Cmc08g0228371 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0228371
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr08: 22507289 .. 22507675 (+)
RNA-Seq Expression	Cmc08g0228371
Synteny	Cmc08g0228371

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTTTGGCTTGACCAATACTCCTGCTGTATTTATGGATATGATGAACAGGGTGTTTAAGGATTTCTTAGACACTTTTGTTATAGTTTTTATCGATGATATCTTGGTTTACTCCAAGATAGAGGCTGAGCATAAGAAGCATTTGCATCAGGTTTTGGAGACTCTTCGAGCCAATAAGCTATATGCTAAGTTCTCTAAGTGTGAGTTCTTGCTAAAGAAGGTATCCTTTATTGGCCACGTAGTATCCAGTGAGAGAGTTTTGATAAACCCAGTGAAGATTGAAGCTGTTACTAGTTGGCCTCGACATCTACAGTTAGTGAAGTTCATAGTTTTCTGGGTTCAGGAGGTTATTACAGAAGGTTCATGGAAGATTTCGCTTGTATAG

mRNA sequence

ATGTCTTTTGGCTTGACCAATACTCCTGCTGTATTTATGGATATGATGAACAGGGTGTTTAAGGATTTCTTAGACACTTTTGTTATAGTTTTTATCGATGATATCTTGGTTTACTCCAAGATAGAGGCTGAGCATAAGAAGCATTTGCATCAGGTTTTGGAGACTCTTCGAGCCAATAAGCTATATGCTAAGTTCTCTAAGTGTGAGTTCTTGCTAAAGAAGGTATCCTTTATTGGCCACGTAGTATCCAGTGAGAGAGTTTTGATAAACCCAGTGAAGATTGAAGCTGTTACTAGTTGGCCTCGACATCTACAGTTAGTGAAGTTCATAGTTTTCTGGGTTCAGGAGGTTATTACAGAAGGTTCATGGAAGATTTCGCTTGTATAG

Coding sequence (CDS)

ATGTCTTTTGGCTTGACCAATACTCCTGCTGTATTTATGGATATGATGAACAGGGTGTTTAAGGATTTCTTAGACACTTTTGTTATAGTTTTTATCGATGATATCTTGGTTTACTCCAAGATAGAGGCTGAGCATAAGAAGCATTTGCATCAGGTTTTGGAGACTCTTCGAGCCAATAAGCTATATGCTAAGTTCTCTAAGTGTGAGTTCTTGCTAAAGAAGGTATCCTTTATTGGCCACGTAGTATCCAGTGAGAGAGTTTTGATAAACCCAGTGAAGATTGAAGCTGTTACTAGTTGGCCTCGACATCTACAGTTAGTGAAGTTCATAGTTTTCTGGGTTCAGGAGGTTATTACAGAAGGTTCATGGAAGATTTCGCTTGTATAG

Protein sequence

MSFGLTNTPAVFMDMMNRVFKDFLDTFVIVFIDDILVYSKIEAEHKKHLHQVLETLRANKLYAKFSKCEFLLKKVSFIGHVVSSERVLINPVKIEAVTSWPRHLQLVKFIVFWVQEVITEGSWKISLV

Homology

[Close]

BLAST of Cmc08g0228371 vs. NCBI nr
Match: KAA0045284.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 189.1 bits (479), Expect = 2.3e-44
Identity = 91/119 (76.47%), Postives = 107/119 (89.92%), Query Frame = 0


Query: 1   MSFGLTNTPAVFMDMMNRVFKDFLDTFVIVFIDDILVYSKIEAEHKKHLHQVLETLRANK 60
           MSFGLTN PAVFMD+MN VFKDFLD+F+IVFIDDIL+YSK EAEH++HLHQVLETLR+NK
Sbjct: 661 MSFGLTNAPAVFMDLMNMVFKDFLDSFIIVFIDDILIYSKTEAEHEEHLHQVLETLRSNK 720

Query: 61  LYAKFSKCEFLLKKVSFIGHVVSSERVLINPVKIEAVTSWPRHLQLVKFIVFWVQEVIT 120
           LYAKFSKCEF LKKV+F+GHVVSSE V ++P KIEAVT+WPR L+L +F+V WV +V T
Sbjct: 721 LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTNWPRRLRLARFVVSWVWQVTT 779

[Close]

BLAST of Cmc08g0228371 vs. NCBI nr
Match: KAA0036538.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 178.3 bits (451), Expect = 4.1e-41
Identity = 86/102 (84.31%), Postives = 96/102 (94.12%), Query Frame = 0


Query: 1   MSFGLTNTPAVFMDMMNRVFKDFLDTFVIVFIDDILVYSKIEAEHKKHLHQVLETLRANK 60
           MSFGLTN P VFMD+MNRVFKDFLD+FVIVFIDDIL+YSK EAEH+KHLHQVLETLRANK
Sbjct: 470 MSFGLTNAPTVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEKHLHQVLETLRANK 529

Query: 61  LYAKFSKCEFLLKKVSFIGHVVSSERVLINPVKIEAVTSWPR 103
           LYAKFSKCEF L+KV+F+GHVVSSERV ++P KIEAVT+WPR
Sbjct: 530 LYAKFSKCEFWLRKVTFLGHVVSSERVSVDPAKIEAVTNWPR 571

[Close]

BLAST of Cmc08g0228371 vs. NCBI nr
Match: KAA0042912.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 177.9 bits (450), Expect = 5.4e-41
Identity = 87/102 (85.29%), Postives = 95/102 (93.14%), Query Frame = 0


Query: 1   MSFGLTNTPAVFMDMMNRVFKDFLDTFVIVFIDDILVYSKIEAEHKKHLHQVLETLRANK 60
           MSFGLTN PAVFMD+MNRVFKDFLD FVIVFIDDIL+YSK EAEH+KHLHQVLETLRANK
Sbjct: 580 MSFGLTNAPAVFMDLMNRVFKDFLDAFVIVFIDDILIYSKTEAEHEKHLHQVLETLRANK 639

Query: 61  LYAKFSKCEFLLKKVSFIGHVVSSERVLINPVKIEAVTSWPR 103
           LYAKFSKCEF LKKV+F+GHVVSSE V ++P KIEAVT+WPR
Sbjct: 640 LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTNWPR 681

[Close]

BLAST of Cmc08g0228371 vs. NCBI nr
Match: KAA0053356.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 177.9 bits (450), Expect = 5.4e-41
Identity = 87/102 (85.29%), Postives = 96/102 (94.12%), Query Frame = 0


Query: 1   MSFGLTNTPAVFMDMMNRVFKDFLDTFVIVFIDDILVYSKIEAEHKKHLHQVLETLRANK 60
           MSFGLTN PAVFMD+MNRVFKDFLD+FVIVFIDDIL+YSK EAEH+KHLHQVL+TLRANK
Sbjct: 1   MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEKHLHQVLKTLRANK 60

Query: 61  LYAKFSKCEFLLKKVSFIGHVVSSERVLINPVKIEAVTSWPR 103
           LYAKFSKCEFLLKKV+F+ HVVSSE V ++P KIEAVTSWPR
Sbjct: 61  LYAKFSKCEFLLKKVTFLSHVVSSEGVSVDPAKIEAVTSWPR 102

[Close]

BLAST of Cmc08g0228371 vs. NCBI nr
Match: KAA0059723.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 177.6 bits (449), Expect = 7.0e-41
Identity = 86/102 (84.31%), Postives = 97/102 (95.10%), Query Frame = 0


Query: 1   MSFGLTNTPAVFMDMMNRVFKDFLDTFVIVFIDDILVYSKIEAEHKKHLHQVLETLRANK 60
           MSFGLTNTPAVFMD+MNRVFKDFLD+FVIVFIDDIL+YSK EAEH++HLHQVLETLRANK
Sbjct: 687 MSFGLTNTPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 746

Query: 61  LYAKFSKCEFLLKKVSFIGHVVSSERVLINPVKIEAVTSWPR 103
           LYAKFSKCEF L+KV+F+GHVVSSE V ++P KIEAVT+WPR
Sbjct: 747 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPR 788

[Close]

BLAST of Cmc08g0228371 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.5e-14
Identity = 37/101 (36.63%), Postives = 60/101 (59.41%), Query Frame = 0


Query: 1   MSFGLTNTPAVFMDMMNRVFKDFLDTFVIVFIDDILVYSKIEAEHKKHLHQVLETLRANK 60
           M FGL N PA F   MN + +  L+   +V++DDI+++S    EH   +  V   L    
Sbjct: 333 MPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADAN 392

Query: 61  LYAKFSKCEFLLKKVSFIGHVVSSERVLINPVKIEAVTSWP 102
           L  +  KCEFL K+ +F+GH+V+ + +  NP+K++A+ S+P
Sbjct: 393 LKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYP 433

[Close]

BLAST of Cmc08g0228371 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 7.6e-14
Identity = 40/101 (39.60%), Postives = 60/101 (59.41%), Query Frame = 0


Query: 1   MSFGLTNTPAVFMDMMNRVFKDFLDTFVIVFIDDILVYSKIEAEHKKHLHQVLETLRANK 60
           M FGL N PA F   MN + +  L+   +V++DDI+V+S    EH + L  V E L    
Sbjct: 334 MPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKAN 393

Query: 61  LYAKFSKCEFLLKKVSFIGHVVSSERVLINPVKIEAVTSWP 102
           L  +  KCEFL ++ +F+GHV++ + +  NP KIEA+  +P
Sbjct: 394 LKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYP 434

[Close]

BLAST of Cmc08g0228371 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 67.4 bits (163), Expect = 1.3e-10
Identity = 37/101 (36.63%), Postives = 56/101 (55.45%), Query Frame = 0


Query: 1   MSFGLTNTPAVFMDMMNRVFKDFLDTFVIVFIDDILVYSKIEAEHKKHLHQVLETLRANK 60
           M FGL N P+ F   M   F+D    FV V++DDIL++S+   EH KHL  VLE L+   
Sbjct: 718 MPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNEN 777

Query: 61  LYAKFSKCEFLLKKVSFIGHVVSSERVLINPVKIEAVTSWP 102
           L  K  KC+F  ++  F+G+ +  +++     K  A+  +P
Sbjct: 778 LIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFP 816

[Close]

BLAST of Cmc08g0228371 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 67.4 bits (163), Expect = 1.3e-10
Identity = 37/101 (36.63%), Postives = 56/101 (55.45%), Query Frame = 0


Query: 1   MSFGLTNTPAVFMDMMNRVFKDFLDTFVIVFIDDILVYSKIEAEHKKHLHQVLETLRANK 60
           M FGL N P+ F   M   F+D    FV V++DDIL++S+   EH KHL  VLE L+   
Sbjct: 744 MPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNEN 803

Query: 61  LYAKFSKCEFLLKKVSFIGHVVSSERVLINPVKIEAVTSWP 102
           L  K  KC+F  ++  F+G+ +  +++     K  A+  +P
Sbjct: 804 LIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFP 842

[Close]

BLAST of Cmc08g0228371 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.3e-10
Identity = 33/101 (32.67%), Postives = 59/101 (58.42%), Query Frame = 0


Query: 1   MSFGLTNTPAVFMDMMNRVFKDFLDTFVIVFIDDILVYSKIEAEHKKHLHQVLETLRANK 60
           + FGL N PA+F  M++ + ++ +     V+IDDI+V+S+    H K+L  VL +L    
Sbjct: 250 LPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKAN 309

Query: 61  LYAKFSKCEFLLKKVSFIGHVVSSERVLINPVKIEAVTSWP 102
           L     K  FL  +V F+G++V+++ +  +P K+ A++  P
Sbjct: 310 LQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMP 350

[Close]

BLAST of Cmc08g0228371 vs. ExPASy TrEMBL
Match: A0A5A7TQ85 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G00410 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 1.1e-44
Identity = 91/119 (76.47%), Postives = 107/119 (89.92%), Query Frame = 0


Query: 1   MSFGLTNTPAVFMDMMNRVFKDFLDTFVIVFIDDILVYSKIEAEHKKHLHQVLETLRANK 60
           MSFGLTN PAVFMD+MN VFKDFLD+F+IVFIDDIL+YSK EAEH++HLHQVLETLR+NK
Sbjct: 661 MSFGLTNAPAVFMDLMNMVFKDFLDSFIIVFIDDILIYSKTEAEHEEHLHQVLETLRSNK 720

Query: 61  LYAKFSKCEFLLKKVSFIGHVVSSERVLINPVKIEAVTSWPRHLQLVKFIVFWVQEVIT 120
           LYAKFSKCEF LKKV+F+GHVVSSE V ++P KIEAVT+WPR L+L +F+V WV +V T
Sbjct: 721 LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTNWPRRLRLARFVVSWVWQVTT 779

[Close]

BLAST of Cmc08g0228371 vs. ExPASy TrEMBL
Match: A0A5A7T165 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G00390 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 2.0e-41
Identity = 86/102 (84.31%), Postives = 96/102 (94.12%), Query Frame = 0


Query: 1   MSFGLTNTPAVFMDMMNRVFKDFLDTFVIVFIDDILVYSKIEAEHKKHLHQVLETLRANK 60
           MSFGLTN P VFMD+MNRVFKDFLD+FVIVFIDDIL+YSK EAEH+KHLHQVLETLRANK
Sbjct: 470 MSFGLTNAPTVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEKHLHQVLETLRANK 529

Query: 61  LYAKFSKCEFLLKKVSFIGHVVSSERVLINPVKIEAVTSWPR 103
           LYAKFSKCEF L+KV+F+GHVVSSERV ++P KIEAVT+WPR
Sbjct: 530 LYAKFSKCEFWLRKVTFLGHVVSSERVSVDPAKIEAVTNWPR 571

[Close]

BLAST of Cmc08g0228371 vs. ExPASy TrEMBL
Match: A0A5A7THM7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G004320 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.6e-41
Identity = 87/102 (85.29%), Postives = 95/102 (93.14%), Query Frame = 0


Query: 1   MSFGLTNTPAVFMDMMNRVFKDFLDTFVIVFIDDILVYSKIEAEHKKHLHQVLETLRANK 60
           MSFGLTN PAVFMD+MNRVFKDFLD FVIVFIDDIL+YSK EAEH+KHLHQVLETLRANK
Sbjct: 580 MSFGLTNAPAVFMDLMNRVFKDFLDAFVIVFIDDILIYSKTEAEHEKHLHQVLETLRANK 639

Query: 61  LYAKFSKCEFLLKKVSFIGHVVSSERVLINPVKIEAVTSWPR 103
           LYAKFSKCEF LKKV+F+GHVVSSE V ++P KIEAVT+WPR
Sbjct: 640 LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTNWPR 681

[Close]

BLAST of Cmc08g0228371 vs. ExPASy TrEMBL
Match: A0A5A7UGL2 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold428G00090 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.6e-41
Identity = 87/102 (85.29%), Postives = 96/102 (94.12%), Query Frame = 0


Query: 1   MSFGLTNTPAVFMDMMNRVFKDFLDTFVIVFIDDILVYSKIEAEHKKHLHQVLETLRANK 60
           MSFGLTN PAVFMD+MNRVFKDFLD+FVIVFIDDIL+YSK EAEH+KHLHQVL+TLRANK
Sbjct: 1   MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEKHLHQVLKTLRANK 60

Query: 61  LYAKFSKCEFLLKKVSFIGHVVSSERVLINPVKIEAVTSWPR 103
           LYAKFSKCEFLLKKV+F+ HVVSSE V ++P KIEAVTSWPR
Sbjct: 61  LYAKFSKCEFLLKKVTFLSHVVSSEGVSVDPAKIEAVTSWPR 102

[Close]

BLAST of Cmc08g0228371 vs. ExPASy TrEMBL
Match: A0A5A7UUX8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1395G00080 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 3.4e-41
Identity = 86/102 (84.31%), Postives = 97/102 (95.10%), Query Frame = 0


Query: 1   MSFGLTNTPAVFMDMMNRVFKDFLDTFVIVFIDDILVYSKIEAEHKKHLHQVLETLRANK 60
           MSFGLTNTPAVFMD+MNRVFKDFLD+FVIVFIDDIL+YSK EAEH++HLHQVLETLRANK
Sbjct: 687 MSFGLTNTPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 746

Query: 61  LYAKFSKCEFLLKKVSFIGHVVSSERVLINPVKIEAVTSWPR 103
           LYAKFSKCEF L+KV+F+GHVVSSE V ++P KIEAVT+WPR
Sbjct: 747 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPR 788

[Close]

BLAST of Cmc08g0228371 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 44.3 bits (103), Expect = 8.7e-05
Identity = 20/56 (35.71%), Postives = 33/56 (58.93%), Query Frame = 0


Query: 48  HLHQVLETLRANKLYAKFSKCEFLLKKVSFIG--HVVSSERVLINPVKIEAVTSWP 102
           HL  VL+    ++ YA   KC F   +++++G  H++S E V  +P K+EA+  WP
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWP 58

The following BLAST results are available for this feature:

BLAST of Cmc08g0228371 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0045284.1	2.3e-44	76.47	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0036538.1	4.1e-41	84.31	pol protein [Cucumis melo var. makuwa]	[more]
KAA0042912.1	5.4e-41	85.29	pol protein [Cucumis melo var. makuwa]	[more]
KAA0053356.1	5.4e-41	85.29	pol protein [Cucumis melo var. makuwa]	[more]
KAA0059723.1	7.0e-41	84.31	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc08g0228371 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	1.5e-14	36.63	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	7.6e-14	39.60	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q99315	1.3e-10	36.63	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	1.3e-10	36.63	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q8I7P9	2.3e-10	32.67	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]

BLAST of Cmc08g0228371 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TQ85	1.1e-44	76.47	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold31...	[more]
A0A5A7T165	2.0e-41	84.31	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19...	[more]
A0A5A7THM7	2.6e-41	85.29	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44...	[more]
A0A5A7UGL2	2.6e-41	85.29	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold428G00090 PE...	[more]
A0A5A7UUX8	3.4e-41	84.31	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13...	[more]

BLAST of Cmc08g0228371 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	8.7e-05	35.71	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 1..81 e-value: 2.3E-14 score: 53.5
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..82 score: 8.629629
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..89 e-value: 9.4E-32 score: 111.7
None	No IPR available	PANTHER	PTHR24559:SF345	SUBFAMILY NOT NAMED	coord: 17..103
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 17..103
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..82 e-value: 1.28033E-34 score: 116.156
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0228371.1	Cmc08g0228371.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding