DWE+Y++EIA+DIMKEQSPKRLF VR K YELLVNCIPPE ILK+LL 
Sbjct: 241 YPFTSNQVAPPLDWEQYVSEIAADIMKEQSPKRLFAVRQKFYELLVNCIPPESILKKLLA 300

Query: 301 ELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 356
           ELLKKLD++LKHE+CHWAA+YEH+MRLG KAIFH+EAFVAKFMSIYK FL+STFG
Sbjct: 301 ELLKKLDSDLKHEICHWAAHYEHKMRLGSKAIFHLEAFVAKFMSIYKEFLVSTFG 354

[Close]

BLAST of Cmc08g0229271 vs. ExPASy Swiss-Prot
Match: P40938 (Replication factor C subunit 3 OS=Homo sapiens OX=9606 GN=RFC3 PE=1 SV=2)

HSP 1 Score: 383.6 bits (984), Expect = 2.3e-105
Identity = 188/349 (53.87%), Postives = 261/349 (74.79%), Query Frame = 0


Query: 2   LWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFGP 61
           LWVDKYRP +L ++  H++ A  L+ LV   D PHLL YGPSG+GKKT +M ++R+++G 
Sbjct: 3   LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62

Query: 62  SAEKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKNR 121
             EK+++E++T    +  +   IE++T++S  H+E+ PSDAG  DR ++QE++K +A+++
Sbjct: 63  GVEKLRIEHQTITTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 122

Query: 122 PIDSKGKRGHKGVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 181
            +++  +R  K V++L +VDKL+++AQH+LRRTMEKY S CRLILCCNS+S+V   IRSR
Sbjct: 123 QLETNSQRDFK-VVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSR 182

Query: 182 CLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSSRSLRRAILSFETCRVQQY 241
           CL VR+  P+ E I  VL  + KKEGL LPS  A R+AEKS R+LR+A+L  E CRVQQY
Sbjct: 183 CLAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQY 242

Query: 242 PFVGNQAIPPMDWEEYITEIASDIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLYE 301
           PF  +Q IP  DWE Y+ E A+ I+ +Q+P+RL +VRG+LYELL +CIPPEII+K LL E
Sbjct: 243 PFTADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSE 302

Query: 302 LLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFL 351
           LL   D +LK EV   AAYYEHR++LG KAI+H+EAFVAKFM++YK F+
Sbjct: 303 LLHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFM 347

[Close]

BLAST of Cmc08g0229271 vs. ExPASy Swiss-Prot
Match: Q2TBV1 (Replication factor C subunit 3 OS=Bos taurus OX=9913 GN=RFC3 PE=2 SV=1)

HSP 1 Score: 382.1 bits (980), Expect = 6.8e-105
Identity = 187/349 (53.58%), Postives = 260/349 (74.50%), Query Frame = 0


Query: 2   LWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFGP 61
           LWVDKYRP +L Q+  H++ A  L+ LV   D PHLL YGPSG+GKKT +M ++R+++G 
Sbjct: 3   LWVDKYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62

Query: 62  SAEKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKNR 121
             EK+++E++T    +  +   IE++T++S  H+E+ PSDAG  DR ++QE++K +A+++
Sbjct: 63  GVEKLRIEHQTITTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 122

Query: 122 PIDSKGKRGHKGVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 181
            +++  ++  K V++L +VDKL+++AQH+LRRTMEKY S CRLILCCNS+S+V   IRSR
Sbjct: 123 QLETSSQKDFK-VVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSR 182

Query: 182 CLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSSRSLRRAILSFETCRVQQY 241
           CL VR+  P+ E I  VL  + KKEGL LP   A R+AEKS R+LR+A+L  E CRVQQY
Sbjct: 183 CLAVRVPAPSIEDICHVLSTVCKKEGLNLPPQLAHRLAEKSCRNLRKALLMCEACRVQQY 242

Query: 242 PFVGNQAIPPMDWEEYITEIASDIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLYE 301
           PF  +Q IP  DWE Y+ E A+ I+ +Q+P+RL +VRG+LYELL +CIPPEII+K LL E
Sbjct: 243 PFTADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSE 302

Query: 302 LLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFL 351
           LL   D +LK EV   AAYYEHR++LG KAI+H+EAFVAKFM++YK F+
Sbjct: 303 LLHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFM 347

[Close]

BLAST of Cmc08g0229271 vs. ExPASy Swiss-Prot
Match: Q8R323 (Replication factor C subunit 3 OS=Mus musculus OX=10090 GN=Rfc3 PE=1 SV=1)

HSP 1 Score: 382.1 bits (980), Expect = 6.8e-105
Identity = 187/349 (53.58%), Postives = 261/349 (74.79%), Query Frame = 0


Query: 2   LWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFGP 61
           LWVDKYRP +L ++  H++ A  L+ LV   D PHLL YGPSG+GKKT +M ++R+++G 
Sbjct: 3   LWVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGI 62

Query: 62  SAEKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKNR 121
             EK+++E++T    +  +   IE++T++S  H+E+ PSDAG  DR ++QE++K +A+++
Sbjct: 63  GVEKLRIEHQTITTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 122

Query: 122 PIDSKGKRGHKGVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 181
            +++  +R  K V++L +VDKL+++AQH+LRRTMEKY S CRLILCCNS+S+V   IRSR
Sbjct: 123 QLETSSQRDFK-VVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSR 182

Query: 182 CLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSSRSLRRAILSFETCRVQQY 241
           CL VR+  P+ E I  VL  + +KEGL LPS  A R+AEKS R+LR+A+L  E CRVQQY
Sbjct: 183 CLAVRVPAPSIEDICSVLSTVCRKEGLALPSTLARRLAEKSCRNLRKALLMCEACRVQQY 242

Query: 242 PFVGNQAIPPMDWEEYITEIASDIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLYE 301
           PF  +Q IP  DWE Y+ E A+ I+ +Q+P+RL +VRG+LYELL +CIPPEII+K LL E
Sbjct: 243 PFTEDQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSE 302

Query: 302 LLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFL 351
           LL   D +LK EV   AAYYEHR++LG KAI+H+EAFVAKFM++YK F+
Sbjct: 303 LLHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFM 347

[Close]

BLAST of Cmc08g0229271 vs. ExPASy TrEMBL
Match: A0A1S3B4A5 (replication factor C subunit 3 OS=Cucumis melo OX=3656 GN=LOC103486020 PE=4 SV=1)

HSP 1 Score: 701.8 bits (1810), Expect = 1.4e-198
Identity = 354/355 (99.72%), Postives = 354/355 (99.72%), Query Frame = 0


Query: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60
           MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG
Sbjct: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60

Query: 61  PSAEKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN 120
           PSAEKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN
Sbjct: 61  PSAEKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN 120

Query: 121 RPIDSKGKRGHKGVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRS 180
           RPIDSKGKRGHK VLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRS
Sbjct: 121 RPIDSKGKRGHK-VLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRS 180

Query: 181 RCLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSSRSLRRAILSFETCRVQQ 240
           RCLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSSRSLRRAILSFETCRVQQ
Sbjct: 181 RCLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSSRSLRRAILSFETCRVQQ 240

Query: 241 YPFVGNQAIPPMDWEEYITEIASDIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLY 300
           YPFVGNQAIPPMDWEEYITEIASDIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLY
Sbjct: 241 YPFVGNQAIPPMDWEEYITEIASDIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLY 300

Query: 301 ELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 356
           ELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG
Sbjct: 301 ELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 354

[Close]

BLAST of Cmc08g0229271 vs. ExPASy TrEMBL
Match: A0A5D3C0B6 (Replication factor C subunit 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83G00180 PE=4 SV=1)

HSP 1 Score: 701.8 bits (1810), Expect = 1.4e-198
Identity = 354/355 (99.72%), Postives = 354/355 (99.72%), Query Frame = 0


Query: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60
           MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG
Sbjct: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60

Query: 61  PSAEKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN 120
           PSAEKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN
Sbjct: 61  PSAEKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN 120

Query: 121 RPIDSKGKRGHKGVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRS 180
           RPIDSKGKRGHK VLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRS
Sbjct: 121 RPIDSKGKRGHK-VLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRS 180

Query: 181 RCLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSSRSLRRAILSFETCRVQQ 240
           RCLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSSRSLRRAILSFETCRVQQ
Sbjct: 181 RCLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSSRSLRRAILSFETCRVQQ 240

Query: 241 YPFVGNQAIPPMDWEEYITEIASDIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLY 300
           YPFVGNQAIPPMDWEEYITEIASDIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLY
Sbjct: 241 YPFVGNQAIPPMDWEEYITEIASDIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLY 300

Query: 301 ELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 356
           ELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG
Sbjct: 301 ELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 354

[Close]

BLAST of Cmc08g0229271 vs. ExPASy TrEMBL
Match: A0A0A0KYY3 (AAA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G579870 PE=4 SV=1)

HSP 1 Score: 692.6 bits (1786), Expect = 8.7e-196
Identity = 348/355 (98.03%), Postives = 352/355 (99.15%), Query Frame = 0


Query: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60
           MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG
Sbjct: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60

Query: 61  PSAEKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN 120
           PSA+KVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN
Sbjct: 61  PSADKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN 120

Query: 121 RPIDSKGKRGHKGVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRS 180
           RPIDSKGKRGHK VLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRS
Sbjct: 121 RPIDSKGKRGHK-VLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRS 180

Query: 181 RCLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSSRSLRRAILSFETCRVQQ 240
           RCLNVRINGPTEEQI KVLE+IGKKEGLQLPSGFASRIAEKS+RSLRRAILSFETCRVQQ
Sbjct: 181 RCLNVRINGPTEEQIFKVLEYIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQ 240

Query: 241 YPFVGNQAIPPMDWEEYITEIASDIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLY 300
           YPFV NQAIPPMDWEEYITEIAS+IMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLY
Sbjct: 241 YPFVSNQAIPPMDWEEYITEIASEIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLY 300

Query: 301 ELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 356
           ELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG
Sbjct: 301 ELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 354

[Close]

BLAST of Cmc08g0229271 vs. ExPASy TrEMBL
Match: A0A6J1DMG0 (replication factor C subunit 3 OS=Momordica charantia OX=3673 GN=LOC111021793 PE=4 SV=1)

HSP 1 Score: 677.2 bits (1746), Expect = 3.8e-191
Identity = 340/355 (95.77%), Postives = 345/355 (97.18%), Query Frame = 0


Query: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60
           MLWVDKYRPKTLDQ+TVHQDVAQNLKKLV EQDCPHLLFYGPSGSGKKTLVMALIRQMFG
Sbjct: 1   MLWVDKYRPKTLDQVTVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60

Query: 61  PSAEKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN 120
            SAEKVKVENKTWKVDAGTRTIDIELTTLSS NHVELTPSDAGFQDRYIVQ+IIKEMAKN
Sbjct: 61  ASAEKVKVENKTWKVDAGTRTIDIELTTLSSTNHVELTPSDAGFQDRYIVQDIIKEMAKN 120

Query: 121 RPIDSKGKRGHKGVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRS 180
           RPIDSKGKRGHK VLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRS
Sbjct: 121 RPIDSKGKRGHK-VLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRS 180

Query: 181 RCLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSSRSLRRAILSFETCRVQQ 240
           RCLNVRINGPTEEQIVKVLE IGKKEGLQLP GFASRIAEKS+RSLRRAILSFETCRVQQ
Sbjct: 181 RCLNVRINGPTEEQIVKVLELIGKKEGLQLPPGFASRIAEKSNRSLRRAILSFETCRVQQ 240

Query: 241 YPFVGNQAIPPMDWEEYITEIASDIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLY 300
           YPF  NQAIPPMDWEEYI+EIASDIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLY
Sbjct: 241 YPFASNQAIPPMDWEEYISEIASDIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLY 300

Query: 301 ELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 356
           ELLKKLDAEL+HEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYK FLIS FG
Sbjct: 301 ELLKKLDAELQHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKNFLISAFG 354

[Close]

BLAST of Cmc08g0229271 vs. ExPASy TrEMBL
Match: A0A6J1GG01 (replication factor C subunit 3 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111453820 PE=4 SV=1)

HSP 1 Score: 676.4 bits (1744), Expect = 6.5e-191
Identity = 337/355 (94.93%), Postives = 349/355 (98.31%), Query Frame = 0


Query: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60
           MLWVDKYRPKTLDQITVHQDVAQNLKKLV EQDCPHLLF+GPSGSGKKTLVMALIRQMFG
Sbjct: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFFGPSGSGKKTLVMALIRQMFG 60

Query: 61  PSAEKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN 120
            SAEKVKVENKTWKVDAGTR ++IELTT+SS NHVELTPSDAGFQDRYIVQEIIK+MAKN
Sbjct: 61  ASAEKVKVENKTWKVDAGTRNVEIELTTISSTNHVELTPSDAGFQDRYIVQEIIKDMAKN 120

Query: 121 RPIDSKGKRGHKGVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRS 180
           RPIDSKGKRGHK VLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRS
Sbjct: 121 RPIDSKGKRGHK-VLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRS 180

Query: 181 RCLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSSRSLRRAILSFETCRVQQ 240
           RCLNVRINGPT++QIVKVLEFIGKKEGLQLPSGFASRIAEKS+RSLRRAILSFETCRVQQ
Sbjct: 181 RCLNVRINGPTDDQIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQ 240

Query: 241 YPFVGNQAIPPMDWEEYITEIASDIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLY 300
           YPFV NQAIPPMDWEEYI+EIASDIMKEQSPKRL+QVRGKLYELLVNCIPPEIILKRLLY
Sbjct: 241 YPFVSNQAIPPMDWEEYISEIASDIMKEQSPKRLYQVRGKLYELLVNCIPPEIILKRLLY 300

Query: 301 ELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 356
           ELLKKLDAELKHEVCHWAAYYEHRMRLGQK+IFHIEAFVAKFMSIYK+FLISTFG
Sbjct: 301 ELLKKLDAELKHEVCHWAAYYEHRMRLGQKSIFHIEAFVAKFMSIYKSFLISTFG 354

[Close]

BLAST of Cmc08g0229271 vs. TAIR 10
Match: AT5G27740.1 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 621.3 bits (1601), Expect = 4.8e-178
Identity = 302/355 (85.07%), Postives = 336/355 (94.65%), Query Frame = 0


Query: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60
           MLWVDKYRPK+LD++ VH+D+AQ LKKLV+EQDCPHLLFYGPSGSGKKTL+MAL++Q++G
Sbjct: 1   MLWVDKYRPKSLDKVIVHEDIAQKLKKLVSEQDCPHLLFYGPSGSGKKTLIMALLKQIYG 60

Query: 61  PSAEKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN 120
            SAEKVKVEN+ WKVDAG+RTID+ELTTLSS NHVELTPSDAGFQDRYIVQEIIKEMAKN
Sbjct: 61  ASAEKVKVENRAWKVDAGSRTIDLELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKN 120

Query: 121 RPIDSKGKRGHKGVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRS 180
           RPID+KGK+G+K VLVLN+VDKLSREAQHSLRRTMEKYSS CRLILCCNSSS+VTEAI+S
Sbjct: 121 RPIDTKGKKGYK-VLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKS 180

Query: 181 RCLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSSRSLRRAILSFETCRVQQ 240
           RCLNVRIN P++E+IVKVLEF+ KKE LQLP GFA+RIAEKS+RSLRRAILS ETCRVQ 
Sbjct: 181 RCLNVRINAPSQEEIVKVLEFVAKKESLQLPQGFAARIAEKSNRSLRRAILSLETCRVQN 240

Query: 241 YPFVGNQAIPPMDWEEYITEIASDIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLY 300
           YPF GNQ I PMDWEEY+ EIA+D+MKEQSPK+LFQVRGK+YELLVNCIPPE+ILKRLL+
Sbjct: 241 YPFTGNQVISPMDWEEYVAEIATDMMKEQSPKKLFQVRGKVYELLVNCIPPEVILKRLLH 300

Query: 301 ELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 356
           ELLKKLD+ELK EVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYK FLISTFG
Sbjct: 301 ELLKKLDSELKLEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKNFLISTFG 354

[Close]

BLAST of Cmc08g0229271 vs. TAIR 10
Match: AT1G21690.1 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 118.6 bits (296), Expect = 1.0e-26
Identity = 76/234 (32.48%), Postives = 114/234 (48.72%), Query Frame = 0


Query: 3   WVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFGPS 62
           WV+KYRPK +  +   ++V + L   +   DCPH+LFYGP G+GK T  +A+  Q+FGP 
Sbjct: 11  WVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGPE 70

Query: 63  AEKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDR--YIVQEIIKEMAKN 122
             K +V                          +EL  SD    DR   +V+  IK+ A  
Sbjct: 71  LYKSRV--------------------------LELNASD----DRGINVVRTKIKDFAAV 130

Query: 123 RPIDSKGKRGHK----GVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTE 182
               +  + G+      +++L++ D ++ +AQ++LRRTME YS   R    CN  SR+ E
Sbjct: 131 AVGSNHRQSGYPCPSFKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 190

Query: 183 AIRSRCLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSSRSLRRAI 231
            + SRC   R    +EE +   +  I  +EGL L     S ++  S   LRRAI
Sbjct: 191 PLASRCAKFRFKPLSEEVMSNRILHICNEEGLSLDGEALSTLSSISQGDLRRAI 214

[Close]

BLAST of Cmc08g0229271 vs. TAIR 10
Match: AT1G21690.3 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 118.6 bits (296), Expect = 1.0e-26
Identity = 76/234 (32.48%), Postives = 114/234 (48.72%), Query Frame = 0


Query: 3   WVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFGPS 62
           WV+KYRPK +  +   ++V + L   +   DCPH+LFYGP G+GK T  +A+  Q+FGP 
Sbjct: 11  WVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGPE 70

Query: 63  AEKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDR--YIVQEIIKEMAKN 122
             K +V                          +EL  SD    DR   +V+  IK+ A  
Sbjct: 71  LYKSRV--------------------------LELNASD----DRGINVVRTKIKDFAAV 130

Query: 123 RPIDSKGKRGHK----GVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTE 182
               +  + G+      +++L++ D ++ +AQ++LRRTME YS   R    CN  SR+ E
Sbjct: 131 AVGSNHRQSGYPCPSFKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 190

Query: 183 AIRSRCLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSSRSLRRAI 231
            + SRC   R    +EE +   +  I  +EGL L     S ++  S   LRRAI
Sbjct: 191 PLASRCAKFRFKPLSEEVMSNRILHICNEEGLSLDGEALSTLSSISQGDLRRAI 214

[Close]

BLAST of Cmc08g0229271 vs. TAIR 10
Match: AT1G21690.4 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 110.5 bits (275), Expect = 2.7e-24
Identity = 73/234 (31.20%), Postives = 110/234 (47.01%), Query Frame = 0


Query: 3   WVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFGPS 62
           WV+KYRPK +  +   ++V + L   +   DCPH+LFYGP G+GK T  +A+  Q+FG  
Sbjct: 11  WVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGV- 70

Query: 63  AEKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDR--YIVQEIIKEMAKN 122
                                           +EL  SD    DR   +V+  IK+ A  
Sbjct: 71  --------------------------------LELNASD----DRGINVVRTKIKDFAAV 130

Query: 123 RPIDSKGKRGHK----GVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTE 182
               +  + G+      +++L++ D ++ +AQ++LRRTME YS   R    CN  SR+ E
Sbjct: 131 AVGSNHRQSGYPCPSFKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 190

Query: 183 AIRSRCLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSSRSLRRAI 231
            + SRC   R    +EE +   +  I  +EGL L     S ++  S   LRRAI
Sbjct: 191 PLASRCAKFRFKPLSEEVMSNRILHICNEEGLSLDGEALSTLSSISQGDLRRAI 207

[Close]

BLAST of Cmc08g0229271 vs. TAIR 10
Match: AT1G21690.2 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 108.2 bits (269), Expect = 1.4e-23
Identity = 77/234 (32.91%), Postives = 112/234 (47.86%), Query Frame = 0


Query: 3   WVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFGPS 62
           WV+KYRPK +      +DVA        E+ CPH+LFYGP G+GK T  +A+  Q+FGP 
Sbjct: 11  WVEKYRPKQV------KDVAH------QEEVCPHMLFYGPPGTGKTTTALAIAHQLFGPE 70

Query: 63  AEKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDR--YIVQEIIKEMAKN 122
             K +V                          +EL  SD    DR   +V+  IK+ A  
Sbjct: 71  LYKSRV--------------------------LELNASD----DRGINVVRTKIKDFAAV 130

Query: 123 RPIDSKGKRGHK----GVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTE 182
               +  + G+      +++L++ D ++ +AQ++LRRTME YS   R    CN  SR+ E
Sbjct: 131 AVGSNHRQSGYPCPSFKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 190

Query: 183 AIRSRCLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSSRSLRRAI 231
            + SRC   R    +EE +   +  I  +EGL L     S ++  S   LRRAI
Sbjct: 191 PLASRCAKFRFKPLSEEVMSNRILHICNEEGLSLDGEALSTLSSISQGDLRRAI 202

The following BLAST results are available for this feature:

BLAST of Cmc08g0229271 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008442036.1	3.0e-198	99.72	PREDICTED: replication factor C subunit 3 [Cucumis melo] >XP_008442037.1 PREDICT...	[more]
XP_004144654.1	1.8e-195	98.03	replication factor C subunit 3 [Cucumis sativus] >KGN54900.1 hypothetical protei...	[more]
XP_022154548.1	7.8e-191	95.77	replication factor C subunit 3 [Momordica charantia] >XP_022154549.1 replication...	[more]
XP_022950838.1	1.3e-190	94.93	replication factor C subunit 3 isoform X2 [Cucurbita moschata]	[more]
XP_022978217.1	6.6e-190	94.37	replication factor C subunit 3 [Cucurbita maxima]	[more]

BLAST of Cmc08g0229271 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VXX4	6.7e-177	85.07	Replication factor C subunit 3 OS=Arabidopsis thaliana OX=3702 GN=RFC3 PE=2 SV=1	[more]
Q852K3	2.0e-168	80.56	Replication factor C subunit 5 OS=Oryza sativa subsp. japonica OX=39947 GN=RFC5 ...	[more]
P40938	2.3e-105	53.87	Replication factor C subunit 3 OS=Homo sapiens OX=9606 GN=RFC3 PE=1 SV=2	[more]
Q2TBV1	6.8e-105	53.58	Replication factor C subunit 3 OS=Bos taurus OX=9913 GN=RFC3 PE=2 SV=1	[more]
Q8R323	6.8e-105	53.58	Replication factor C subunit 3 OS=Mus musculus OX=10090 GN=Rfc3 PE=1 SV=1	[more]

BLAST of Cmc08g0229271 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B4A5	1.4e-198	99.72	replication factor C subunit 3 OS=Cucumis melo OX=3656 GN=LOC103486020 PE=4 SV=1	[more]
A0A5D3C0B6	1.4e-198	99.72	Replication factor C subunit 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A0A0KYY3	8.7e-196	98.03	AAA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G579870 PE=4 SV...	[more]
A0A6J1DMG0	3.8e-191	95.77	replication factor C subunit 3 OS=Momordica charantia OX=3673 GN=LOC111021793 PE...	[more]
A0A6J1GG01	6.5e-191	94.93	replication factor C subunit 3 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]

BLAST of Cmc08g0229271 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27740.1	4.8e-178	85.07	ATPase family associated with various cellular activities (AAA)	[more]
AT1G21690.1	1.0e-26	32.48	ATPase family associated with various cellular activities (AAA)	[more]
AT1G21690.3	1.0e-26	32.48	ATPase family associated with various cellular activities (AAA)	[more]
AT1G21690.4	2.7e-24	31.20	ATPase family associated with various cellular activities (AAA)	[more]
AT1G21690.2	1.4e-23	32.91	ATPase family associated with various cellular activities (AAA)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003593	AAA+ ATPase domain	SMART	SM00382	AAA_5	coord: 33..193 e-value: 5.4E-6 score: 35.9
None	No IPR available	GENE3D	1.10.8.60		coord: 191..244 e-value: 4.3E-13 score: 50.6
None	No IPR available	GENE3D	1.20.272.10		coord: 253..346 e-value: 2.9E-39 score: 135.2
None	No IPR available	PFAM	PF13177	DNA_pol3_delta2	coord: 18..188 e-value: 1.5E-13 score: 51.1
None	No IPR available	PANTHER	PTHR11669	REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT	coord: 2..347
None	No IPR available	PANTHER	PTHR11669:SF1	REPLICATION FACTOR C SUBUNIT 3	coord: 2..347
None	No IPR available	CDD	cd00009	AAA	coord: 19..182 e-value: 1.70658E-9 score: 54.0743
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 1..190 e-value: 7.4E-54 score: 184.7
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 3..240
IPR008921	DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal	SUPERFAMILY	48019	post-AAA+ oligomerization domain-like	coord: 252..347

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0229271.1	Cmc08g0229271.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006261	DNA-dependent DNA replication
biological_process	GO:0006281	DNA repair
biological_process	GO:0006260	DNA replication
cellular_component	GO:0005663	DNA replication factor C complex
cellular_component	GO:0016020	membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003689	DNA clamp loader activity