Cmc08g0228441 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0228441
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag-pol polyprotein
Location	CMiso1.1chr08: 22695653 .. 22696147 (-)
RNA-Seq Expression	Cmc08g0228441
Synteny	Cmc08g0228441

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATCAGAATTCGAAATGAGCTTAGTAGGTGAATTGTCTTGCTTTTTGGGGTTGCAGATCAAACAGAGAAGTGAAGGTATATTTATATCGCAAGAAAAGTATGCCAAGAACATACTCAAGAAGTTTGGTCTGGATCAGTCACAATACAAAAGGACTCCAACTGCGACACATGCTAAAATTACCAAGGATAGTATTGGTATTGCAGTAGATCATAAATTGTACAAGAGCATGATTGTGAGCCTCTTATATTTAACGACAAGCAGATCGGATATTGCCTATGCTGTTGGAATATGTGCTCGATATCAGTCAGATCCTCGTATCTCTTACTTGAATGCAGTTAAACGAATAATCAAATATGTTCACGGAACAACCGATTTCGGAATTCTGTATTCCTACAATACATCTTCTGAACTGGTGGGATATTGTGATGCTGACTGGGCTGGTTCTGCTGATGATAGGAAAAGCACCTCTGGTGGATGTTTCTTTCTTTGA

mRNA sequence

ATGAAATCAGAATTCGAAATGAGCTTAGTAGGTGAATTGTCTTGCTTTTTGGGGTTGCAGATCAAACAGAGAAGTGAAGGTATATTTATATCGCAAGAAAAGTATGCCAAGAACATACTCAAGAAGTTTGGTCTGGATCAGTCACAATACAAAAGGACTCCAACTGCGACACATGCTAAAATTACCAAGGATAGTATTGGTATTGCAGTAGATCATAAATTGTACAAGAGCATGATTGTGAGCCTCTTATATTTAACGACAAGCAGATCGGATATTGCCTATGCTGTTGGAATATGTGCTCGATATCAGTCAGATCCTCGTATCTCTTACTTGAATGCAGTTAAACGAATAATCAAATATGTTCACGGAACAACCGATTTCGGAATTCTGTATTCCTACAATACATCTTCTGAACTGGTGGGATATTGTGATGCTGACTGGGCTGGTTCTGCTGATGATAGGAAAAGCACCTCTGGTGGATGTTTCTTTCTTTGA

Coding sequence (CDS)

ATGAAATCAGAATTCGAAATGAGCTTAGTAGGTGAATTGTCTTGCTTTTTGGGGTTGCAGATCAAACAGAGAAGTGAAGGTATATTTATATCGCAAGAAAAGTATGCCAAGAACATACTCAAGAAGTTTGGTCTGGATCAGTCACAATACAAAAGGACTCCAACTGCGACACATGCTAAAATTACCAAGGATAGTATTGGTATTGCAGTAGATCATAAATTGTACAAGAGCATGATTGTGAGCCTCTTATATTTAACGACAAGCAGATCGGATATTGCCTATGCTGTTGGAATATGTGCTCGATATCAGTCAGATCCTCGTATCTCTTACTTGAATGCAGTTAAACGAATAATCAAATATGTTCACGGAACAACCGATTTCGGAATTCTGTATTCCTACAATACATCTTCTGAACTGGTGGGATATTGTGATGCTGACTGGGCTGGTTCTGCTGATGATAGGAAAAGCACCTCTGGTGGATGTTTCTTTCTTTGA

Protein sequence

MKSEFEMSLVGELSCFLGLQIKQRSEGIFISQEKYAKNILKKFGLDQSQYKRTPTATHAKITKDSIGIAVDHKLYKSMIVSLLYLTTSRSDIAYAVGICARYQSDPRISYLNAVKRIIKYVHGTTDFGILYSYNTSSELVGYCDADWAGSADDRKSTSGGCFFL

Homology

[Close]

BLAST of Cmc08g0228441 vs. NCBI nr
Match: KAA0034930.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 328.6 bits (841), Expect = 3.2e-86
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MKSEFEMSLVGELSCFLGLQIKQRSEGIFISQEKYAKNILKKFGLDQSQYKRTPTATHAK 60
           MKSEFEMSLVGELSCFLGLQIKQRSEGIFISQEKYAKNILKKFGLDQSQYKRTPTATHAK
Sbjct: 676 MKSEFEMSLVGELSCFLGLQIKQRSEGIFISQEKYAKNILKKFGLDQSQYKRTPTATHAK 735

