Cmc08g0228451 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0228451
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr08: 22707769 .. 22708776 (+)
RNA-Seq Expression	Cmc08g0228451
Synteny	Cmc08g0228451

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTGGAAGTAAATCAATGTTCGTGGAGTTTGATGAATTTGTTGGTGGTGATATCGTATTTGGTGATGCCACAAAAATTCCAGTTAAAGGAAAAGGTAAAATGTTGATCAATTTGAAGAATGGGAAGCATGAGTTTATCGCTAATGTTTATAATGTGCCTAATATGAAGAACAACATTTTGAGTTTGGGACAACTCTTAGAGAAAGGCTATAGTATTTTGATGAAGGATTATAGTCTTTTGATAAGAGATAATCATGACAAAATAATTGCTAAAGTGCAAATGGCGAAAAATAGAATGTTTTTATTAAACATTCAAACTAATGTTGCTAAATGTTTAAAGTTATGTTTGAAAGATCCCAATTGGATTTGGCACTTGAGATTCGGGCATTTGAACTTTGATAGCTTGAGATTATTAGCCAGGAAGGACATGGTGAAAGGGTTACCATATGTCAAACATCCAGATCAACTTTGTGAAGGTTATCTTCATGGCAAACAATCAAGGAAGAGTTTTCCACAAGAATCATCTTCGAGAGCAAAGAGACCAGTGGAGTTAGTTCACACCGATCTTTGTGGACTAATCAAACCAAGTTCTTTTGGTAAGAATAACTATTTCTTATTATTTATTGATGCTTTCACCCGAAAAACTTGGGTTTACTTTGTCAAGGAGAAATCAGAAGTATTTGACATGTTTAAGAGATTTAAAGCTCTTGTTGAAAAAGAAAGTGGTTATTACATTGCTTTGAGATCAGATAGGGGAGGTGAATTCACTTCAAATGAATTCAAAACTTTTTACACAGAAAATAAAATTCGTCGATCTATGACAGTTCCATTTACTCCTCAACAAAATGGTGTTGTTGAAAGGAAGAACCGAACAATAATTAACATGGCTCAAAATATGTTAAAGTGCAAGAAGATGCCAAAAGAATTTTGGGCACAGGTTGTTGAATGTGCAGTGTACTTGTCAAATCGTTCCCCTACTAGAAGCTTATGGAACAAAAGTCCTTAA

mRNA sequence

ATGTGTGGAAGTAAATCAATGTTCGTGGAGTTTGATGAATTTGTTGGTGGTGATATCGTATTTGGTGATGCCACAAAAATTCCAGTTAAAGGAAAAGGTAAAATGTTGATCAATTTGAAGAATGGGAAGCATGAGTTTATCGCTAATGTTTATAATGTGCCTAATATGAAGAACAACATTTTGAGTTTGGGACAACTCTTAGAGAAAGGCTATAGTATTTTGATGAAGGATTATAGTCTTTTGATAAGAGATAATCATGACAAAATAATTGCTAAAGTGCAAATGGCGAAAAATAGAATGTTTTTATTAAACATTCAAACTAATGTTGCTAAATGTTTAAAGTTATGTTTGAAAGATCCCAATTGGATTTGGCACTTGAGATTCGGGCATTTGAACTTTGATAGCTTGAGATTATTAGCCAGGAAGGACATGGTGAAAGGGTTACCATATGTCAAACATCCAGATCAACTTTGTGAAGGTTATCTTCATGGCAAACAATCAAGGAAGAGTTTTCCACAAGAATCATCTTCGAGAGCAAAGAGACCAGTGGAGTTAGTTCACACCGATCTTTGTGGACTAATCAAACCAAGTTCTTTTGGTAAGAATAACTATTTCTTATTATTTATTGATGCTTTCACCCGAAAAACTTGGGTTTACTTTGTCAAGGAGAAATCAGAAGTATTTGACATGTTTAAGAGATTTAAAGCTCTTGTTGAAAAAGAAAGTGGTTATTACATTGCTTTGAGATCAGATAGGGGAGGTGAATTCACTTCAAATGAATTCAAAACTTTTTACACAGAAAATAAAATTCGTCGATCTATGACAGTTCCATTTACTCCTCAACAAAATGGTGTTGTTGAAAGGAAGAACCGAACAATAATTAACATGGCTCAAAATATGTTAAAGTGCAAGAAGATGCCAAAAGAATTTTGGGCACAGGTTGTTGAATGTGCAGTGTACTTGTCAAATCGTTCCCCTACTAGAAGCTTATGGAACAAAAGTCCTTAA

Coding sequence (CDS)

ATGTGTGGAAGTAAATCAATGTTCGTGGAGTTTGATGAATTTGTTGGTGGTGATATCGTATTTGGTGATGCCACAAAAATTCCAGTTAAAGGAAAAGGTAAAATGTTGATCAATTTGAAGAATGGGAAGCATGAGTTTATCGCTAATGTTTATAATGTGCCTAATATGAAGAACAACATTTTGAGTTTGGGACAACTCTTAGAGAAAGGCTATAGTATTTTGATGAAGGATTATAGTCTTTTGATAAGAGATAATCATGACAAAATAATTGCTAAAGTGCAAATGGCGAAAAATAGAATGTTTTTATTAAACATTCAAACTAATGTTGCTAAATGTTTAAAGTTATGTTTGAAAGATCCCAATTGGATTTGGCACTTGAGATTCGGGCATTTGAACTTTGATAGCTTGAGATTATTAGCCAGGAAGGACATGGTGAAAGGGTTACCATATGTCAAACATCCAGATCAACTTTGTGAAGGTTATCTTCATGGCAAACAATCAAGGAAGAGTTTTCCACAAGAATCATCTTCGAGAGCAAAGAGACCAGTGGAGTTAGTTCACACCGATCTTTGTGGACTAATCAAACCAAGTTCTTTTGGTAAGAATAACTATTTCTTATTATTTATTGATGCTTTCACCCGAAAAACTTGGGTTTACTTTGTCAAGGAGAAATCAGAAGTATTTGACATGTTTAAGAGATTTAAAGCTCTTGTTGAAAAAGAAAGTGGTTATTACATTGCTTTGAGATCAGATAGGGGAGGTGAATTCACTTCAAATGAATTCAAAACTTTTTACACAGAAAATAAAATTCGTCGATCTATGACAGTTCCATTTACTCCTCAACAAAATGGTGTTGTTGAAAGGAAGAACCGAACAATAATTAACATGGCTCAAAATATGTTAAAGTGCAAGAAGATGCCAAAAGAATTTTGGGCACAGGTTGTTGAATGTGCAGTGTACTTGTCAAATCGTTCCCCTACTAGAAGCTTATGGAACAAAAGTCCTTAA

Protein sequence

MCGSKSMFVEFDEFVGGDIVFGDATKIPVKGKGKMLINLKNGKHEFIANVYNVPNMKNNILSLGQLLEKGYSILMKDYSLLIRDNHDKIIAKVQMAKNRMFLLNIQTNVAKCLKLCLKDPNWIWHLRFGHLNFDSLRLLARKDMVKGLPYVKHPDQLCEGYLHGKQSRKSFPQESSSRAKRPVELVHTDLCGLIKPSSFGKNNYFLLFIDAFTRKTWVYFVKEKSEVFDMFKRFKALVEKESGYYIALRSDRGGEFTSNEFKTFYTENKIRRSMTVPFTPQQNGVVERKNRTIINMAQNMLKCKKMPKEFWAQVVECAVYLSNRSPTRSLWNKSP

Homology

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BLAST of Cmc08g0228451 vs. NCBI nr
Match: KAA0034929.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 688.0 bits (1774), Expect = 4.2e-194
Identity = 335/335 (100.00%), Postives = 335/335 (100.00%), Query Frame = 0


Query: 1   MCGSKSMFVEFDEFVGGDIVFGDATKIPVKGKGKMLINLKNGKHEFIANVYNVPNMKNNI 60
           MCGSKSMFVEFDEFVGGDIVFGDATKIPVKGKGKMLINLKNGKHEFIANVYNVPNMKNNI
Sbjct: 147 MCGSKSMFVEFDEFVGGDIVFGDATKIPVKGKGKMLINLKNGKHEFIANVYNVPNMKNNI 206

Query: 61  LSLGQLLEKGYSILMKDYSLLIRDNHDKIIAKVQMAKNRMFLLNIQTNVAKCLKLCLKDP 120
           LSLGQLLEKGYSILMKDYSLLIRDNHDKIIAKVQMAKNRMFLLNIQTNVAKCLKLCLKDP
Sbjct: 207 LSLGQLLEKGYSILMKDYSLLIRDNHDKIIAKVQMAKNRMFLLNIQTNVAKCLKLCLKDP 266

Query: 121 NWIWHLRFGHLNFDSLRLLARKDMVKGLPYVKHPDQLCEGYLHGKQSRKSFPQESSSRAK 180
           NWIWHLRFGHLNFDSLRLLARKDMVKGLPYVKHPDQLCEGYLHGKQSRKSFPQESSSRAK
Sbjct: 267 NWIWHLRFGHLNFDSLRLLARKDMVKGLPYVKHPDQLCEGYLHGKQSRKSFPQESSSRAK 326

Query: 181 RPVELVHTDLCGLIKPSSFGKNNYFLLFIDAFTRKTWVYFVKEKSEVFDMFKRFKALVEK 240
           RPVELVHTDLCGLIKPSSFGKNNYFLLFIDAFTRKTWVYFVKEKSEVFDMFKRFKALVEK
Sbjct: 327 RPVELVHTDLCGLIKPSSFGKNNYFLLFIDAFTRKTWVYFVKEKSEVFDMFKRFKALVEK 386

Query: 241 ESGYYIALRSDRGGEFTSNEFKTFYTENKIRRSMTVPFTPQQNGVVERKNRTIINMAQNM 300
           ESGYYIALRSDRGGEFTSNEFKTFYTENKIRRSMTVPFTPQQNGVVERKNRTIINMAQNM
Sbjct: 387 ESGYYIALRSDRGGEFTSNEFKTFYTENKIRRSMTVPFTPQQNGVVERKNRTIINMAQNM 446

Query: 301 LKCKKMPKEFWAQVVECAVYLSNRSPTRSLWNKSP 336
           LKCKKMPKEFWAQVVECAVYLSNRSPTRSLWNKSP
Sbjct: 447 LKCKKMPKEFWAQVVECAVYLSNRSPTRSLWNKSP 481

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BLAST of Cmc08g0228451 vs. NCBI nr
Match: TYK29027.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 622.1 bits (1603), Expect = 2.8e-174
Identity = 305/336 (90.77%), Postives = 319/336 (94.94%), Query Frame = 0


Query: 1   MCGSKSMFVEFDEFVGGDIVFGDATKIPVKGKGKMLINLKNGKHEFIANVYNVPNMKNNI 60
           MCGSKSMFVE DE VGGDIVFGDATKIPVKGKGK+LINLKNGKHEFI+NVY VPNMKNNI
Sbjct: 232 MCGSKSMFVELDESVGGDIVFGDATKIPVKGKGKILINLKNGKHEFISNVYYVPNMKNNI 291

Query: 61  LSLGQLLEKGYSILMKDYSLLIRDNHDKIIAKVQMAKNRMFLLNIQTNVAKCLKLCLKDP 120
           LSLGQLLEKGY+ILMKDYSLLIRDNHDKIIAKVQM KNRMFLLNIQT+VA+CLK CLKDP
Sbjct: 292 LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVAQCLKSCLKDP 351

Query: 121 NWIWHLRFGHLNFDSLRLLARKDMVKGLPYVKHPDQLCEGYLHGKQSRKSFPQESSSRAK 180
           NWIWHLRFGHLNFD LRLLARK+MVKGLPYVK PDQLCEG LHGKQSRKSFPQESS RA+
Sbjct: 352 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKLPDQLCEGCLHGKQSRKSFPQESSWRAR 411

Query: 181 RPVELVHTDLCGLIKPSSFGKNNYFLLFIDAFTRKTWVYFVKEKSEVFDMFKRFKALVEK 240
           RP+ELVHTDLCG IKPSSFGKNNYFLLFID F+RKTWVYFVKEKSEVF MFKRFKALVEK
Sbjct: 412 RPLELVHTDLCGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSEVFGMFKRFKALVEK 471

Query: 241 ESGYYI-ALRSDRGGEFTSNEFKTFYTENKIRRSMTVPFTPQQNGVVERKNRTIINMAQN 300
           ESGYYI ALRSDRGGEFTSNEFKTF  EN IRR+MTVPFTPQQNGVVERKNRTI+NMA++
Sbjct: 472 ESGYYIKALRSDRGGEFTSNEFKTFCVENGIRRTMTVPFTPQQNGVVERKNRTILNMARS 531

Query: 301 MLKCKKMPKEFWAQVVECAVYLSNRSPTRSLWNKSP 336
           MLKCKKMPKEFWAQ VECAVYLSNRSPTRSLWNK+P
Sbjct: 532 MLKCKKMPKEFWAQAVECAVYLSNRSPTRSLWNKTP 567

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BLAST of Cmc08g0228451 vs. NCBI nr
Match: TYK18362.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 621.7 bits (1602), Expect = 3.7e-174
Identity = 304/336 (90.48%), Postives = 319/336 (94.94%), Query Frame = 0


Query: 1   MCGSKSMFVEFDEFVGGDIVFGDATKIPVKGKGKMLINLKNGKHEFIANVYNVPNMKNNI 60
           MCGSKSMF+E DE VGGDIVFGDATKIPVKGKGK+LINLKNGKHEFI+NVY VPNMKNNI
Sbjct: 332 MCGSKSMFIELDESVGGDIVFGDATKIPVKGKGKILINLKNGKHEFISNVYYVPNMKNNI 391

Query: 61  LSLGQLLEKGYSILMKDYSLLIRDNHDKIIAKVQMAKNRMFLLNIQTNVAKCLKLCLKDP 120
           LSLGQLLEKGY+ILMKDYSLLIRDNHDKIIAKVQM KNRMFLLNIQT+VA+CLK CLKDP
Sbjct: 392 LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVAQCLKSCLKDP 451

Query: 121 NWIWHLRFGHLNFDSLRLLARKDMVKGLPYVKHPDQLCEGYLHGKQSRKSFPQESSSRAK 180
           NWIWHLRFGHLNFD LRLLARK+MVKGLPYVK PDQLCEG LHGKQSRKSFPQESS RA+
Sbjct: 452 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKLPDQLCEGCLHGKQSRKSFPQESSWRAR 511

Query: 181 RPVELVHTDLCGLIKPSSFGKNNYFLLFIDAFTRKTWVYFVKEKSEVFDMFKRFKALVEK 240
           RP+ELVHTDLCG IKPSSFGKNNYFLLFID F+RKTWVYFVKEKSEVF MFKRFKALVEK
Sbjct: 512 RPLELVHTDLCGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSEVFGMFKRFKALVEK 571

Query: 241 ESGYYI-ALRSDRGGEFTSNEFKTFYTENKIRRSMTVPFTPQQNGVVERKNRTIINMAQN 300
           ESGYYI ALRSDRGGEFTSNEFKTF  EN IRR+MTVPFTPQQNGVVERKNRTI+NMA++
Sbjct: 572 ESGYYIKALRSDRGGEFTSNEFKTFCVENGIRRTMTVPFTPQQNGVVERKNRTILNMARS 631

Query: 301 MLKCKKMPKEFWAQVVECAVYLSNRSPTRSLWNKSP 336
           MLKCKKMPKEFWAQ VECAVYLSNRSPTRSLWNK+P
Sbjct: 632 MLKCKKMPKEFWAQAVECAVYLSNRSPTRSLWNKTP 667

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BLAST of Cmc08g0228451 vs. NCBI nr
Match: KAA0047979.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 621.7 bits (1602), Expect = 3.7e-174
Identity = 304/336 (90.48%), Postives = 319/336 (94.94%), Query Frame = 0


Query: 1   MCGSKSMFVEFDEFVGGDIVFGDATKIPVKGKGKMLINLKNGKHEFIANVYNVPNMKNNI 60
           MCGSKSMF+E DE VGGDIVFGDATKIPVKGKGK+LINLKNGKHEFI+NVY VPNMKNNI
Sbjct: 332 MCGSKSMFIELDESVGGDIVFGDATKIPVKGKGKILINLKNGKHEFISNVYYVPNMKNNI 391

Query: 61  LSLGQLLEKGYSILMKDYSLLIRDNHDKIIAKVQMAKNRMFLLNIQTNVAKCLKLCLKDP 120
           LSLGQLLEKGY+ILMKDYSLLIRDNHDKIIAKVQM KNRMFLLNIQT+VA+CLK CLKDP
Sbjct: 392 LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVAQCLKSCLKDP 451

Query: 121 NWIWHLRFGHLNFDSLRLLARKDMVKGLPYVKHPDQLCEGYLHGKQSRKSFPQESSSRAK 180
           NWIWHLRFGHLNFD LRLLARK+MVKGLPYVK PDQLCEG LHGKQSRKSFPQESS RA+
Sbjct: 452 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKLPDQLCEGCLHGKQSRKSFPQESSWRAR 511

Query: 181 RPVELVHTDLCGLIKPSSFGKNNYFLLFIDAFTRKTWVYFVKEKSEVFDMFKRFKALVEK 240
           RP+ELVHTDLCG IKPSSFGKNNYFLLFID F+RKTWVYFVKEKSEVF MFKRFKALVEK
Sbjct: 512 RPLELVHTDLCGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSEVFGMFKRFKALVEK 571

Query: 241 ESGYYI-ALRSDRGGEFTSNEFKTFYTENKIRRSMTVPFTPQQNGVVERKNRTIINMAQN 300
           ESGYYI ALRSDRGGEFTSNEFKTF  EN IRR+MTVPFTPQQNGVVERKNRTI+NMA++
Sbjct: 572 ESGYYIKALRSDRGGEFTSNEFKTFCVENGIRRTMTVPFTPQQNGVVERKNRTILNMARS 631

Query: 301 MLKCKKMPKEFWAQVVECAVYLSNRSPTRSLWNKSP 336
           MLKCKKMPKEFWAQ VECAVYLSNRSPTRSLWNK+P
Sbjct: 632 MLKCKKMPKEFWAQAVECAVYLSNRSPTRSLWNKTP 667

[Close]

BLAST of Cmc08g0228451 vs. NCBI nr
Match: TYJ96309.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 621.7 bits (1602), Expect = 3.7e-174
Identity = 304/336 (90.48%), Postives = 319/336 (94.94%), Query Frame = 0


Query: 1   MCGSKSMFVEFDEFVGGDIVFGDATKIPVKGKGKMLINLKNGKHEFIANVYNVPNMKNNI 60
           MCGSKSMF+E DE VGGDIVFGDATKIPVKGKGK+LINLKNGKHEFI+NVY VPNMKNNI
Sbjct: 332 MCGSKSMFIELDESVGGDIVFGDATKIPVKGKGKILINLKNGKHEFISNVYYVPNMKNNI 391

Query: 61  LSLGQLLEKGYSILMKDYSLLIRDNHDKIIAKVQMAKNRMFLLNIQTNVAKCLKLCLKDP 120
           LSLGQLLEKGY+ILMKDYSLLIRDNHDKIIAKVQM KNRMFLLNIQT+VA+CLK CLKDP
Sbjct: 392 LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVAQCLKSCLKDP 451

Query: 121 NWIWHLRFGHLNFDSLRLLARKDMVKGLPYVKHPDQLCEGYLHGKQSRKSFPQESSSRAK 180
           NWIWHLRFGHLNFD LRLLARK+MVKGLPYVK PDQLCEG LHGKQSRKSFPQESS RA+
Sbjct: 452 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKLPDQLCEGCLHGKQSRKSFPQESSWRAR 511

Query: 181 RPVELVHTDLCGLIKPSSFGKNNYFLLFIDAFTRKTWVYFVKEKSEVFDMFKRFKALVEK 240
           RP+ELVHTDLCG IKPSSFGKNNYFLLFID F+RKTWVYFVKEKSEVF MFKRFKALVEK
Sbjct: 512 RPLELVHTDLCGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSEVFGMFKRFKALVEK 571

Query: 241 ESGYYI-ALRSDRGGEFTSNEFKTFYTENKIRRSMTVPFTPQQNGVVERKNRTIINMAQN 300
           ESGYYI ALRSDRGGEFTSNEFKTF  EN IRR+MTVPFTPQQNGVVERKNRTI+NMA++
Sbjct: 572 ESGYYIKALRSDRGGEFTSNEFKTFCVENGIRRTMTVPFTPQQNGVVERKNRTILNMARS 631

Query: 301 MLKCKKMPKEFWAQVVECAVYLSNRSPTRSLWNKSP 336
           MLKCKKMPKEFWAQ VECAVYLSNRSPTRSLWNK+P
Sbjct: 632 MLKCKKMPKEFWAQAVECAVYLSNRSPTRSLWNKTP 667

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BLAST of Cmc08g0228451 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 4.3e-48
Identity = 118/322 (36.65%), Postives = 182/322 (56.52%), Query Frame = 0


Query: 11  FDEFVGGD---IVFGDATKIPVKGKGKMLINLKNGKHEFIANVYNVPNMKNNILSLGQLL 70
           F  +V GD   +  G+ +   + G G + I    G    + +V +VP+++ N++S   L 
Sbjct: 311 FCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLISGIALD 370

Query: 71  EKGYSILMKDYSLLIRDNHDKIIAKVQMAKNRMFLLNIQTNVAKCLKLCLKDPNWIWHLR 130
             GY     +    +      +IAK  +A+  ++  N +    +      +    +WH R
Sbjct: 371 RDGYESYFANQKWRLTKG-SLVIAK-GVARGTLYRTNAEICQGELNAAQDEISVDLWHKR 430

Query: 131 FGHLNFDSLRLLARKDMVKGLPYVKHPD-QLCEGYLHGKQSRKSFPQESSSRAKRPVELV 190
            GH++   L++LA+K ++    Y K    + C+  L GKQ R SF Q SS R    ++LV
Sbjct: 431 MGHMSEKGLQILAKKSLIS---YAKGTTVKPCDYCLFGKQHRVSF-QTSSERKLNILDLV 490

Query: 191 HTDLCGLIKPSSFGKNNYFLLFIDAFTRKTWVYFVKEKSEVFDMFKRFKALVEKESGYYI 250
           ++D+CG ++  S G N YF+ FID  +RK WVY +K K +VF +F++F ALVE+E+G  +
Sbjct: 491 YSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKL 550

Query: 251 -ALRSDRGGEFTSNEFKTFYTENKIRRSMTVPFTPQQNGVVERKNRTIINMAQNMLKCKK 310
             LRSD GGE+TS EF+ + + + IR   TVP TPQ NGV ER NRTI+   ++ML+  K
Sbjct: 551 KRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAK 610

Query: 311 MPKEFWAQVVECAVYLSNRSPT 328
           +PK FW + V+ A YL NRSP+
Sbjct: 611 LPKSFWGEAVQTACYLINRSPS 626

[Close]

BLAST of Cmc08g0228451 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 163.3 bits (412), Expect = 4.7e-39
Identity = 104/304 (34.21%), Postives = 158/304 (51.97%), Query Frame = 0


Query: 36  LINLKNGKHEFIANVYNVPNMKNNILSLGQLLEKGYSILMKDYSLLIRDNHDKIIAKVQM 95
           ++ L+N     + +V        N++S+ +L E G SI      + I  N   ++    M
Sbjct: 334 IVRLRNDHEITLEDVLFCKEAAGNLMSVKRLQEAGMSIEFDKSGVTISKNGLMVVKNSGM 393

Query: 96  AKNRMFLLNIQTNVAKCLKLCLKDPNWIWHLRFGHLNFDSLRLLARKDMVKGLPYVKHPD 155
             N + ++N Q   A  +    K+   +WH RFGH++   L  + RK+M      + + +
Sbjct: 394 L-NNVPVINFQ---AYSINAKHKNNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNNLE 453

Query: 156 ---QLCEGYLHGKQSRKSFPQ-ESSSRAKRPVELVHTDLCGLIKPSSFGKNNYFLLFIDA 215
              ++CE  L+GKQ+R  F Q +  +  KRP+ +VH+D+CG I P +    NYF++F+D 
Sbjct: 454 LSCEICEPCLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQ 513

Query: 216 FTRKTWVYFVKEKSEVFDMFKRFKALVEKESGYYIA-LRSDRGGEFTSNEFKTFYTENKI 275
           FT     Y +K KS+VF MF+ F A  E      +  L  D G E+ SNE + F  +  I
Sbjct: 514 FTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGI 573

Query: 276 RRSMTVPFTPQQNGVVERKNRTIINMAQNMLKCKKMPKEFWAQVVECAVYLSNRSPTRSL 335
              +TVP TPQ NGV ER  RTI   A+ M+   K+ K FW + V  A YL NR P+R+L
Sbjct: 574 SYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRAL 633

[Close]

BLAST of Cmc08g0228451 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.4e-27
Identity = 95/326 (29.14%), Postives = 155/326 (47.55%), Query Frame = 0


Query: 16  GGDIVFGDATKIPVKGKGKMLINLKNGKHEFIANVYNVPNMKNNILSLGQLLEKG-YSIL 75
           G D++  D + IP+   G   +   +   + +  V  VPN+  N++S+ +L      S+ 
Sbjct: 336 GDDVMIADGSTIPITHTGSASLPTSSRSLD-LNKVLYVPNIHKNLISVYRLCNTNRVSVE 395

Query: 76  MKDYSLLIRDNHDKIIAKVQMAKNRMFLLNIQTN--VAKCLKLCLKDPNWIWHLRFGHLN 135
               S  ++D +  +       K+ ++   I ++  V+     C K  +  WH R GH  
Sbjct: 396 FFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQAVSMFASPCSKATHSSWHSRLGH-- 455

Query: 136 FDSLRLLARKDMVKGLPYVKHPDQL--CEGYLHGKQSRKSFPQESSSRAKRPVELVHTDL 195
             SL +L        LP +    +L  C      K  +  F   S+  + +P+E +++D+
Sbjct: 456 -PSLAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPF-SNSTITSSKPLEYIYSDV 515

Query: 196 CGLIKPSSFGKNNYFLLFIDAFTRKTWVYFVKEKSEVFDMFKRFKALVEKESGYYI-ALR 255
                  S     Y+++F+D FTR TW+Y +K+KS+V D F  FK+LVE      I  L 
Sbjct: 516 WS-SPILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLY 575

Query: 256 SDRGGEFTSNEFKTFYTENKIRRSMTVPFTPQQNGVVERKNRTIINMAQNMLKCKKMPKE 315
           SD GGEF     + + +++ I    + P TP+ NG+ ERK+R I+ M   +L    +PK 
Sbjct: 576 SDNGGEFV--VLRDYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLSHASVPKT 635

Query: 316 FWAQVVECAVYLSNRSPTRSLWNKSP 336
           +W      AVYL NR PT  L  +SP
Sbjct: 636 YWPYAFSVAVYLINRLPTPLLQLQSP 653

[Close]

BLAST of Cmc08g0228451 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 3.5e-26
Identity = 92/324 (28.40%), Postives = 155/324 (47.84%), Query Frame = 0


Query: 16  GGDIVFGDATKIPVKGKGKMLINLKNGKHEFIANVYNVPNMKNNILSLGQLLE-KGYSIL 75
           G D++  D + IP+   G   ++ K+ +   + N+  VPN+  N++S+ +L    G S+ 
Sbjct: 357 GDDVMVADGSTIPISHTGSTSLSTKS-RPLNLHNILYVPNIHKNLISVYRLCNANGVSVE 416

Query: 76  MKDYSLLIRDNHDKIIAKVQMAKNRMFLLNIQTN--VAKCLKLCLKDPNWIWHLRFGHLN 135
               S  ++D +  +       K+ ++   I ++  V+       K  +  WH R GH  
Sbjct: 417 FFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQPVSLFASPSSKATHSSWHARLGHPA 476

Query: 136 FDSLRLLARKDMVKGLPYVKHPDQLCEGYLHGKQSRKSFPQESSSRAKRPVELVHTDLCG 195
              L  +     +  L    H    C   L  K ++  F Q S+  + RP+E +++D+  
Sbjct: 477 PSILNSVISNYSLSVL-NPSHKFLSCSDCLINKSNKVPFSQ-STINSTRPLEYIYSDVWS 536

Query: 196 LIKPSSFGKNNYFLLFIDAFTRKTWVYFVKEKSEVFDMFKRFKALVEKESGYYI-ALRSD 255
                S     Y+++F+D FTR TW+Y +K+KS+V + F  FK L+E      I    SD
Sbjct: 537 -SPILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTRIGTFYSD 596

Query: 256 RGGEFTSNEFKTFYTENKIRRSMTVPFTPQQNGVVERKNRTIINMAQNMLKCKKMPKEFW 315
            GGEF +     +++++ I    + P TP+ NG+ ERK+R I+     +L    +PK +W
Sbjct: 597 NGGEFVA--LWEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHASIPKTYW 656

Query: 316 AQVVECAVYLSNRSPTRSLWNKSP 336
                 AVYL NR PT  L  +SP
Sbjct: 657 PYAFAVAVYLINRLPTPLLQLESP 674

[Close]

BLAST of Cmc08g0228451 vs. ExPASy Swiss-Prot
Match: Q12491 (Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-B PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.9e-20
Identity = 82/330 (24.85%), Postives = 143/330 (43.33%), Query Frame = 0


Query: 18  DIVFGDATKIPVKGKGKMLINLKNGKHEFIANVYNVPNMKNNILSLGQLLEKGYSILMKD 77
           +IV      IP+   G +  N +NG    I    + PN+  ++LSL +L  +  +     
Sbjct: 481 NIVDAQKQDIPINAIGNLHFNFQNGTKTSI-KALHTPNIAYDLLSLSELANQNITACFTR 540

Query: 78  YSL----------LIRDNHDKIIAKVQMAKNRMFLLNIQTNVAKCLKLCLKDPNWIWHLR 137
            +L          +++      ++K  +  + +  L I  NV K  K   K P  + H  
Sbjct: 541 NTLERSDGTVLAPIVKHGDFYWLSKKYLIPSHISKLTI-NNVNKS-KSVNKYPYPLIHRM 600

Query: 138 FGHLNFDSLRLLARKDMVKGLPYVKHPD--------QLCEGYLHGKQSRKSFPQESS--- 197
            GH NF S++   +K+ V    Y+K  D          C   L GK ++    + S    
Sbjct: 601 LGHANFRSIQKSLKKNAV---TYLKESDIEWSNASTYQCPDCLIGKSTKHRHVKGSRLKY 660

Query: 198 SRAKRPVELVHTDLCGLIKPSSFGKNNYFLLFIDAFTRKTWVYFVKEKSE--VFDMFKRF 257
             +  P + +HTD+ G +        +YF+ F D  TR  WVY + ++ E  + ++F   
Sbjct: 661 QESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSI 720

Query: 258 KALVEKE-SGYYIALRSDRGGEFTSNEFKTFYTENKIRRSMTVPFTPQQNGVVERKNRTI 317
            A ++ + +   + ++ DRG E+T+     F+T   I    T     + +GV ER NRT+
Sbjct: 721 LAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLNRTL 780

Query: 318 INMAQNMLKCKKMPKEFWAQVVECAVYLSN 324
           +N  + +L C  +P   W   VE +  + N
Sbjct: 781 LNDCRTLLHCSGLPNHLWFSAVEFSTIIRN 804

[Close]

BLAST of Cmc08g0228451 vs. ExPASy TrEMBL
Match: A0A5A7T0P8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold103G00610 PE=4 SV=1)

HSP 1 Score: 688.0 bits (1774), Expect = 2.0e-194
Identity = 335/335 (100.00%), Postives = 335/335 (100.00%), Query Frame = 0


Query: 1   MCGSKSMFVEFDEFVGGDIVFGDATKIPVKGKGKMLINLKNGKHEFIANVYNVPNMKNNI 60
           MCGSKSMFVEFDEFVGGDIVFGDATKIPVKGKGKMLINLKNGKHEFIANVYNVPNMKNNI
Sbjct: 147 MCGSKSMFVEFDEFVGGDIVFGDATKIPVKGKGKMLINLKNGKHEFIANVYNVPNMKNNI 206

Query: 61  LSLGQLLEKGYSILMKDYSLLIRDNHDKIIAKVQMAKNRMFLLNIQTNVAKCLKLCLKDP 120
           LSLGQLLEKGYSILMKDYSLLIRDNHDKIIAKVQMAKNRMFLLNIQTNVAKCLKLCLKDP
Sbjct: 207 LSLGQLLEKGYSILMKDYSLLIRDNHDKIIAKVQMAKNRMFLLNIQTNVAKCLKLCLKDP 266

Query: 121 NWIWHLRFGHLNFDSLRLLARKDMVKGLPYVKHPDQLCEGYLHGKQSRKSFPQESSSRAK 180
           NWIWHLRFGHLNFDSLRLLARKDMVKGLPYVKHPDQLCEGYLHGKQSRKSFPQESSSRAK
Sbjct: 267 NWIWHLRFGHLNFDSLRLLARKDMVKGLPYVKHPDQLCEGYLHGKQSRKSFPQESSSRAK 326

Query: 181 RPVELVHTDLCGLIKPSSFGKNNYFLLFIDAFTRKTWVYFVKEKSEVFDMFKRFKALVEK 240
           RPVELVHTDLCGLIKPSSFGKNNYFLLFIDAFTRKTWVYFVKEKSEVFDMFKRFKALVEK
Sbjct: 327 RPVELVHTDLCGLIKPSSFGKNNYFLLFIDAFTRKTWVYFVKEKSEVFDMFKRFKALVEK 386

Query: 241 ESGYYIALRSDRGGEFTSNEFKTFYTENKIRRSMTVPFTPQQNGVVERKNRTIINMAQNM 300
           ESGYYIALRSDRGGEFTSNEFKTFYTENKIRRSMTVPFTPQQNGVVERKNRTIINMAQNM
Sbjct: 387 ESGYYIALRSDRGGEFTSNEFKTFYTENKIRRSMTVPFTPQQNGVVERKNRTIINMAQNM 446

Query: 301 LKCKKMPKEFWAQVVECAVYLSNRSPTRSLWNKSP 336
           LKCKKMPKEFWAQVVECAVYLSNRSPTRSLWNKSP
Sbjct: 447 LKCKKMPKEFWAQVVECAVYLSNRSPTRSLWNKSP 481

[Close]

BLAST of Cmc08g0228451 vs. ExPASy TrEMBL
Match: A0A5D3DYS0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G001400 PE=4 SV=1)

HSP 1 Score: 622.1 bits (1603), Expect = 1.4e-174
Identity = 305/336 (90.77%), Postives = 319/336 (94.94%), Query Frame = 0


Query: 1   MCGSKSMFVEFDEFVGGDIVFGDATKIPVKGKGKMLINLKNGKHEFIANVYNVPNMKNNI 60
           MCGSKSMFVE DE VGGDIVFGDATKIPVKGKGK+LINLKNGKHEFI+NVY VPNMKNNI
Sbjct: 232 MCGSKSMFVELDESVGGDIVFGDATKIPVKGKGKILINLKNGKHEFISNVYYVPNMKNNI 291

Query: 61  LSLGQLLEKGYSILMKDYSLLIRDNHDKIIAKVQMAKNRMFLLNIQTNVAKCLKLCLKDP 120
           LSLGQLLEKGY+ILMKDYSLLIRDNHDKIIAKVQM KNRMFLLNIQT+VA+CLK CLKDP
Sbjct: 292 LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVAQCLKSCLKDP 351

Query: 121 NWIWHLRFGHLNFDSLRLLARKDMVKGLPYVKHPDQLCEGYLHGKQSRKSFPQESSSRAK 180
           NWIWHLRFGHLNFD LRLLARK+MVKGLPYVK PDQLCEG LHGKQSRKSFPQESS RA+
Sbjct: 352 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKLPDQLCEGCLHGKQSRKSFPQESSWRAR 411

Query: 181 RPVELVHTDLCGLIKPSSFGKNNYFLLFIDAFTRKTWVYFVKEKSEVFDMFKRFKALVEK 240
           RP+ELVHTDLCG IKPSSFGKNNYFLLFID F+RKTWVYFVKEKSEVF MFKRFKALVEK
Sbjct: 412 RPLELVHTDLCGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSEVFGMFKRFKALVEK 471

Query: 241 ESGYYI-ALRSDRGGEFTSNEFKTFYTENKIRRSMTVPFTPQQNGVVERKNRTIINMAQN 300
           ESGYYI ALRSDRGGEFTSNEFKTF  EN IRR+MTVPFTPQQNGVVERKNRTI+NMA++
Sbjct: 472 ESGYYIKALRSDRGGEFTSNEFKTFCVENGIRRTMTVPFTPQQNGVVERKNRTILNMARS 531

Query: 301 MLKCKKMPKEFWAQVVECAVYLSNRSPTRSLWNKSP 336
           MLKCKKMPKEFWAQ VECAVYLSNRSPTRSLWNK+P
Sbjct: 532 MLKCKKMPKEFWAQAVECAVYLSNRSPTRSLWNKTP 567

[Close]

BLAST of Cmc08g0228451 vs. ExPASy TrEMBL
Match: A0A5A7V3X9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G003030 PE=4 SV=1)

HSP 1 Score: 621.7 bits (1602), Expect = 1.8e-174
Identity = 304/336 (90.48%), Postives = 319/336 (94.94%), Query Frame = 0


Query: 1   MCGSKSMFVEFDEFVGGDIVFGDATKIPVKGKGKMLINLKNGKHEFIANVYNVPNMKNNI 60
           MCGSKSMF+E DE VGGDIVFGDATKIPVKGKGK+LINLKNGKHEFI+NVY VPNMKNNI
Sbjct: 332 MCGSKSMFIELDESVGGDIVFGDATKIPVKGKGKILINLKNGKHEFISNVYYVPNMKNNI 391

Query: 61  LSLGQLLEKGYSILMKDYSLLIRDNHDKIIAKVQMAKNRMFLLNIQTNVAKCLKLCLKDP 120
           LSLGQLLEKGY+ILMKDYSLLIRDNHDKIIAKVQM KNRMFLLNIQT+VA+CLK CLKDP
Sbjct: 392 LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVAQCLKSCLKDP 451

Query: 121 NWIWHLRFGHLNFDSLRLLARKDMVKGLPYVKHPDQLCEGYLHGKQSRKSFPQESSSRAK 180
           NWIWHLRFGHLNFD LRLLARK+MVKGLPYVK PDQLCEG LHGKQSRKSFPQESS RA+
Sbjct: 452 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKLPDQLCEGCLHGKQSRKSFPQESSWRAR 511

Query: 181 RPVELVHTDLCGLIKPSSFGKNNYFLLFIDAFTRKTWVYFVKEKSEVFDMFKRFKALVEK 240
           RP+ELVHTDLCG IKPSSFGKNNYFLLFID F+RKTWVYFVKEKSEVF MFKRFKALVEK
Sbjct: 512 RPLELVHTDLCGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSEVFGMFKRFKALVEK 571

Query: 241 ESGYYI-ALRSDRGGEFTSNEFKTFYTENKIRRSMTVPFTPQQNGVVERKNRTIINMAQN 300
           ESGYYI ALRSDRGGEFTSNEFKTF  EN IRR+MTVPFTPQQNGVVERKNRTI+NMA++
Sbjct: 572 ESGYYIKALRSDRGGEFTSNEFKTFCVENGIRRTMTVPFTPQQNGVVERKNRTILNMARS 631

Query: 301 MLKCKKMPKEFWAQVVECAVYLSNRSPTRSLWNKSP 336
           MLKCKKMPKEFWAQ VECAVYLSNRSPTRSLWNK+P
Sbjct: 632 MLKCKKMPKEFWAQAVECAVYLSNRSPTRSLWNKTP 667

[Close]

BLAST of Cmc08g0228451 vs. ExPASy TrEMBL
Match: A0A5A7SJX6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G002010 PE=4 SV=1)

HSP 1 Score: 621.7 bits (1602), Expect = 1.8e-174
Identity = 304/336 (90.48%), Postives = 319/336 (94.94%), Query Frame = 0


Query: 1   MCGSKSMFVEFDEFVGGDIVFGDATKIPVKGKGKMLINLKNGKHEFIANVYNVPNMKNNI 60
           MCGSKSMF+E DE VGGDIVFGDATKIPVKGKGK+LINLKNGKHEFI+NVY VPNMKNNI
Sbjct: 332 MCGSKSMFIELDESVGGDIVFGDATKIPVKGKGKILINLKNGKHEFISNVYYVPNMKNNI 391

Query: 61  LSLGQLLEKGYSILMKDYSLLIRDNHDKIIAKVQMAKNRMFLLNIQTNVAKCLKLCLKDP 120
           LSLGQLLEKGY+ILMKDYSLLIRDNHDKIIAKVQM KNRMFLLNIQT+VA+CLK CLKDP
Sbjct: 392 LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVAQCLKSCLKDP 451

Query: 121 NWIWHLRFGHLNFDSLRLLARKDMVKGLPYVKHPDQLCEGYLHGKQSRKSFPQESSSRAK 180
           NWIWHLRFGHLNFD LRLLARK+MVKGLPYVK PDQLCEG LHGKQSRKSFPQESS RA+
Sbjct: 452 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKLPDQLCEGCLHGKQSRKSFPQESSWRAR 511

Query: 181 RPVELVHTDLCGLIKPSSFGKNNYFLLFIDAFTRKTWVYFVKEKSEVFDMFKRFKALVEK 240
           RP+ELVHTDLCG IKPSSFGKNNYFLLFID F+RKTWVYFVKEKSEVF MFKRFKALVEK
Sbjct: 512 RPLELVHTDLCGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSEVFGMFKRFKALVEK 571

Query: 241 ESGYYI-ALRSDRGGEFTSNEFKTFYTENKIRRSMTVPFTPQQNGVVERKNRTIINMAQN 300
           ESGYYI ALRSDRGGEFTSNEFKTF  EN IRR+MTVPFTPQQNGVVERKNRTI+NMA++
Sbjct: 572 ESGYYIKALRSDRGGEFTSNEFKTFCVENGIRRTMTVPFTPQQNGVVERKNRTILNMARS 631

Query: 301 MLKCKKMPKEFWAQVVECAVYLSNRSPTRSLWNKSP 336
           MLKCKKMPKEFWAQ VECAVYLSNRSPTRSLWNK+P
Sbjct: 632 MLKCKKMPKEFWAQAVECAVYLSNRSPTRSLWNKTP 667

[Close]

BLAST of Cmc08g0228451 vs. ExPASy TrEMBL
Match: A0A5A7V308 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00290 PE=4 SV=1)

HSP 1 Score: 621.7 bits (1602), Expect = 1.8e-174
Identity = 304/336 (90.48%), Postives = 319/336 (94.94%), Query Frame = 0


Query: 1   MCGSKSMFVEFDEFVGGDIVFGDATKIPVKGKGKMLINLKNGKHEFIANVYNVPNMKNNI 60
           MCGSKSMF+E DE VGGDIVFGDATKIPVKGKGK+LINLKNGKHEFI+NVY VPNMKNNI
Sbjct: 332 MCGSKSMFIELDESVGGDIVFGDATKIPVKGKGKILINLKNGKHEFISNVYYVPNMKNNI 391

Query: 61  LSLGQLLEKGYSILMKDYSLLIRDNHDKIIAKVQMAKNRMFLLNIQTNVAKCLKLCLKDP 120
           LSLGQLLEKGY+ILMKDYSLLIRDNHDKIIAKVQM KNRMFLLNIQT+VA+CLK CLKDP
Sbjct: 392 LSLGQLLEKGYNILMKDYSLLIRDNHDKIIAKVQMTKNRMFLLNIQTDVAQCLKSCLKDP 451

Query: 121 NWIWHLRFGHLNFDSLRLLARKDMVKGLPYVKHPDQLCEGYLHGKQSRKSFPQESSSRAK 180
           NWIWHLRFGHLNFD LRLLARK+MVKGLPYVK PDQLCEG LHGKQSRKSFPQESS RA+
Sbjct: 452 NWIWHLRFGHLNFDGLRLLARKNMVKGLPYVKLPDQLCEGCLHGKQSRKSFPQESSWRAR 511

Query: 181 RPVELVHTDLCGLIKPSSFGKNNYFLLFIDAFTRKTWVYFVKEKSEVFDMFKRFKALVEK 240
           RP+ELVHTDLCG IKPSSFGKNNYFLLFID F+RKTWVYFVKEKSEVF MFKRFKALVEK
Sbjct: 512 RPLELVHTDLCGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSEVFGMFKRFKALVEK 571

Query: 241 ESGYYI-ALRSDRGGEFTSNEFKTFYTENKIRRSMTVPFTPQQNGVVERKNRTIINMAQN 300
           ESGYYI ALRSDRGGEFTSNEFKTF  EN IRR+MTVPFTPQQNGVVERKNRTI+NMA++
Sbjct: 572 ESGYYIKALRSDRGGEFTSNEFKTFCVENGIRRTMTVPFTPQQNGVVERKNRTILNMARS 631

Query: 301 MLKCKKMPKEFWAQVVECAVYLSNRSPTRSLWNKSP 336
           MLKCKKMPKEFWAQ VECAVYLSNRSPTRSLWNK+P
Sbjct: 632 MLKCKKMPKEFWAQAVECAVYLSNRSPTRSLWNKTP 667

[Close]

BLAST of Cmc08g0228451 vs. TAIR 10
Match: AT3G21000.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 48.9 bits (115), Expect = 9.2e-06
Identity = 23/51 (45.10%), Postives = 33/51 (64.71%), Query Frame = 0


Query: 23  DATKIPVKGKGKMLINLKNGKHEFIANVYNVPNMKNNILSLGQLLEKGYSI 74
           D T + V+GKG + I +K GK + I NV  VP +  N+LS G+++ K YSI
Sbjct: 312 DGTVLLVEGKGDVKIRMKEGKKKTIRNVIFVPGLNRNVLSFGKMVSKRYSI 362

The following BLAST results are available for this feature:

BLAST of Cmc08g0228451 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0034929.1	4.2e-194	100.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK29027.1	2.8e-174	90.77	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK18362.1	3.7e-174	90.48	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0047979.1	3.7e-174	90.48	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYJ96309.1	3.7e-174	90.48	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of Cmc08g0228451 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	4.3e-48	36.65	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	4.7e-39	34.21	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	2.4e-27	29.14	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	3.5e-26	28.40	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q12491	4.9e-20	24.85	Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc08g0228451 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T0P8	2.0e-194	100.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DYS0	1.4e-174	90.77	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7V3X9	1.8e-174	90.48	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7SJX6	1.8e-174	90.48	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7V308	1.8e-174	90.48	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Cmc08g0228451 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G21000.1	9.2e-06	45.10	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 180..280 e-value: 1.3E-11 score: 44.7
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 178..335 score: 24.79211
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 173..335 e-value: 4.9E-39 score: 135.7
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 117..166 e-value: 2.7E-11 score: 43.2
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 47..334
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 178..335

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0228451.1	Cmc08g0228451.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding