Cmc08g0228361 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0228361
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty3/gypsy retrotransposon protein
Location	CMiso1.1chr08: 22450398 .. 22450919 (-)
RNA-Seq Expression	Cmc08g0228361
Synteny	Cmc08g0228361

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTAAAACCTGGGGGGATCAATATGAAGGATTCATAATTGAATGCAAAATAGTGGAAGTAACAAACAATGGAAAGGTAGAATTAAATAGTACTGAGGCAACTTTCACTGAGTTGGATCCTATTCATATTGTGTTAAAACAGTATGAAGACATCTTTGAGTGGCCAAAGAAGCTTCCTCCGAGGAGAGAAATTAAACATCACATTTATTTTAAGGAGAGTACCGATCCAATTAATGTGAGACCATATACATATGGTTATCATCAGAAGGAAGAAATGGAGAAATTAGTTGAAGAAATGTTAGCTTCAGAAGTCATGCGGCCAAGTAAAAGTCCTTTCACCAACCTGGTGCTTCTTGTTCAAAGGAAAAATGGTAGTTGGTGTTTTTGTGTGGACTATCGAGCAGTGAATAATGCTACTGTACTTGATAAGTTTTCAATTCCAGTGGTGGAGGAATTATTGGATGAGTTAAATGGAACTACATTGTTTTCAAAATTCAATCTAAAATATGATTACCATTAA

mRNA sequence

ATGTTTAAAACCTGGGGGGATCAATATGAAGGATTCATAATTGAATGCAAAATAGTGGAAGTAACAAACAATGGAAAGGTAGAATTAAATAGTACTGAGGCAACTTTCACTGAGTTGGATCCTATTCATATTGTGTTAAAACAGTATGAAGACATCTTTGAGTGGCCAAAGAAGCTTCCTCCGAGGAGAGAAATTAAACATCACATTTATTTTAAGGAGAGTACCGATCCAATTAATGTGAGACCATATACATATGGTTATCATCAGAAGGAAGAAATGGAGAAATTAGTTGAAGAAATGTTAGCTTCAGAAGTCATGCGGCCAAGTAAAAGTCCTTTCACCAACCTGGTGCTTCTTGTTCAAAGGAAAAATGGTAGTTGGTGTTTTTGTGTGGACTATCGAGCAGTGAATAATGCTACTGTACTTGATAAGTTTTCAATTCCAGTGGTGGAGGAATTATTGGATGAGTTAAATGGAACTACATTGTTTTCAAAATTCAATCTAAAATATGATTACCATTAA

Coding sequence (CDS)

ATGTTTAAAACCTGGGGGGATCAATATGAAGGATTCATAATTGAATGCAAAATAGTGGAAGTAACAAACAATGGAAAGGTAGAATTAAATAGTACTGAGGCAACTTTCACTGAGTTGGATCCTATTCATATTGTGTTAAAACAGTATGAAGACATCTTTGAGTGGCCAAAGAAGCTTCCTCCGAGGAGAGAAATTAAACATCACATTTATTTTAAGGAGAGTACCGATCCAATTAATGTGAGACCATATACATATGGTTATCATCAGAAGGAAGAAATGGAGAAATTAGTTGAAGAAATGTTAGCTTCAGAAGTCATGCGGCCAAGTAAAAGTCCTTTCACCAACCTGGTGCTTCTTGTTCAAAGGAAAAATGGTAGTTGGTGTTTTTGTGTGGACTATCGAGCAGTGAATAATGCTACTGTACTTGATAAGTTTTCAATTCCAGTGGTGGAGGAATTATTGGATGAGTTAAATGGAACTACATTGTTTTCAAAATTCAATCTAAAATATGATTACCATTAA

Protein sequence

MFKTWGDQYEGFIIECKIVEVTNNGKVELNSTEATFTELDPIHIVLKQYEDIFEWPKKLPPRREIKHHIYFKESTDPINVRPYTYGYHQKEEMEKLVEEMLASEVMRPSKSPFTNLVLLVQRKNGSWCFCVDYRAVNNATVLDKFSIPVVEELLDELNGTTLFSKFNLKYDYH

Homology

[Close]

BLAST of Cmc08g0228361 vs. NCBI nr
Match: KAA0044268.1 (ty3-gypsy retroelement transposase [Cucumis melo var. makuwa])

HSP 1 Score: 312.4 bits (799), Expect = 2.5e-81
Identity = 148/149 (99.33%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   MFKTWGDQYEGFIIECKIVEVTNNGKVELNSTEATFTELDPIHIVLKQYEDIFEWPKKLP 60
           MFKTWGDQYEGFIIEC+IVEVTNNGKVELNSTEATFTELDPIHIVLKQYEDIFEWPKKLP
Sbjct: 150 MFKTWGDQYEGFIIECRIVEVTNNGKVELNSTEATFTELDPIHIVLKQYEDIFEWPKKLP 209

Query: 61  PRREIKHHIYFKESTDPINVRPYTYGYHQKEEMEKLVEEMLASEVMRPSKSPFTNLVLLV 120
           PRREIKHHIYFKESTDPINVRPYTYGYHQKEEMEKLVEEMLASEVMRPSKSPFTNLVLLV
Sbjct: 210 PRREIKHHIYFKESTDPINVRPYTYGYHQKEEMEKLVEEMLASEVMRPSKSPFTNLVLLV 269

Query: 121 QRKNGSWCFCVDYRAVNNATVLDKFSIPV 150
           QRKNGSWCFCVDYRAVNNATVLDKFSIPV
Sbjct: 270 QRKNGSWCFCVDYRAVNNATVLDKFSIPV 298

[Close]

BLAST of Cmc08g0228361 vs. NCBI nr
Match: KAA0050450.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 284.3 bits (726), Expect = 7.2e-73
Identity = 135/173 (78.03%), Postives = 152/173 (87.86%), Query Frame = 0


Query: 1   MFKTWGDQYEGFIIECKIVEVTNNGKVELNSTEATFTELDPIHIVLKQYEDIFEWPKKLP 60
           MFKTWGDQ EGF+IEC+IVEVTNN K ELNSTE TFTELD +HIVLKQ+EDIFEWP+KLP
Sbjct: 96  MFKTWGDQDEGFLIECRIVEVTNNEKAELNSTEVTFTELDLVHIVLKQHEDIFEWPEKLP 155

Query: 61  PRREIKHHIYFKESTDPINVRPYTYGYHQKEEMEKLVEEMLASEVMRPSKSPFTNLVLLV 120
           PRREI+HHI+ KE TDPINVRPY YGYH KEEMEKLVEEMLAS V+ PSKSPF++ VLLV
Sbjct: 156 PRREIEHHIHLKEGTDPINVRPYRYGYHHKEEMEKLVEEMLASGVIWPSKSPFSSPVLLV 215

Query: 121 QRKNGSWCFCVDYRAVNNATVLDKFSIPVVEELLDELNGTTLFSKFNLKYDYH 174
           ++K+GSW FCVDYRA+NNATV DKF IP+V EL DELNG TLFSK ++K  YH
Sbjct: 216 KKKDGSWPFCVDYRAMNNATVPDKFPIPMVAELFDELNGATLFSKIDMKSRYH 268

[Close]

BLAST of Cmc08g0228361 vs. NCBI nr
Match: KAA0055970.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 257.3 bits (656), Expect = 9.4e-65
Identity = 123/173 (71.10%), Postives = 143/173 (82.66%), Query Frame = 0


Query: 1   MFKTWGDQYEGFIIECKIVEVTNNGKVELNSTEATFTELDPIHIVLKQYEDIFEWPKKLP 60
           MFKTW DQ EGF IEC+ VEV N+ K E+ + +A   +++PIH+VLKQYED+FEWPKKL 
Sbjct: 1   MFKTWEDQDEGFPIECRTVEVKNSDKAEITNVDAIVNDVNPIHVVLKQYEDVFEWPKKLL 60

Query: 61  PRREIKHHIYFKESTDPINVRPYTYGYHQKEEMEKLVEEMLASEVMRPSKSPFTNLVLLV 120
           PRREI+HHI+ KE TDPINVRPY YGYHQKEEMEKLVEEM AS  + PSKSPF++ VLLV
Sbjct: 61  PRREIEHHIHLKEGTDPINVRPYRYGYHQKEEMEKLVEEMFASGAIGPSKSPFSSPVLLV 120

Query: 121 QRKNGSWCFCVDYRAVNNATVLDKFSIPVVEELLDELNGTTLFSKFNLKYDYH 174
           ++K+GS  FCVDY AVNNATV DKFSIPVVEEL +ELNG TLFSK +LK  YH
Sbjct: 121 KKKDGSCRFCVDYHAVNNATVPDKFSIPVVEELFNELNGATLFSKIDLKSRYH 173

[Close]

BLAST of Cmc08g0228361 vs. NCBI nr
Match: TYK31571.1 (Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 241.5 bits (615), Expect = 5.4e-60
Identity = 111/167 (66.47%), Postives = 141/167 (84.43%), Query Frame = 0


Query: 7   DQYEGFIIECKIVEVTNNGKVELNSTEATFTELDPIHIVLKQYEDIFEWPKKLPPRREIK 66
           +Q EG+++EC+++++ N+ K E    +A+  E +P+H++LKQ+ED+FEWP+KL PRREI+
Sbjct: 108 EQDEGYLVECRVMKIMNSEKKEQQWIDASVVETNPVHMMLKQFEDVFEWPEKLLPRREIE 167

Query: 67  HHIYFKESTDPINVRPYTYGYHQKEEMEKLVEEMLASEVMRPSKSPFTNLVLLVQRKNGS 126
           HHI+ K+ TDPINVR Y YGYHQKEEMEKLVEEML   V+RPSKSPF++LVLLV++K+GS
Sbjct: 168 HHIHLKDGTDPINVRLYIYGYHQKEEMEKLVEEMLIFGVIRPSKSPFSSLVLLVKKKDGS 227

Query: 127 WCFCVDYRAVNNATVLDKFSIPVVEELLDELNGTTLFSKFNLKYDYH 174
           W FCVDYRAVNNATV DKFSIPV+EEL DELNG TLFSK +LK  YH
Sbjct: 228 WRFCVDYRAVNNATVPDKFSIPVMEELFDELNGATLFSKIDLKSGYH 274

[Close]

BLAST of Cmc08g0228361 vs. NCBI nr
Match: KAA0048762.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 241.5 bits (615), Expect = 5.4e-60
Identity = 111/167 (66.47%), Postives = 141/167 (84.43%), Query Frame = 0


Query: 7   DQYEGFIIECKIVEVTNNGKVELNSTEATFTELDPIHIVLKQYEDIFEWPKKLPPRREIK 66
           +Q EG+++EC+++++ N+ K E    +A+  E +P+H++LKQ+ED+FEWP+KL PRREI+
Sbjct: 108 EQDEGYLVECRVMKIMNSEKKEQQWIDASVVETNPVHMMLKQFEDVFEWPEKLLPRREIE 167

Query: 67  HHIYFKESTDPINVRPYTYGYHQKEEMEKLVEEMLASEVMRPSKSPFTNLVLLVQRKNGS 126
           HHI+ K+ TDPINVR Y YGYHQKEEMEKLVEEML   V+RPSKSPF++LVLLV++K+GS
Sbjct: 168 HHIHLKDGTDPINVRLYIYGYHQKEEMEKLVEEMLIFGVIRPSKSPFSSLVLLVKKKDGS 227