Query: 61  ITKDSIGIAVDHKLYKSMIVSLLYLTTSRSDIAYAVGICARYQSDPRISYLNAVKRIIKY 120
           ITKDSIGIAVDHKLYKSMIVSLLYLTTSRSDIAYAVGICARYQSDPRISYLNAVKRIIKY
Sbjct: 736 ITKDSIGIAVDHKLYKSMIVSLLYLTTSRSDIAYAVGICARYQSDPRISYLNAVKRIIKY 795

Query: 121 VHGTTDFGILYSYNTSSELVGYCDADWAGSADDRKSTSGGCFFL 165
           VHGTTDFGILYSYNTSSELVGYCDADWAGSADDRKSTSGGCFFL
Sbjct: 796 VHGTTDFGILYSYNTSSELVGYCDADWAGSADDRKSTSGGCFFL 839

[Close]

BLAST of Cmc08g0228441 vs. NCBI nr
Match: TYK05471.1 (Copia protein [Cucumis melo var. makuwa])

HSP 1 Score: 315.8 bits (808), Expect = 2.1e-82
Identity = 158/164 (96.34%), Postives = 162/164 (98.78%), Query Frame = 0


Query: 1   MKSEFEMSLVGELSCFLGLQIKQRSEGIFISQEKYAKNILKKFGLDQSQYKRTPTATHAK 60
           MKSEFEMSLVGELSCFLGLQIKQRSEGIFISQEKYAKNI+KKFGLDQSQYKRT TATHAK
Sbjct: 670 MKSEFEMSLVGELSCFLGLQIKQRSEGIFISQEKYAKNIVKKFGLDQSQYKRTSTATHAK 729

Query: 61  ITKDSIGIAVDHKLYKSMIVSLLYLTTSRSDIAYAVGICARYQSDPRISYLNAVKRIIKY 120
           ITKDSIGIAVDHKLYKSMIVSLLYLTTSRS+IAYAVGICA+YQSDPRIS+LNAVKRIIKY
Sbjct: 730 ITKDSIGIAVDHKLYKSMIVSLLYLTTSRSNIAYAVGICAQYQSDPRISHLNAVKRIIKY 789

Query: 121 VHGTTDFGILYSYNTSSELVGYCDADWAGSADDRKSTSGGCFFL 165
           VHGTTDF ILYSYNTSSELVGYCDADWAGSADDRKSTSGGCFFL
Sbjct: 790 VHGTTDFRILYSYNTSSELVGYCDADWAGSADDRKSTSGGCFFL 833

[Close]

BLAST of Cmc08g0228441 vs. NCBI nr
Match: KAA0054623.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 288.1 bits (736), Expect = 4.7e-74
Identity = 142/164 (86.59%), Postives = 152/164 (92.68%), Query Frame = 0


Query: 1   MKSEFEMSLVGELSCFLGLQIKQRSEGIFISQEKYAKNILKKFGLDQSQYKRTPTATHAK 60
           M SEFEMSLVGELSCFLGLQIKQRSEG+F+SQEKYAKN++KKFGLDQSQYKRTP ATHAK
Sbjct: 614 MTSEFEMSLVGELSCFLGLQIKQRSEGMFMSQEKYAKNLVKKFGLDQSQYKRTPAATHAK 673

Query: 61  ITKDSIGIAVDHKLYKSMIVSLLYLTTSRSDIAYAVGICARYQSDPRISYLNAVKRIIKY 120
           ITKD++G AVDHKLY+SMI S LYL  SR DIAYAV ICARYQSDP  S+LNAVKRIIKY
Sbjct: 674 ITKDTVGTAVDHKLYRSMIGSHLYLKASRPDIAYAVEICARYQSDPCTSHLNAVKRIIKY 733

Query: 121 VHGTTDFGILYSYNTSSELVGYCDADWAGSADDRKSTSGGCFFL 165
           VHGTTDFGILYSY+T S+LVGYCDADWAGSADDRKSTSGGCFFL
Sbjct: 734 VHGTTDFGILYSYDTFSKLVGYCDADWAGSADDRKSTSGGCFFL 777

[Close]

BLAST of Cmc08g0228441 vs. NCBI nr
Match: KAA0054435.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK14601.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 284.3 bits (726), Expect = 6.8e-73
Identity = 141/164 (85.98%), Postives = 151/164 (92.07%), Query Frame = 0


Query: 1    MKSEFEMSLVGELSCFLGLQIKQRSEGIFISQEKYAKNILKKFGLDQSQYKRTPTATHAK 60
            MKSEFEMSLVGELSCFLGLQIKQRSEG+FISQEKYAKN++KKFGLDQSQ+KRTP  THAK
Sbjct: 865  MKSEFEMSLVGELSCFLGLQIKQRSEGMFISQEKYAKNLVKKFGLDQSQHKRTPAVTHAK 924

Query: 61   ITKDSIGIAVDHKLYKSMIVSLLYLTTSRSDIAYAVGICARYQSDPRISYLNAVKRIIKY 120
            ITKD +G  VDHKLY+SMI SLLYLTTSR DIAY VGICARYQSD R S+LNA+KRIIKY
Sbjct: 925  ITKDMVGTEVDHKLYRSMIGSLLYLTTSRPDIAYVVGICARYQSDSRTSHLNAIKRIIKY 984

Query: 121  VHGTTDFGILYSYNTSSELVGYCDADWAGSADDRKSTSGGCFFL 165
            VHGTTDFGILYSY+TSSELVGY +AD AGSADDRK TSGGCFFL
Sbjct: 985  VHGTTDFGILYSYDTSSELVGYYNADRAGSADDRKGTSGGCFFL 1028

[Close]

BLAST of Cmc08g0228441 vs. NCBI nr
Match: KAA0031683.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK04427.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 278.9 bits (712), Expect = 2.9e-71
Identity = 138/164 (84.15%), Postives = 148/164 (90.24%), Query Frame = 0


Query: 1   MKSEFEMSLVGELSCFLGLQIKQRSEGIFISQEKYAKNILKKFGLDQSQYKRTPTATHAK 60
           MKSEFEMSLVGELSCFLGLQIKQRSEG+FISQEKYAKN++KKFGL QSQYK+TP ATH K
Sbjct: 275 MKSEFEMSLVGELSCFLGLQIKQRSEGMFISQEKYAKNLVKKFGLYQSQYKKTPAATHTK 334

Query: 61  ITKDSIGIAVDHKLYKSMIVSLLYLTTSRSDIAYAVGICARYQSDPRISYLNAVKRIIKY 120
           ITKD+IG AVDHKLY+SMI SLLYL  S  DI YAVGIC RYQSDPR S+LNAVKRIIKY
Sbjct: 335 ITKDTIGTAVDHKLYRSMIGSLLYLIASIPDIDYAVGICVRYQSDPRTSHLNAVKRIIKY 394

Query: 121 VHGTTDFGILYSYNTSSELVGYCDADWAGSADDRKSTSGGCFFL 165
           VHGTTDF ILYSY+TSS+LVGYCDA W GSADDRK+T GGCFFL
Sbjct: 395 VHGTTDFRILYSYDTSSKLVGYCDAGWEGSADDRKNTFGGCFFL 438

[Close]

BLAST of Cmc08g0228441 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.1e-22
Identity = 58/164 (35.37%), Postives = 91/164 (55.49%), Query Frame = 0


Query: 1   MKSEFEMSLVGELSCFLGLQIKQRSEGIFISQEKYAKNILKKFGLDQSQYKRTPTATHAK 60
           + S F M  +G +  FLG+QIK    G+F+SQ KYA+ IL   G+   +   TP      
Sbjct: 27  LSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLPLKLN 86

Query: 61  ITKDSIGIAVDHKLYKSMIVSLLYLTTSRSDIAYAVGICARYQSDPRISYLNAVKRIIKY 120
            +  S     D   ++S++ +L YLT +R DI+YAV I  +   +P ++  + +KR+++Y
Sbjct: 87  -SSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRY 146

Query: 121 VHGTTDFGILYSYNTSSELVGYCDADWAGSADDRKSTSGGCFFL 165
           V GT   G+    N+   +  +CD+DWAG    R+ST+G C FL
Sbjct: 147 VKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFL 189

[Close]

BLAST of Cmc08g0228441 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.4e-20
Identity = 55/164 (33.54%), Postives = 89/164 (54.27%), Query Frame = 0


Query: 1    MKSEFEMSLVGELSCFLGLQIKQRSEGIFISQEKYAKNILKKFGLDQSQYKRTPTATHAK 60
            +   F +    +L  FLG++ K+  +G+ +SQ +Y  ++L +  +  ++   TP AT  K
Sbjct: 1154 LSQRFSVKEHEDLHYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPK 1213

Query: 61   ITKDSIGIAVDHKLYKSMIVSLLYLTTSRSDIAYAVGICARYQSDPRISYLNAVKRIIKY 120
            +T  S     D   Y+ ++ SL YL  +R D++YAV   ++Y   P   + NA+KR+++Y
Sbjct: 1214 LTLHSGTKLPDPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRY 1273

Query: 121  VHGTTDFGILYSYNTSSELVGYCDADWAGSADDRKSTSGGCFFL 165
            + GT D GI      +  L  Y DADWAG  DD  ST+G   +L
Sbjct: 1274 LAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYL 1317

[Close]

BLAST of Cmc08g0228441 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.0e-18
Identity = 58/171 (33.92%), Postives = 97/171 (56.73%), Query Frame = 0


Query: 1    MKSEFEMSLVGELSCFLGLQI--KQRSEGIFISQEKYAKNILKKFGLDQSQYKRTPTATH 60
            +   F+M  +G     LG++I  ++ S  +++SQEKY + +L++F +  ++   TP A H
Sbjct: 1029 LSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGH 1088

Query: 61   AKITKDSIGIAVDHK------LYKSMIVSLLY-LTTSRSDIAYAVGICARYQSDPRISYL 120
             K++K      V+ K       Y S + SL+Y +  +R DIA+AVG+ +R+  +P   + 
Sbjct: 1089 LKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHW 1148

Query: 121  NAVKRIIKYVHGTTDFGILYSYNTSSELVGYCDADWAGSADDRKSTSGGCF 163
             AVK I++Y+ GTT   + +   +   L GY DAD AG  D+RKS++G  F
Sbjct: 1149 EAVKWILRYLRGTTGDCLCFG-GSDPILKGYTDADMAGDIDNRKSSTGYLF 1198

[Close]

BLAST of Cmc08g0228441 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 94.4 bits (233), Expect = 1.3e-18
Identity = 55/166 (33.13%), Postives = 94/166 (56.63%), Query Frame = 0


Query: 1    MKSEFEMSLVGELSCFLGLQIKQRSEGIFISQEKYAKNILKKFGLDQSQYKRTPTATHAK 60
            +  +F M+ + E+  F+G++I+ + + I++SQ  Y K IL KF ++      TP    +K
Sbjct: 1108 LMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLP--SK 1167

Query: 61   ITKDSIGIAVD-HKLYKSMIVSLLY-LTTSRSDIAYAVGICARYQSDPRISYLNAVKRII 120
            I  + +    D +   +S+I  L+Y +  +R D+  AV I +RY S         +KR++
Sbjct: 1168 INYELLNSDEDCNTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVL 1227

Query: 121  KYVHGTTDFGILYSYNTSSE--LVGYCDADWAGSADDRKSTSGGCF 163
            +Y+ GT D  +++  N + E  ++GY D+DWAGS  DRKST+G  F
Sbjct: 1228 RYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLF 1271

[Close]

BLAST of Cmc08g0228441 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.3e-18
Identity = 53/153 (34.64%), Postives = 84/153 (54.90%), Query Frame = 0


Query: 12   ELSCFLGLQIKQRSEGIFISQEKYAKNILKKFGLDQSQYKRTPTATHAKITKDSIGIAVD 71
            EL  FLG++ K+   G+ +SQ +Y  ++L +  +  ++   TP A   K++  S     D
Sbjct: 1182 ELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTD 1241

Query: 72   HKLYKSMIVSLLYLTTSRSDIAYAVGICARYQSDPRISYLNAVKRIIKYVHGTTDFGILY 131
               Y+ ++ SL YL  +R DI+YAV   +++   P   +L A+KRI++Y+ GT + GI  
Sbjct: 1242 PTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFL 1301

Query: 132  SYNTSSELVGYCDADWAGSADDRKSTSGGCFFL 165
                +  L  Y DADWAG  DD  ST+G   +L
Sbjct: 1302 KKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYL 1334

[Close]

BLAST of Cmc08g0228441 vs. ExPASy TrEMBL
Match: A0A5A7SVD7 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold103G00620 PE=4 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 1.5e-86
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MKSEFEMSLVGELSCFLGLQIKQRSEGIFISQEKYAKNILKKFGLDQSQYKRTPTATHAK 60
           MKSEFEMSLVGELSCFLGLQIKQRSEGIFISQEKYAKNILKKFGLDQSQYKRTPTATHAK
Sbjct: 676 MKSEFEMSLVGELSCFLGLQIKQRSEGIFISQEKYAKNILKKFGLDQSQYKRTPTATHAK 735

Query: 61  ITKDSIGIAVDHKLYKSMIVSLLYLTTSRSDIAYAVGICARYQSDPRISYLNAVKRIIKY 120
           ITKDSIGIAVDHKLYKSMIVSLLYLTTSRSDIAYAVGICARYQSDPRISYLNAVKRIIKY
Sbjct: 736 ITKDSIGIAVDHKLYKSMIVSLLYLTTSRSDIAYAVGICARYQSDPRISYLNAVKRIIKY 795

Query: 121 VHGTTDFGILYSYNTSSELVGYCDADWAGSADDRKSTSGGCFFL 165
           VHGTTDFGILYSYNTSSELVGYCDADWAGSADDRKSTSGGCFFL
Sbjct: 796 VHGTTDFGILYSYNTSSELVGYCDADWAGSADDRKSTSGGCFFL 839

[Close]

BLAST of Cmc08g0228441 vs. ExPASy TrEMBL
Match: A0A5D3C0M9 (Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83G001770 PE=4 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 1.0e-82
Identity = 158/164 (96.34%), Postives = 162/164 (98.78%), Query Frame = 0


Query: 1   MKSEFEMSLVGELSCFLGLQIKQRSEGIFISQEKYAKNILKKFGLDQSQYKRTPTATHAK 60
           MKSEFEMSLVGELSCFLGLQIKQRSEGIFISQEKYAKNI+KKFGLDQSQYKRT TATHAK
Sbjct: 670 MKSEFEMSLVGELSCFLGLQIKQRSEGIFISQEKYAKNIVKKFGLDQSQYKRTSTATHAK 729

Query: 61  ITKDSIGIAVDHKLYKSMIVSLLYLTTSRSDIAYAVGICARYQSDPRISYLNAVKRIIKY 120
           ITKDSIGIAVDHKLYKSMIVSLLYLTTSRS+IAYAVGICA+YQSDPRIS+LNAVKRIIKY
Sbjct: 730 ITKDSIGIAVDHKLYKSMIVSLLYLTTSRSNIAYAVGICAQYQSDPRISHLNAVKRIIKY 789

Query: 121 VHGTTDFGILYSYNTSSELVGYCDADWAGSADDRKSTSGGCFFL 165
           VHGTTDF ILYSYNTSSELVGYCDADWAGSADDRKSTSGGCFFL
Sbjct: 790 VHGTTDFRILYSYNTSSELVGYCDADWAGSADDRKSTSGGCFFL 833

[Close]

BLAST of Cmc08g0228441 vs. ExPASy TrEMBL
Match: A0A5A7UF87 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G004260 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 2.3e-74
Identity = 142/164 (86.59%), Postives = 152/164 (92.68%), Query Frame = 0


Query: 1   MKSEFEMSLVGELSCFLGLQIKQRSEGIFISQEKYAKNILKKFGLDQSQYKRTPTATHAK 60
           M SEFEMSLVGELSCFLGLQIKQRSEG+F+SQEKYAKN++KKFGLDQSQYKRTP ATHAK
Sbjct: 614 MTSEFEMSLVGELSCFLGLQIKQRSEGMFMSQEKYAKNLVKKFGLDQSQYKRTPAATHAK 673

Query: 61  ITKDSIGIAVDHKLYKSMIVSLLYLTTSRSDIAYAVGICARYQSDPRISYLNAVKRIIKY 120
           ITKD++G AVDHKLY+SMI S LYL  SR DIAYAV ICARYQSDP  S+LNAVKRIIKY
Sbjct: 674 ITKDTVGTAVDHKLYRSMIGSHLYLKASRPDIAYAVEICARYQSDPCTSHLNAVKRIIKY 733

Query: 121 VHGTTDFGILYSYNTSSELVGYCDADWAGSADDRKSTSGGCFFL 165
           VHGTTDFGILYSY+T S+LVGYCDADWAGSADDRKSTSGGCFFL
Sbjct: 734 VHGTTDFGILYSYDTFSKLVGYCDADWAGSADDRKSTSGGCFFL 777

[Close]

BLAST of Cmc08g0228441 vs. ExPASy TrEMBL
Match: A0A5D3CS19 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G001080 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 3.3e-73
Identity = 141/164 (85.98%), Postives = 151/164 (92.07%), Query Frame = 0


Query: 1    MKSEFEMSLVGELSCFLGLQIKQRSEGIFISQEKYAKNILKKFGLDQSQYKRTPTATHAK 60
            MKSEFEMSLVGELSCFLGLQIKQRSEG+FISQEKYAKN++KKFGLDQSQ+KRTP  THAK
Sbjct: 865  MKSEFEMSLVGELSCFLGLQIKQRSEGMFISQEKYAKNLVKKFGLDQSQHKRTPAVTHAK 924

Query: 61   ITKDSIGIAVDHKLYKSMIVSLLYLTTSRSDIAYAVGICARYQSDPRISYLNAVKRIIKY 120
            ITKD +G  VDHKLY+SMI SLLYLTTSR DIAY VGICARYQSD R S+LNA+KRIIKY
Sbjct: 925  ITKDMVGTEVDHKLYRSMIGSLLYLTTSRPDIAYVVGICARYQSDSRTSHLNAIKRIIKY 984

Query: 121  VHGTTDFGILYSYNTSSELVGYCDADWAGSADDRKSTSGGCFFL 165
            VHGTTDFGILYSY+TSSELVGY +AD AGSADDRK TSGGCFFL
Sbjct: 985  VHGTTDFGILYSYDTSSELVGYYNADRAGSADDRKGTSGGCFFL 1028

[Close]

BLAST of Cmc08g0228441 vs. ExPASy TrEMBL
Match: A0A5D3BY43 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00230 PE=4 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 1.4e-71
Identity = 138/164 (84.15%), Postives = 148/164 (90.24%), Query Frame = 0


Query: 1   MKSEFEMSLVGELSCFLGLQIKQRSEGIFISQEKYAKNILKKFGLDQSQYKRTPTATHAK 60
           MKSEFEMSLVGELSCFLGLQIKQRSEG+FISQEKYAKN++KKFGL QSQYK+TP ATH K
Sbjct: 275 MKSEFEMSLVGELSCFLGLQIKQRSEGMFISQEKYAKNLVKKFGLYQSQYKKTPAATHTK 334

Query: 61  ITKDSIGIAVDHKLYKSMIVSLLYLTTSRSDIAYAVGICARYQSDPRISYLNAVKRIIKY 120
           ITKD+IG AVDHKLY+SMI SLLYL  S  DI YAVGIC RYQSDPR S+LNAVKRIIKY
Sbjct: 335 ITKDTIGTAVDHKLYRSMIGSLLYLIASIPDIDYAVGICVRYQSDPRTSHLNAVKRIIKY 394

Query: 121 VHGTTDFGILYSYNTSSELVGYCDADWAGSADDRKSTSGGCFFL 165
           VHGTTDF ILYSY+TSS+LVGYCDA W GSADDRK+T GGCFFL
Sbjct: 395 VHGTTDFRILYSYDTSSKLVGYCDAGWEGSADDRKNTFGGCFFL 438

[Close]

BLAST of Cmc08g0228441 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 107.8 bits (268), Expect = 8.2e-24
Identity = 58/164 (35.37%), Postives = 91/164 (55.49%), Query Frame = 0


Query: 1   MKSEFEMSLVGELSCFLGLQIKQRSEGIFISQEKYAKNILKKFGLDQSQYKRTPTATHAK 60
           + S F M  +G +  FLG+QIK    G+F+SQ KYA+ IL   G+   +   TP      
Sbjct: 27  LSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLPLKLN 86

Query: 61  ITKDSIGIAVDHKLYKSMIVSLLYLTTSRSDIAYAVGICARYQSDPRISYLNAVKRIIKY 120
            +  S     D   ++S++ +L YLT +R DI+YAV I  +   +P ++  + +KR+++Y
Sbjct: 87  -SSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRY 146

Query: 121 VHGTTDFGILYSYNTSSELVGYCDADWAGSADDRKSTSGGCFFL 165
           V GT   G+    N+   +  +CD+DWAG    R+ST+G C FL
Sbjct: 147 VKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFL 189

[Close]

BLAST of Cmc08g0228441 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 102.4 bits (254), Expect = 3.4e-22
Identity = 58/164 (35.37%), Postives = 91/164 (55.49%), Query Frame = 0


Query: 1   MKSEFEMSLVGELSCFLGLQIKQRSEGIFISQEKYAKNILKKFGLDQSQYKRTPTATHAK 60
           +KS F++  +G L  FLGL+I + + GI I Q KYA ++L + GL   +    P      
Sbjct: 304 LKSCFKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVT 363

Query: 61  ITKDSIGIAVDHKLYKSMIVSLLYLTTSRSDIAYAVGICARYQSDPRISYLNAVKRIIKY 120
            +  S G  VD K Y+ +I  L+YL  +R DI++AV   +++   PR+++  AV +I+ Y
Sbjct: 364 FSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHY 423

Query: 121 VHGTTDFGILYSYNTSSELVGYCDADWAGSADDRKSTSGGCFFL 165
           + GT   G+ YS     +L  + DA +    D R+ST+G C FL
Sbjct: 424 IKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFL 467

[Close]

BLAST of Cmc08g0228441 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 64.3 bits (155), Expect = 1.0e-10
Identity = 28/79 (35.44%), Postives = 47/79 (59.49%), Query Frame = 0


Query: 83  LYLTTSRSDIAYAVGICARYQSDPRISYLNAVKRIIKYVHGTTDFGILYSYNTSSELVGY 142
           +YLT +R D+ +AV   +++ S  R + + AV +++ YV GT   G+ YS  +  +L  +
Sbjct: 1   MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60

Query: 143 CDADWAGSADDRKSTSGGC 162
            D+DWA   D R+S +G C
Sbjct: 61  ADSDWASCPDTRRSVTGFC 79

The following BLAST results are available for this feature:

BLAST of Cmc08g0228441 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0034930.1	3.2e-86	100.00	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
TYK05471.1	2.1e-82	96.34	Copia protein [Cucumis melo var. makuwa]	[more]
KAA0054623.1	4.7e-74	86.59	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAA0054435.1	6.8e-73	85.98	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK14601.1 gag-pol polyprotein [...	[more]
KAA0031683.1	2.9e-71	84.15	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK04427.1 gag-pol polyprotein [...	[more]

BLAST of Cmc08g0228441 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P92519	1.1e-22	35.37	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9ZT94	1.4e-20	33.54	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P10978	1.0e-18	33.92	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.3e-18	33.13	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	1.3e-18	34.64	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

BLAST of Cmc08g0228441 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SVD7	1.5e-86	100.00	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5D3C0M9	1.0e-82	96.34	Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83G001770 ...	[more]
A0A5A7UF87	2.3e-74	86.59	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5D3CS19	3.3e-73	85.98	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G...	[more]
A0A5D3BY43	1.4e-71	84.15	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G...	[more]

BLAST of Cmc08g0228441 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00810.1	8.2e-24	35.37	DNA/RNA polymerases superfamily protein	[more]
AT4G23160.1	3.4e-22	35.37	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00240.1	1.0e-10	35.44	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 1..55 e-value: 2.7E-9 score: 37.0
None	No IPR available	PANTHER	PTHR11439:SF308	SUBFAMILY NOT NAMED	coord: 51..161
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 51..161

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0228441.1	Cmc08g0228441.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding