Cmc08g0228471 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0228471
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1
Location	CMiso1.1chr08: 22712429 .. 22713004 (+)
RNA-Seq Expression	Cmc08g0228471
Synteny	Cmc08g0228471

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATCAAACTTCAACTTGTAGACAATTAGCTGCAGATCGACTTGTGAAACTCTTAATGTTATCAAGAGTTAATAAAGTAACTGTAAGTGTCGTTGATCAATTGAAATGGGACTTGGGTCTTCCTAAAGATTATGTTCAAAGTATAGTTCCTGATTTTCCAGATTACTTCAAAGTTGTAGGACATCAAAATTTTGCATCTGGATTAGGTGATACGCGGGTATTGGAATTGGTATGTTGGAACAATGAATTGACCACTTCAGTTGTAGAGAAGATGGCTGCAAAAGTAAAGTTTGATACATATAAAGGAATGCATATTACTTTTCCTATGAAATACTCGAACGGTTTTGAGATGGATAAGTTCAAGAAATGGGTGGATGAGTGGCAAAAGCTACCTTACATCTCTCCCTATGAAAATGCATCACATCTTTCTCCTAATAATGATGAATCTGAAAAGTGGACTGTTGCGATTTTACATGAGCTTCTTCATATGCTTGTCACGAAGAAGACTGAGAAGGAAAATATATTGTGTATAGGTGAGTATTTTGGTTTAAGAGAGCATTGCTTCACCATCTAG

mRNA sequence

ATGTATCAAACTTCAACTTGTAGACAATTAGCTGCAGATCGACTTGTGAAACTCTTAATGTTATCAAGAGTTAATAAAGTAACTGTAAGTGTCGTTGATCAATTGAAATGGGACTTGGGTCTTCCTAAAGATTATGTTCAAAGTATAGTTCCTGATTTTCCAGATTACTTCAAAGTTGTAGGACATCAAAATTTTGCATCTGGATTAGGTGATACGCGGGTATTGGAATTGGTATGTTGGAACAATGAATTGACCACTTCAGTTGTAGAGAAGATGGCTGCAAAAGTAAAGTTTGATACATATAAAGGAATGCATATTACTTTTCCTATGAAATACTCGAACGGTTTTGAGATGGATAAGTTCAAGAAATGGGTGGATGAGTGGCAAAAGCTACCTTACATCTCTCCCTATGAAAATGCATCACATCTTTCTCCTAATAATGATGAATCTGAAAAGTGGACTGTTGCGATTTTACATGAGCTTCTTCATATGCTTGTCACGAAGAAGACTGAGAAGGAAAATATATTGTGTATAGGTGAGTATTTTGGTTTAAGAGAGCATTGCTTCACCATCTAG

Coding sequence (CDS)

ATGTATCAAACTTCAACTTGTAGACAATTAGCTGCAGATCGACTTGTGAAACTCTTAATGTTATCAAGAGTTAATAAAGTAACTGTAAGTGTCGTTGATCAATTGAAATGGGACTTGGGTCTTCCTAAAGATTATGTTCAAAGTATAGTTCCTGATTTTCCAGATTACTTCAAAGTTGTAGGACATCAAAATTTTGCATCTGGATTAGGTGATACGCGGGTATTGGAATTGGTATGTTGGAACAATGAATTGACCACTTCAGTTGTAGAGAAGATGGCTGCAAAAGTAAAGTTTGATACATATAAAGGAATGCATATTACTTTTCCTATGAAATACTCGAACGGTTTTGAGATGGATAAGTTCAAGAAATGGGTGGATGAGTGGCAAAAGCTACCTTACATCTCTCCCTATGAAAATGCATCACATCTTTCTCCTAATAATGATGAATCTGAAAAGTGGACTGTTGCGATTTTACATGAGCTTCTTCATATGCTTGTCACGAAGAAGACTGAGAAGGAAAATATATTGTGTATAGGTGAGTATTTTGGTTTAAGAGAGCATTGCTTCACCATCTAG

Protein sequence

MYQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDTYKGMHITFPMKYSNGFEMDKFKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIGEYFGLREHCFTI

Homology

[Close]

BLAST of Cmc08g0228471 vs. NCBI nr
Match: KAA0034927.1 (protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 370.5 bits (950), Expect = 8.4e-99
Identity = 179/181 (98.90%), Postives = 179/181 (98.90%), Query Frame = 0


Query: 1   MYQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVV 60
           MYQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVV
Sbjct: 137 MYQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVV 196

Query: 61  GHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDTYKGMHITFPMKYSNGFEMDK 120
           GHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDTYKGMHITFPMKYSNGFEMDK
Sbjct: 197 GHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDTYKGMHITFPMKYSNGFEMDK 256

Query: 121 FKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIGE 180
           FKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCI  
Sbjct: 257 FKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIEG 316

Query: 181 Y 182
           Y
Sbjct: 317 Y 317

[Close]

BLAST of Cmc08g0228471 vs. NCBI nr
Match: TYK05469.1 (protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 367.5 bits (942), Expect = 7.2e-98
Identity = 177/181 (97.79%), Postives = 179/181 (98.90%), Query Frame = 0


Query: 1   MYQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVV 60
           MYQTSTCRQLAADRLVKLLMLSRVNKVTV+VVDQLKWDLGLPKDYVQSIVP+FPDYFKVV
Sbjct: 137 MYQTSTCRQLAADRLVKLLMLSRVNKVTVNVVDQLKWDLGLPKDYVQSIVPNFPDYFKVV 196

Query: 61  GHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDTYKGMHITFPMKYSNGFEMDK 120
           GHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDTYKGMHITFPMKYSNGFEMDK
Sbjct: 197 GHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDTYKGMHITFPMKYSNGFEMDK 256

Query: 121 FKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIGE 180
           FKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCI  
Sbjct: 257 FKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIEG 316

Query: 181 Y 182
           Y
Sbjct: 317 Y 317

[Close]

BLAST of Cmc08g0228471 vs. NCBI nr
Match: TYK12080.1 (protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 347.1 bits (889), Expect = 1.0e-91
Identity = 167/185 (90.27%), Postives = 176/185 (95.14%), Query Frame = 0


Query: 2   YQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVG 61
           YQTSTCRQ AADRL+KLLMLSRV+KV VS++DQLKWDLGLPKD+VQSIVP+FPDYFKVVG
Sbjct: 130 YQTSTCRQQAADRLLKLLMLSRVHKVPVSIIDQLKWDLGLPKDFVQSIVPEFPDYFKVVG 189

Query: 62  HQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDTYKGMHITFPMKYSNGFEMD-K 121
           HQNFASG GD RVLELVCWNNEL TSV+EKMAAKVK DT K MHITFPMKYSNGFEMD K
Sbjct: 190 HQNFASGSGDMRVLELVCWNNELATSVLEKMAAKVKHDTSKRMHITFPMKYSNGFEMDKK 249

Query: 122 FKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIGE 181
           FKKWVDEWQKLPYISPYENASHLSPN+DES+KWTVAILHELLHMLVTKKTEKENILCIGE
Sbjct: 250 FKKWVDEWQKLPYISPYENASHLSPNSDESDKWTVAILHELLHMLVTKKTEKENILCIGE 309

Query: 182 YFGLR 186
           YFGLR
Sbjct: 310 YFGLR 314

[Close]

BLAST of Cmc08g0228471 vs. NCBI nr
Match: KAA0056510.1 (protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 347.1 bits (889), Expect = 1.0e-91
Identity = 167/185 (90.27%), Postives = 176/185 (95.14%), Query Frame = 0


Query: 2   YQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVG 61
           YQTSTCRQ AADRL+KLLMLSRV+KV VS++DQLKWDLGLPKD+VQSIVP+FPDYFKVVG
Sbjct: 130 YQTSTCRQQAADRLLKLLMLSRVHKVPVSIIDQLKWDLGLPKDFVQSIVPEFPDYFKVVG 189

Query: 62  HQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDTYKGMHITFPMKYSNGFEMD-K 121
           HQNFASG GD RVLELVCWNNEL TSV+EKMAAKVK DT K MHITFPMKYSNGFEMD K
Sbjct: 190 HQNFASGSGDMRVLELVCWNNELATSVLEKMAAKVKHDTSKRMHITFPMKYSNGFEMDKK 249

Query: 122 FKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIGE 181
           FKKWVDEWQKLPYISPYENASHLSPN+DES+KWTVAILHELLHMLVTKKTEKENILCIGE
Sbjct: 250 FKKWVDEWQKLPYISPYENASHLSPNSDESDKWTVAILHELLHMLVTKKTEKENILCIGE 309

Query: 182 YFGLR 186
           YFGLR
Sbjct: 310 YFGLR 314

[Close]

BLAST of Cmc08g0228471 vs. NCBI nr
Match: XP_031741647.1 (protein WHAT'S THIS FACTOR 9, mitochondrial, partial [Cucumis sativus])

HSP 1 Score: 346.7 bits (888), Expect = 1.3e-91
Identity = 167/185 (90.27%), Postives = 175/185 (94.59%), Query Frame = 0


Query: 2   YQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVG 61
           YQTSTCRQ AADRLVKLLMLSRV+KV VS++DQLKWDLGLPKDYV+SIVPDFPDYFKVVG
Sbjct: 171 YQTSTCRQQAADRLVKLLMLSRVHKVPVSIIDQLKWDLGLPKDYVESIVPDFPDYFKVVG 230

Query: 62  HQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDTYKGMHITFPMKYSNGFEMD-K 121
           HQNFASG GD RVLELVCWNNEL TSV+EKMA KVK D  KGM+ITFPMKYSNGFEMD K
Sbjct: 231 HQNFASGSGDMRVLELVCWNNELATSVIEKMAVKVKPDKSKGMYITFPMKYSNGFEMDKK 290

Query: 122 FKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIGE 181
           FKKWVDEWQKLPYISPYENASHLSPN+DES+KWTVAILHELLHMLVTKKTEKENILCIGE
Sbjct: 291 FKKWVDEWQKLPYISPYENASHLSPNSDESDKWTVAILHELLHMLVTKKTEKENILCIGE 350

Query: 182 YFGLR 186
           YFGLR
Sbjct: 351 YFGLR 355

[Close]

BLAST of Cmc08g0228471 vs. ExPASy Swiss-Prot
Match: Q9ZUZ6 (Protein WHAT'S THIS FACTOR 9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=WTF9 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 6.0e-23
Identity = 68/186 (36.56%), Postives = 105/186 (56.45%), Query Frame = 0


Query: 1   MYQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVV 60
           +YQTS       DRL KL+++S+ N + +S+V  +KW LGLP DY+Q    +    F+ V
Sbjct: 125 VYQTSA--DDLRDRLKKLILMSKDNVLPLSIVQGMKWYLGLPDDYLQFPDMNLDSSFRFV 184

Query: 61  GHQNFASGLGDTRVLELVCWN-NELTTSVVEKMAAKVKFDTYKGMHITFPMKYSNGFEMD 120
             ++   GL        V +N  +   SV++K A K +        I FP+  S G  + 
Sbjct: 185 DMEDGVKGLA-------VDYNGGDKVLSVLQKNAMKKRRGEVSLEEIEFPLFPSKGCRLR 244

Query: 121 -KFKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCI 180
            K + W+ E+QKLPY+SPY++ S L P++D +EK  V  LHELL + V    E++ +LC+
Sbjct: 245 VKIEDWLMEFQKLPYVSPYDDYSCLDPSSDIAEKRVVGFLHELLCLFVEHSAERKKLLCL 301

Query: 181 GEYFGL 185
            ++FGL
Sbjct: 305 KKHFGL 301

[Close]

BLAST of Cmc08g0228471 vs. ExPASy Swiss-Prot
Match: B6TTV8 (Protein WHAT'S THIS FACTOR 1, chloroplastic OS=Zea mays OX=4577 GN=WTF1 PE=1 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.2e-16
Identity = 54/181 (29.83%), Postives = 97/181 (53.59%), Query Frame = 0


Query: 10  LAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGL 69
           LA  +L KLLM+S+  ++ +  V  LK DLGLP ++  ++   +P YF+VV        +
Sbjct: 157 LAVAKLRKLLMMSQEKRILIEKVAHLKHDLGLPPEFRDTVCLRYPQYFRVV-------RM 216

Query: 70  GDTRVLELVCWNNELTTSVVE--KMAAKVKFDTYKGMHITFPMKYS-----NGFEMDKFK 129
                LEL  W+ EL  S  E  +  ++ +    + + I  P+K++      G ++ + +
Sbjct: 217 DRGPALELTHWDPELAVSAAELAEEESRAREAEERNLIIDRPLKFNRVRLPKGLKLTRGE 276

Query: 130 -KWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIGEY 183
            + +  ++++PYISPY + SHL   +DE EK    ++HE+L + V K+T  +++    E 
Sbjct: 277 ARRIARFKEMPYISPYADFSHLRSGSDEKEKHACGVVHEILSLTVEKRTLVDHLTHFREE 330

[Close]

BLAST of Cmc08g0228471 vs. ExPASy Swiss-Prot
Match: Q65XL5 (Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0571100 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.6e-15
Identity = 55/181 (30.39%), Postives = 98/181 (54.14%), Query Frame = 0


Query: 10  LAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGL 69
           LA  +L KLLM+S+  ++ +  +  LK DLGLP ++  +I   +P YF+VV       G 
Sbjct: 163 LAVTKLRKLLMMSQDKRILIEKIAHLKNDLGLPPEFRDTICLRYPQYFRVV---QMDRGP 222

Query: 70  GDTRVLELVCWNNELTTSVVE--KMAAKVKFDTYKGMHITFPMKYS-----NGFEMDKFK 129
           G    LEL  W+ EL  S  E  +   + + +  + + I  P+K++      G ++ + +
Sbjct: 223 G----LELTHWDPELAVSAAEVAEEENRAREEQERNLIIDRPLKFNRVKLPQGLKLSRGE 282

Query: 130 -KWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIGEY 183
            + V +++++PYISPY + SHL   + E EK    ++HE+L + + K+T  +++    E 
Sbjct: 283 ARRVAQFKEMPYISPYSDFSHLRSGSAEKEKHACGVVHEILSLTLEKRTLVDHLTHFREE 336

[Close]

BLAST of Cmc08g0228471 vs. ExPASy Swiss-Prot
Match: Q689D6 (Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana OX=3702 GN=RPD1 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.6e-12
Identity = 50/173 (28.90%), Postives = 91/173 (52.60%), Query Frame = 0


Query: 11  AADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLG 70
           A  RL KL+M+S   ++ +  V   + + GLP+D+  S++   P +F+++  +       
Sbjct: 149 AVTRLRKLVMMSNTGRIRLEHVRIARTEFGLPEDFEYSVILKHPQFFRLIDGEETRD--- 208

Query: 71  DTRVLELVCWNNELTTSVVEKMAA---KVKFDTYKGMHITFPMKYSNGFEMDK-FKKWVD 130
             + +E+V  +  L+   +E++     + K    + +  +F + +  GF++ K F+  V 
Sbjct: 209 --KYIEIVEKDPNLSICAIERVREIEYRTKGIDAEDVRFSFVVNFPPGFKIGKYFRIAVW 268

Query: 131 EWQKLPYISPYENASHLSPNNDES----EKWTVAILHELLHMLVTKKTEKENI 176
           +WQ+LPY SPYE+ S     + E+    EK +VA +HELL + V KK   E I
Sbjct: 269 KWQRLPYWSPYEDISGYDLRSMEAQNRLEKRSVACIHELLSLTVEKKITLERI 316

[Close]

BLAST of Cmc08g0228471 vs. ExPASy Swiss-Prot
Match: A0MFS5 (Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g01037 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.8e-12
Identity = 50/177 (28.25%), Postives = 88/177 (49.72%), Query Frame = 0


Query: 14  RLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTR 73
           +L KL+M+S   ++ +  +  LK DLGLP ++  +I   +P YF+VV      +      
Sbjct: 182 KLRKLVMMSIDKRILLEKISHLKTDLGLPLEFRDTICQRYPQYFRVVPTPRGPA------ 241

Query: 74  VLELVCWNNELTTSVVE--KMAAKVKFDTYKGMHITFPMKYS-----NGFEMDKFK-KWV 133
            LEL  W+ EL  S  E  +   + +    + + I  P K++      G  + K + + +
Sbjct: 242 -LELTHWDPELAVSAAELSEDDNRTRESEERNLIIDRPPKFNRVKLPRGLNLSKSETRKI 301

Query: 134 DEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIGEYF 183
            +++ + YISPY++ SHL     E EK    ++HELL +   K+T  +++    E F
Sbjct: 302 SQFRDMQYISPYKDFSHLRSGTLEKEKHACGVIHELLSLTTEKRTLVDHLTHFREEF 351

[Close]

BLAST of Cmc08g0228471 vs. ExPASy TrEMBL
Match: A0A5A7T026 (Protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold103G00590 PE=4 SV=1)

HSP 1 Score: 370.5 bits (950), Expect = 4.1e-99
Identity = 179/181 (98.90%), Postives = 179/181 (98.90%), Query Frame = 0


Query: 1   MYQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVV 60
           MYQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVV
Sbjct: 137 MYQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVV 196

Query: 61  GHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDTYKGMHITFPMKYSNGFEMDK 120
           GHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDTYKGMHITFPMKYSNGFEMDK
Sbjct: 197 GHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDTYKGMHITFPMKYSNGFEMDK 256

Query: 121 FKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIGE 180
           FKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCI  
Sbjct: 257 FKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIEG 316

Query: 181 Y 182
           Y
Sbjct: 317 Y 317

[Close]

BLAST of Cmc08g0228471 vs. ExPASy TrEMBL
Match: A0A5D3C507 (Protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83G001750 PE=4 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 3.5e-98
Identity = 177/181 (97.79%), Postives = 179/181 (98.90%), Query Frame = 0


Query: 1   MYQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVV 60
           MYQTSTCRQLAADRLVKLLMLSRVNKVTV+VVDQLKWDLGLPKDYVQSIVP+FPDYFKVV
Sbjct: 137 MYQTSTCRQLAADRLVKLLMLSRVNKVTVNVVDQLKWDLGLPKDYVQSIVPNFPDYFKVV 196

Query: 61  GHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDTYKGMHITFPMKYSNGFEMDK 120
           GHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDTYKGMHITFPMKYSNGFEMDK
Sbjct: 197 GHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDTYKGMHITFPMKYSNGFEMDK 256

Query: 121 FKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIGE 180
           FKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCI  
Sbjct: 257 FKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIEG 316

Query: 181 Y 182
           Y
Sbjct: 317 Y 317

[Close]

BLAST of Cmc08g0228471 vs. ExPASy TrEMBL
Match: A0A5D3CKY8 (Protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00040 PE=4 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 4.8e-92
Identity = 167/185 (90.27%), Postives = 176/185 (95.14%), Query Frame = 0


Query: 2   YQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVG 61
           YQTSTCRQ AADRL+KLLMLSRV+KV VS++DQLKWDLGLPKD+VQSIVP+FPDYFKVVG
Sbjct: 130 YQTSTCRQQAADRLLKLLMLSRVHKVPVSIIDQLKWDLGLPKDFVQSIVPEFPDYFKVVG 189

Query: 62  HQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDTYKGMHITFPMKYSNGFEMD-K 121
           HQNFASG GD RVLELVCWNNEL TSV+EKMAAKVK DT K MHITFPMKYSNGFEMD K
Sbjct: 190 HQNFASGSGDMRVLELVCWNNELATSVLEKMAAKVKHDTSKRMHITFPMKYSNGFEMDKK 249

Query: 122 FKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIGE 181
           FKKWVDEWQKLPYISPYENASHLSPN+DES+KWTVAILHELLHMLVTKKTEKENILCIGE
Sbjct: 250 FKKWVDEWQKLPYISPYENASHLSPNSDESDKWTVAILHELLHMLVTKKTEKENILCIGE 309

Query: 182 YFGLR 186
           YFGLR
Sbjct: 310 YFGLR 314

[Close]

BLAST of Cmc08g0228471 vs. ExPASy TrEMBL
Match: A0A5A7UN72 (Protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G00040 PE=4 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 4.8e-92
Identity = 167/185 (90.27%), Postives = 176/185 (95.14%), Query Frame = 0


Query: 2   YQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVG 61
           YQTSTCRQ AADRL+KLLMLSRV+KV VS++DQLKWDLGLPKD+VQSIVP+FPDYFKVVG
Sbjct: 130 YQTSTCRQQAADRLLKLLMLSRVHKVPVSIIDQLKWDLGLPKDFVQSIVPEFPDYFKVVG 189

Query: 62  HQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDTYKGMHITFPMKYSNGFEMD-K 121
           HQNFASG GD RVLELVCWNNEL TSV+EKMAAKVK DT K MHITFPMKYSNGFEMD K
Sbjct: 190 HQNFASGSGDMRVLELVCWNNELATSVLEKMAAKVKHDTSKRMHITFPMKYSNGFEMDKK 249

Query: 122 FKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIGE 181
           FKKWVDEWQKLPYISPYENASHLSPN+DES+KWTVAILHELLHMLVTKKTEKENILCIGE
Sbjct: 250 FKKWVDEWQKLPYISPYENASHLSPNSDESDKWTVAILHELLHMLVTKKTEKENILCIGE 309

Query: 182 YFGLR 186
           YFGLR
Sbjct: 310 YFGLR 314

[Close]

BLAST of Cmc08g0228471 vs. ExPASy TrEMBL
Match: A0A0A0KRP2 (PORR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G420350 PE=4 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 6.3e-92
Identity = 167/185 (90.27%), Postives = 175/185 (94.59%), Query Frame = 0


Query: 2   YQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVG 61
           YQTSTCRQ AADRLVKLLMLSRV+KV VS++DQLKWDLGLPKDYV+SIVPDFPDYFKVVG
Sbjct: 130 YQTSTCRQQAADRLVKLLMLSRVHKVPVSIIDQLKWDLGLPKDYVESIVPDFPDYFKVVG 189

Query: 62  HQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDTYKGMHITFPMKYSNGFEMD-K 121
           HQNFASG GD RVLELVCWNNEL TSV+EKMA KVK D  KGM+ITFPMKYSNGFEMD K
Sbjct: 190 HQNFASGSGDMRVLELVCWNNELATSVIEKMAVKVKPDKSKGMYITFPMKYSNGFEMDKK 249

Query: 122 FKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIGE 181
           FKKWVDEWQKLPYISPYENASHLSPN+DES+KWTVAILHELLHMLVTKKTEKENILCIGE
Sbjct: 250 FKKWVDEWQKLPYISPYENASHLSPNSDESDKWTVAILHELLHMLVTKKTEKENILCIGE 309

Query: 182 YFGLR 186
           YFGLR
Sbjct: 310 YFGLR 314

[Close]

BLAST of Cmc08g0228471 vs. TAIR 10
Match: AT1G71850.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 217.2 bits (552), Expect = 1.1e-56
Identity = 104/187 (55.61%), Postives = 142/187 (75.94%), Query Frame = 0


Query: 1   MYQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVV 60
           +Y + T +Q  ADRL+KLLM++R+NK+ + ++D LKWDLGLPKDYV+++VP+FPDYF+V+
Sbjct: 124 VYGSETYKQGLADRLLKLLMINRINKIPLEILDLLKWDLGLPKDYVETMVPEFPDYFRVI 183

Query: 61  GHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDTY-KGMHITFPMKYSNGFEMD 120
                +   G +  LELVCW+NE   SV+EK A  ++   Y KG  I FPMK+SNGF +D
Sbjct: 184 K----SKLRGCSGELELVCWSNEHAVSVLEKKARTLRKGEYTKGSAIAFPMKFSNGFVVD 243

Query: 121 -KFKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCI 180
            K KKW+D+WQKLPYISPYENA HLS  +DES+KW  A+LHE++++ V+KK EK+ IL +
Sbjct: 244 KKMKKWIDDWQKLPYISPYENALHLSATSDESDKWAAAVLHEIMNLFVSKKVEKDAILHL 303

Query: 181 GEYFGLR 186
           GE+ GLR
Sbjct: 304 GEFMGLR 306

[Close]

BLAST of Cmc08g0228471 vs. TAIR 10
Match: AT4G24320.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 160.2 bits (404), Expect = 1.6e-39
Identity = 77/178 (43.26%), Postives = 116/178 (65.17%), Query Frame = 0


Query: 8   RQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFAS 67
           R +   RL K LML+    + + V+D+ ++DLGLP+DY+ S++ D+P+YF+V   ++  +
Sbjct: 124 RNVTVQRLTKFLMLTGAGSLPLYVLDRFRFDLGLPRDYITSLIGDYPEYFEVTEIKDRLT 183

Query: 68  GLGDTRVLELVCWNNELTTSVVEKMAAKVKFD-TYKGMHITFPMKYSNGFEMDK-FKKWV 127
           G   T  L +    N L  S +E+  A +      KG+ I + M +  G+E+ K  K WV
Sbjct: 184 G-EKTLALTISSRRNNLPVSEMERREATIDGSRVKKGLRIRYSMNFPKGYELHKRVKNWV 243

Query: 128 DEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIGEYFG 184
           ++WQ LPYISPYENA HL   +D++EKW VA+LHELL +LV+KKTE +N++C+GEY G
Sbjct: 244 EQWQNLPYISPYENAFHLGSYSDQAEKWAVAVLHELLFLLVSKKTETDNVICLGEYLG 300

[Close]

BLAST of Cmc08g0228471 vs. TAIR 10
Match: AT5G48040.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 126.7 bits (317), Expect = 2.0e-29
Identity = 67/172 (38.95%), Postives = 101/172 (58.72%), Query Frame = 0


Query: 14  RLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTR 73
           RL KLLML+    +++  +D L+WDLGLP DY  S++   PD F +V   +   G     
Sbjct: 147 RLCKLLMLTCERTLSLHSIDHLRWDLGLPYDYRDSLITKHPDLFSLVKLSSDLDG----- 206

Query: 74  VLELVCWNNELTTSVVEKMAAKVKFDTYKGMHITFPMKYSNGFEMD-KFKKWVDEWQKLP 133
            L+L+ W+  L  S ++     ++ D      + FP+K++ GF +  K  +W+ EWQ+LP
Sbjct: 207 -LKLIHWDEHLAVSQMQ-----LREDVGNDERMAFPVKFTRGFGLKRKSIEWLQEWQRLP 266

Query: 134 YISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIGEYFGL 185
           Y SPY +ASHL P  D SEK  V + HELLH+ + KKTE++N+  + + F L
Sbjct: 267 YTSPYVDASHLDPRTDLSEKRNVGVFHELLHLTIGKKTERKNVSNLRKPFAL 307

[Close]

BLAST of Cmc08g0228471 vs. TAIR 10
Match: AT3G58520.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 109.8 bits (273), Expect = 2.5e-24
Identity = 62/170 (36.47%), Postives = 99/170 (58.24%), Query Frame = 0


Query: 13  DRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDT 72
           +RL ++LM+ R   V++  +  LK+DLGLP +Y +++V  +PD+F  V   N        
Sbjct: 138 ERLCRVLMMMRSKTVSLRSLHSLKFDLGLPDNYEKTLVMKYPDHFCFVKASN------GN 197

Query: 73  RVLELVCWNNELTTSVVEK-------MAAKVKFDTYK--GMHITFPMKYSNGF-EMDKFK 132
             L+LV W +E   S ++K          + ++  +K     +TFPM +  G+    K K
Sbjct: 198 PCLKLVKWRDEFAFSALQKRNEDNDVSGEESRYREFKRGQSTLTFPMSFPRGYGAQKKVK 257

Query: 133 KWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEK 173
            W+DE+QKLPYISPY++ S++ P +D  EK  VA+LHELL + + KKT++
Sbjct: 258 AWMDEFQKLPYISPYDDPSNIDPESDLMEKRAVAVLHELLSLTIHKKTKR 301

[Close]

BLAST of Cmc08g0228471 vs. TAIR 10
Match: AT3G58520.2 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 109.8 bits (273), Expect = 2.5e-24
Identity = 62/170 (36.47%), Postives = 99/170 (58.24%), Query Frame = 0


Query: 13  DRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDT 72
           +RL ++LM+ R   V++  +  LK+DLGLP +Y +++V  +PD+F  V   N        
Sbjct: 126 ERLCRVLMMMRSKTVSLRSLHSLKFDLGLPDNYEKTLVMKYPDHFCFVKASN------GN 185

Query: 73  RVLELVCWNNELTTSVVEK-------MAAKVKFDTYK--GMHITFPMKYSNGF-EMDKFK 132
             L+LV W +E   S ++K          + ++  +K     +TFPM +  G+    K K
Sbjct: 186 PCLKLVKWRDEFAFSALQKRNEDNDVSGEESRYREFKRGQSTLTFPMSFPRGYGAQKKVK 245

Query: 133 KWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEK 173
            W+DE+QKLPYISPY++ S++ P +D  EK  VA+LHELL + + KKT++
Sbjct: 246 AWMDEFQKLPYISPYDDPSNIDPESDLMEKRAVAVLHELLSLTIHKKTKR 289

The following BLAST results are available for this feature:

BLAST of Cmc08g0228471 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0034927.1	8.4e-99	98.90	protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 [Cucumis melo var. makuwa]	[more]
TYK05469.1	7.2e-98	97.79	protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 [Cucumis melo var. makuwa]	[more]
TYK12080.1	1.0e-91	90.27	protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 [Cucumis melo var. makuwa]	[more]
KAA0056510.1	1.0e-91	90.27	protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 [Cucumis melo var. makuwa]	[more]
XP_031741647.1	1.3e-91	90.27	protein WHAT'S THIS FACTOR 9, mitochondrial, partial [Cucumis sativus]	[more]

BLAST of Cmc08g0228471 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZUZ6	6.0e-23	36.56	Protein WHAT'S THIS FACTOR 9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=W...	[more]
B6TTV8	4.2e-16	29.83	Protein WHAT'S THIS FACTOR 1, chloroplastic OS=Zea mays OX=4577 GN=WTF1 PE=1 SV=...	[more]
Q65XL5	1.6e-15	30.39	Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Oryza sativa subsp. japon...	[more]
Q689D6	1.6e-12	28.90	Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana OX=3702 GN=RPD1 PE=1...	[more]
A0MFS5	2.8e-12	28.25	Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]

BLAST of Cmc08g0228471 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T026	4.1e-99	98.90	Protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 OS=Cucumis melo var. makuwa OX=11...	[more]
A0A5D3C507	3.5e-98	97.79	Protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 OS=Cucumis melo var. makuwa OX=11...	[more]
A0A5D3CKY8	4.8e-92	90.27	Protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 OS=Cucumis melo var. makuwa OX=11...	[more]
A0A5A7UN72	4.8e-92	90.27	Protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 OS=Cucumis melo var. makuwa OX=11...	[more]
A0A0A0KRP2	6.3e-92	90.27	PORR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G420350 PE=4 S...	[more]

BLAST of Cmc08g0228471 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G71850.1	1.1e-56	55.61	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT4G24320.1	1.6e-39	43.26	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT5G48040.1	2.0e-29	38.95	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT3G58520.1	2.5e-24	36.47	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT3G58520.2	2.5e-24	36.47	Ubiquitin carboxyl-terminal hydrolase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021099	Plant organelle RNA recognition domain	PFAM	PF11955	PORR	coord: 6..187 e-value: 2.8E-61 score: 207.3
None	No IPR available	PANTHER	PTHR31476:SF16	F14O23.23 PROTEIN	coord: 1..186
IPR045040	PORR family	PANTHER	PTHR31476	PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC	coord: 1..186

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0228471.1	Cmc08g0228471.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
molecular_function	GO:0003723	RNA binding