Query: 127 WCFCVDYRAVNNATVLDKFSIPVVEELLDELNGTTLFSKFNLKYDYH 174
           W FCVDYRAVNNATV DKFSIPV+EEL DELNG TLFSK +LK  YH
Sbjct: 228 WRFCVDYRAVNNATVPDKFSIPVMEELFDELNGATLFSKIDLKSGYH 274

[Close]

BLAST of Cmc08g0228361 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 82.8 bits (203), Expect = 4.2e-15
Identity = 49/150 (32.67%), Postives = 83/150 (55.33%), Query Frame = 0


Query: 30  NSTEATFTELDPIHIVLKQYEDIFEWPKKLPPRR------EIKHHIYFKESTDPINVRPY 89
           +S + TF  L P+ +  K Y +I      LPPR        +KH I  K       ++PY
Sbjct: 547 HSNKDTFCTL-PVWLQQK-YREIIR--NDLPPRPADINNIPVKHDIEIKPGARLPRLQPY 606

Query: 90  TYGYHQKEEMEKLVEEMLASEVMRPSKSPFTNLVLLVQRKNGSWCFCVDYRAVNNATVLD 149
                 ++E+ K+V+++L ++ + PSKSP ++ V+LV +K+G++  CVDYR +N AT+ D
Sbjct: 607 HVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISD 666

Query: 150 KFSIPVVEELLDELNGTTLFSKFNLKYDYH 174
            F +P ++ LL  +    +F+  +L   YH
Sbjct: 667 PFPLPRIDNLLSRIGNAQIFTTLDLHSGYH 692

[Close]

BLAST of Cmc08g0228361 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 82.8 bits (203), Expect = 4.2e-15
Identity = 49/150 (32.67%), Postives = 83/150 (55.33%), Query Frame = 0


Query: 30  NSTEATFTELDPIHIVLKQYEDIFEWPKKLPPRR------EIKHHIYFKESTDPINVRPY 89
           +S + TF  L P+ +  K Y +I      LPPR        +KH I  K       ++PY
Sbjct: 573 HSNKDTFCTL-PVWLQQK-YREIIR--NDLPPRPADINNIPVKHDIEIKPGARLPRLQPY 632

Query: 90  TYGYHQKEEMEKLVEEMLASEVMRPSKSPFTNLVLLVQRKNGSWCFCVDYRAVNNATVLD 149
                 ++E+ K+V+++L ++ + PSKSP ++ V+LV +K+G++  CVDYR +N AT+ D
Sbjct: 633 HVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISD 692

Query: 150 KFSIPVVEELLDELNGTTLFSKFNLKYDYH 174
            F +P ++ LL  +    +F+  +L   YH
Sbjct: 693 PFPLPRIDNLLSRIGNAQIFTTLDLHSGYH 718

[Close]

BLAST of Cmc08g0228361 vs. ExPASy Swiss-Prot
Match: P10394 (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.8e-10
Identity = 40/160 (25.00%), Postives = 79/160 (49.38%), Query Frame = 0


Query: 23  NNGKVELNSTEATFTEL--DPIHIVLKQYEDIFEWPKK-LPPRREIKHHIYFKESTDPIN 82
           +  K  L+  +  F EL    +  +  +Y DIF    + +      K  +  K+  +P+ 
Sbjct: 258 HRNKTVLSQLKKNFPELFKSQLENICSEYIDIFALESEPITVNNLYKQQLRLKDD-EPVY 317

Query: 83  VRPYTYGYHQKEEMEKLVEEMLASEVMRPSKSPFTNLVLLVQRKNG------SWCFCVDY 142
            + Y   + Q EE++  V++++  +++ PS S + + +LLV +K+        W   +DY
Sbjct: 318 TKNYRSPHSQVEEIQAQVQKLIKDKIVEPSVSQYNSPLLLVPKKSSPNSDKKKWRLVIDY 377

Query: 143 RAVNNATVLDKFSIPVVEELLDELNGTTLFSKFNLKYDYH 174
           R +N   + DKF +P ++++LD+L     FS  +L   +H
Sbjct: 378 RQINKKLLADKFPLPRIDDILDQLGRAKYFSCLDLMSGFH 416

[Close]

BLAST of Cmc08g0228361 vs. ExPASy Swiss-Prot
Match: P03554 (Enzymatic polyprotein OS=Cauliflower mosaic virus (strain Strasbourg) OX=10648 GN=ORF V PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.8e-10
Identity = 37/109 (33.94%), Postives = 62/109 (56.88%), Query Frame = 0


Query: 65  IKHHIYFKESTDPINVRPYTYGYHQKEEMEKLVEEMLASEVMRPSKSPFTNLVLLV---- 124
           +K  I   + +  I V+P  Y    +EE +K ++E+L  +V++PSKSP      LV    
Sbjct: 234 MKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEA 293

Query: 125 QRKNGSWCFCVDYRAVNNATVLDKFSIPVVEELLDELNGTTLFSKFNLK 170
           +++ G     V+Y+A+N ATV D +++P  +ELL  + G  +FS F+ K
Sbjct: 294 EKRRGKKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCK 342

[Close]

BLAST of Cmc08g0228361 vs. ExPASy Swiss-Prot
Match: P03555 (Enzymatic polyprotein OS=Cauliflower mosaic virus (strain CM-1841) OX=10644 GN=ORF V PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.4e-10
Identity = 36/109 (33.03%), Postives = 62/109 (56.88%), Query Frame = 0


Query: 65  IKHHIYFKESTDPINVRPYTYGYHQKEEMEKLVEEMLASEVMRPSKSPFTNLVLLV---- 124
           +K  I   + +  I V+P  Y    +EE +K ++E+L  +V++PSKSP      LV    
Sbjct: 234 MKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEA 293

Query: 125 QRKNGSWCFCVDYRAVNNATVLDKFSIPVVEELLDELNGTTLFSKFNLK 170
           +++ G     V+Y+A+N AT+ D +++P  +ELL  + G  +FS F+ K
Sbjct: 294 EKRRGKKRMVVNYKAMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCK 342

[Close]

BLAST of Cmc08g0228361 vs. ExPASy TrEMBL
Match: A0A5A7TN13 (Ty3-gypsy retroelement transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2741G00270 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 1.2e-81
Identity = 148/149 (99.33%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   MFKTWGDQYEGFIIECKIVEVTNNGKVELNSTEATFTELDPIHIVLKQYEDIFEWPKKLP 60
           MFKTWGDQYEGFIIEC+IVEVTNNGKVELNSTEATFTELDPIHIVLKQYEDIFEWPKKLP
Sbjct: 150 MFKTWGDQYEGFIIECRIVEVTNNGKVELNSTEATFTELDPIHIVLKQYEDIFEWPKKLP 209

Query: 61  PRREIKHHIYFKESTDPINVRPYTYGYHQKEEMEKLVEEMLASEVMRPSKSPFTNLVLLV 120
           PRREIKHHIYFKESTDPINVRPYTYGYHQKEEMEKLVEEMLASEVMRPSKSPFTNLVLLV
Sbjct: 210 PRREIKHHIYFKESTDPINVRPYTYGYHQKEEMEKLVEEMLASEVMRPSKSPFTNLVLLV 269

Query: 121 QRKNGSWCFCVDYRAVNNATVLDKFSIPV 150
           QRKNGSWCFCVDYRAVNNATVLDKFSIPV
Sbjct: 270 QRKNGSWCFCVDYRAVNNATVLDKFSIPV 298

[Close]

BLAST of Cmc08g0228361 vs. ExPASy TrEMBL
Match: A0A5A7U5F9 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G00570 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 3.5e-73
Identity = 135/173 (78.03%), Postives = 152/173 (87.86%), Query Frame = 0


Query: 1   MFKTWGDQYEGFIIECKIVEVTNNGKVELNSTEATFTELDPIHIVLKQYEDIFEWPKKLP 60
           MFKTWGDQ EGF+IEC+IVEVTNN K ELNSTE TFTELD +HIVLKQ+EDIFEWP+KLP
Sbjct: 96  MFKTWGDQDEGFLIECRIVEVTNNEKAELNSTEVTFTELDLVHIVLKQHEDIFEWPEKLP 155

Query: 61  PRREIKHHIYFKESTDPINVRPYTYGYHQKEEMEKLVEEMLASEVMRPSKSPFTNLVLLV 120
           PRREI+HHI+ KE TDPINVRPY YGYH KEEMEKLVEEMLAS V+ PSKSPF++ VLLV
Sbjct: 156 PRREIEHHIHLKEGTDPINVRPYRYGYHHKEEMEKLVEEMLASGVIWPSKSPFSSPVLLV 215

Query: 121 QRKNGSWCFCVDYRAVNNATVLDKFSIPVVEELLDELNGTTLFSKFNLKYDYH 174
           ++K+GSW FCVDYRA+NNATV DKF IP+V EL DELNG TLFSK ++K  YH
Sbjct: 216 KKKDGSWPFCVDYRAMNNATVPDKFPIPMVAELFDELNGATLFSKIDMKSRYH 268

[Close]

BLAST of Cmc08g0228361 vs. ExPASy TrEMBL
Match: A0A5A7ULE3 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G001030 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 4.6e-65
Identity = 123/173 (71.10%), Postives = 143/173 (82.66%), Query Frame = 0


Query: 1   MFKTWGDQYEGFIIECKIVEVTNNGKVELNSTEATFTELDPIHIVLKQYEDIFEWPKKLP 60
           MFKTW DQ EGF IEC+ VEV N+ K E+ + +A   +++PIH+VLKQYED+FEWPKKL 
Sbjct: 1   MFKTWEDQDEGFPIECRTVEVKNSDKAEITNVDAIVNDVNPIHVVLKQYEDVFEWPKKLL 60

Query: 61  PRREIKHHIYFKESTDPINVRPYTYGYHQKEEMEKLVEEMLASEVMRPSKSPFTNLVLLV 120
           PRREI+HHI+ KE TDPINVRPY YGYHQKEEMEKLVEEM AS  + PSKSPF++ VLLV
Sbjct: 61  PRREIEHHIHLKEGTDPINVRPYRYGYHQKEEMEKLVEEMFASGAIGPSKSPFSSPVLLV 120

Query: 121 QRKNGSWCFCVDYRAVNNATVLDKFSIPVVEELLDELNGTTLFSKFNLKYDYH 174
           ++K+GS  FCVDY AVNNATV DKFSIPVVEEL +ELNG TLFSK +LK  YH
Sbjct: 121 KKKDGSCRFCVDYHAVNNATVPDKFSIPVVEELFNELNGATLFSKIDLKSRYH 173

[Close]

BLAST of Cmc08g0228361 vs. ExPASy TrEMBL
Match: A0A5A7TYW5 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43G00700 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 2.6e-60
Identity = 111/167 (66.47%), Postives = 141/167 (84.43%), Query Frame = 0


Query: 7   DQYEGFIIECKIVEVTNNGKVELNSTEATFTELDPIHIVLKQYEDIFEWPKKLPPRREIK 66
           +Q EG+++EC+++++ N+ K E    +A+  E +P+H++LKQ+ED+FEWP+KL PRREI+
Sbjct: 108 EQDEGYLVECRVMKIMNSEKKEQQWIDASVVETNPVHMMLKQFEDVFEWPEKLLPRREIE 167

Query: 67  HHIYFKESTDPINVRPYTYGYHQKEEMEKLVEEMLASEVMRPSKSPFTNLVLLVQRKNGS 126
           HHI+ K+ TDPINVR Y YGYHQKEEMEKLVEEML   V+RPSKSPF++LVLLV++K+GS
Sbjct: 168 HHIHLKDGTDPINVRLYIYGYHQKEEMEKLVEEMLIFGVIRPSKSPFSSLVLLVKKKDGS 227

Query: 127 WCFCVDYRAVNNATVLDKFSIPVVEELLDELNGTTLFSKFNLKYDYH 174
           W FCVDYRAVNNATV DKFSIPV+EEL DELNG TLFSK +LK  YH
Sbjct: 228 WRFCVDYRAVNNATVPDKFSIPVMEELFDELNGATLFSKIDLKSGYH 274

[Close]

BLAST of Cmc08g0228361 vs. ExPASy TrEMBL
Match: A0A5D3E7K8 (Transposon Tf2-9 polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold172G00650 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 2.6e-60
Identity = 111/167 (66.47%), Postives = 141/167 (84.43%), Query Frame = 0


Query: 7   DQYEGFIIECKIVEVTNNGKVELNSTEATFTELDPIHIVLKQYEDIFEWPKKLPPRREIK 66
           +Q EG+++EC+++++ N+ K E    +A+  E +P+H++LKQ+ED+FEWP+KL PRREI+
Sbjct: 108 EQDEGYLVECRVMKIMNSEKKEQQWIDASVVETNPVHMMLKQFEDVFEWPEKLLPRREIE 167

Query: 67  HHIYFKESTDPINVRPYTYGYHQKEEMEKLVEEMLASEVMRPSKSPFTNLVLLVQRKNGS 126
           HHI+ K+ TDPINVR Y YGYHQKEEMEKLVEEML   V+RPSKSPF++LVLLV++K+GS
Sbjct: 168 HHIHLKDGTDPINVRLYIYGYHQKEEMEKLVEEMLIFGVIRPSKSPFSSLVLLVKKKDGS 227

Query: 127 WCFCVDYRAVNNATVLDKFSIPVVEELLDELNGTTLFSKFNLKYDYH 174
           W FCVDYRAVNNATV DKFSIPV+EEL DELNG TLFSK +LK  YH
Sbjct: 228 WRFCVDYRAVNNATVPDKFSIPVMEELFDELNGATLFSKIDLKSGYH 274

The following BLAST results are available for this feature:

BLAST of Cmc08g0228361 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044268.1	2.5e-81	99.33	ty3-gypsy retroelement transposase [Cucumis melo var. makuwa]	[more]
KAA0050450.1	7.2e-73	78.03	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0055970.1	9.4e-65	71.10	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK31571.1	5.4e-60	66.47	Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa]	[more]
KAA0048762.1	5.4e-60	66.47	Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc08g0228361 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	4.2e-15	32.67	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	4.2e-15	32.67	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P10394	1.8e-10	25.00	Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaste...	[more]
P03554	1.8e-10	33.94	Enzymatic polyprotein OS=Cauliflower mosaic virus (strain Strasbourg) OX=10648 G...	[more]
P03555	2.4e-10	33.03	Enzymatic polyprotein OS=Cauliflower mosaic virus (strain CM-1841) OX=10644 GN=O...	[more]

BLAST of Cmc08g0228361 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TN13	1.2e-81	99.33	Ty3-gypsy retroelement transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C...	[more]
A0A5A7U5F9	3.5e-73	78.03	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7ULE3	4.6e-65	71.10	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7TYW5	2.6e-60	66.47	Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3E7K8	2.6e-60	66.47	Transposon Tf2-9 polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]

BLAST of Cmc08g0228361 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 145..172 e-value: 1.5E-30 score: 108.1
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 65..173 e-value: 1.5E-30 score: 108.1
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 41..173
None	No IPR available	PANTHER	PTHR24559:SF319	SUBFAMILY NOT NAMED	coord: 41..173
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 46..173

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0228361.1	Cmc08g0228361.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098869	cellular oxidant detoxification
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0004601	peroxidase activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity