Cmc08g0228221 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0228221
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr08: 21968986 .. 21970020 (+)
RNA-Seq Expression	Cmc08g0228221
Synteny	Cmc08g0228221

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTCTCGCTTGTCCTCCTTCCATTCCTCCTTCTCTAGTCCTCAACCATTTTTCACCGATACCTCTGTTGAACTTTTTCCTCTCTCTGAATCCACTCTTGATACTGAGCTTGCTCAATCTGCACCTACTTCTGCAAACTCAAACCAATCGTCCATCTCTGATTATGGTCCTGAACCTACTCCAGACACCCCTCCTCGTCGTTCTACTCAGGTAAGAGAACCTCTCATCCATCTCCAAGATTATCACTGATTTTCCACTATTGTTTTCCTTGTTGAACCTACCTCTTATCAAGAGGCTAGTACTGACCCTTTATGGCAGAAAGCGATGAATGATGAATTACAGGCTCTTGACAAGATACACACTTGGGACTATGTTGACTTACCTCCCGGCAAAAAACTCATTGGCTGCAAGTGGATCTACAAGATCAAGACTCACTCTGATGACACTATTGAGCATTATAAAGCCCGTTTTGTTGCAAAAGGATATTTGCAAGAATATGGTATTGACTATGAAGAAACATTTGCTCATGTGGCTCGGATGACATCTGTTCGAAGTTTGTTAGCTGTTTCTGCTGCCAAGCAATGGCCTCTCTTTCAGATGGATGTCAAAAATGCTTTCCTTAATGGGACTCTTTTTGAAGAAGTCTATATGCAACCTCCTCCTGGTACTTCTCCTCCTCCTCACAAGGTATGCCTCCTGCGTCGTGCATTATATGGTTTGAAACAGGCTCCACGAACTTGGTTTGCCATATTTAGCTCTACCATCACTCAACTTGGATTTTCTTCTAGTCCTCATGATACTGCACTCTTTACTCGTCACACACCCCAGGGTATTGTTCTTCTTCTCCTTTATGTTGATGACATTATTATCACTGGTAATGATTCACAGGACATATCTGATCTCCAACATTATCTTAGTCAATATTTTGAGATGAAAGACCTTGGGTCTCTCAACTACTTTCTTGGTCTTGAAGTCTCTCGACGCTCAGATGGGTATTTCTTACTGACTCCAACACAGCTTCGACACCATTAG

mRNA sequence

ATGTTCTCTCGCTTGTCCTCCTTCCATTCCTCCTTCTCTAGTCCTCAACCATTTTTCACCGATACCTCTGTTGAACTTTTTCCTCTCTCTGAATCCACTCTTGATACTGAGCTTGCTCAATCTGCACCTACTTCTGCAAACTCAAACCAATCGTCCATCTCTGATTATGGTCCTGAACCTACTCCAGACACCCCTCCTCGTCGTTCTACTCAGAAAGCGATGAATGATGAATTACAGGCTCTTGACAAGATACACACTTGGGACTATGTTGACTTACCTCCCGGCAAAAAACTCATTGGCTGCAAGTGGATCTACAAGATCAAGACTCACTCTGATGACACTATTGAGCATTATAAAGCCCGTTTTGTTGCAAAAGGATATTTGCAAGAATATGGTATTGACTATGAAGAAACATTTGCTCATGTGGCTCGGATGACATCTGTTCGAAGTTTGTTAGCTGTTTCTGCTGCCAAGCAATGGCCTCTCTTTCAGATGGATGTCAAAAATGCTTTCCTTAATGGGACTCTTTTTGAAGAAGTCTATATGCAACCTCCTCCTGGTACTTCTCCTCCTCCTCACAAGGTATGCCTCCTGCGTCGTGCATTATATGGTTTGAAACAGGCTCCACGAACTTGGTTTGCCATATTTAGCTCTACCATCACTCAACTTGGATTTTCTTCTAGTCCTCATGATACTGCACTCTTTACTCGTCACACACCCCAGGGTATTGTTCTTCTTCTCCTTTATGTTGATGACATTATTATCACTGGTAATGATTCACAGGACATATCTGATCTCCAACATTATCTTAGTCAATATTTTGAGATGAAAGACCTTGGGTCTCTCAACTACTTTCTTGGTCTTGAAGTCTCTCGACGCTCAGATGGGTATTTCTTACTGACTCCAACACAGCTTCGACACCATTAG

Coding sequence (CDS)

ATGTTCTCTCGCTTGTCCTCCTTCCATTCCTCCTTCTCTAGTCCTCAACCATTTTTCACCGATACCTCTGTTGAACTTTTTCCTCTCTCTGAATCCACTCTTGATACTGAGCTTGCTCAATCTGCACCTACTTCTGCAAACTCAAACCAATCGTCCATCTCTGATTATGGTCCTGAACCTACTCCAGACACCCCTCCTCGTCGTTCTACTCAGAAAGCGATGAATGATGAATTACAGGCTCTTGACAAGATACACACTTGGGACTATGTTGACTTACCTCCCGGCAAAAAACTCATTGGCTGCAAGTGGATCTACAAGATCAAGACTCACTCTGATGACACTATTGAGCATTATAAAGCCCGTTTTGTTGCAAAAGGATATTTGCAAGAATATGGTATTGACTATGAAGAAACATTTGCTCATGTGGCTCGGATGACATCTGTTCGAAGTTTGTTAGCTGTTTCTGCTGCCAAGCAATGGCCTCTCTTTCAGATGGATGTCAAAAATGCTTTCCTTAATGGGACTCTTTTTGAAGAAGTCTATATGCAACCTCCTCCTGGTACTTCTCCTCCTCCTCACAAGGTATGCCTCCTGCGTCGTGCATTATATGGTTTGAAACAGGCTCCACGAACTTGGTTTGCCATATTTAGCTCTACCATCACTCAACTTGGATTTTCTTCTAGTCCTCATGATACTGCACTCTTTACTCGTCACACACCCCAGGGTATTGTTCTTCTTCTCCTTTATGTTGATGACATTATTATCACTGGTAATGATTCACAGGACATATCTGATCTCCAACATTATCTTAGTCAATATTTTGAGATGAAAGACCTTGGGTCTCTCAACTACTTTCTTGGTCTTGAAGTCTCTCGACGCTCAGATGGGTATTTCTTACTGACTCCAACACAGCTTCGACACCATTAG

Protein sequence

MFSRLSSFHSSFSSPQPFFTDTSVELFPLSESTLDTELAQSAPTSANSNQSSISDYGPEPTPDTPPRRSTQKAMNDELQALDKIHTWDYVDLPPGKKLIGCKWIYKIKTHSDDTIEHYKARFVAKGYLQEYGIDYEETFAHVARMTSVRSLLAVSAAKQWPLFQMDVKNAFLNGTLFEEVYMQPPPGTSPPPHKVCLLRRALYGLKQAPRTWFAIFSSTITQLGFSSSPHDTALFTRHTPQGIVLLLLYVDDIIITGNDSQDISDLQHYLSQYFEMKDLGSLNYFLGLEVSRRSDGYFLLTPTQLRHH

Homology

[Close]

BLAST of Cmc08g0228221 vs. NCBI nr
Match: KAA0041341.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 617.5 bits (1591), Expect = 6.4e-173
Identity = 308/316 (97.47%), Postives = 308/316 (97.47%), Query Frame = 0


Query: 1   MFSRLSSFHSSFSSPQPFFTDTSVELFPLSESTLDTELAQSAPTSANSNQSSISDYGPEP 60
           MFSRLSSFHSSFSSPQPFFTDTSVELFPLSESTLDTELAQSAPTSANSNQSSISDYGPEP
Sbjct: 476 MFSRLSSFHSSFSSPQPFFTDTSVELFPLSESTLDTELAQSAPTSANSNQSSISDYGPEP 535

Query: 61  TPDTPPRRST--------QKAMNDELQALDKIHTWDYVDLPPGKKLIGCKWIYKIKTHSD 120
           TPDTPPRRST        QKAMNDELQALDKIHTWDYVDLPPGKKLIGCKWIYKIKTHSD
Sbjct: 536 TPDTPPRRSTQASTDPLWQKAMNDELQALDKIHTWDYVDLPPGKKLIGCKWIYKIKTHSD 595

Query: 121 DTIEHYKARFVAKGYLQEYGIDYEETFAHVARMTSVRSLLAVSAAKQWPLFQMDVKNAFL 180
           DTIEHYKARFVAKGYLQEYGIDYEETFAHVARMTSVRSLLAVSAAKQWPLFQMDVKNAFL
Sbjct: 596 DTIEHYKARFVAKGYLQEYGIDYEETFAHVARMTSVRSLLAVSAAKQWPLFQMDVKNAFL 655

Query: 181 NGTLFEEVYMQPPPGTSPPPHKVCLLRRALYGLKQAPRTWFAIFSSTITQLGFSSSPHDT 240
           NGTLFEEVYMQPPPGTSPPPHKVCLLRRALYGLKQAPRTWFAIFSSTITQLGFSSSPHDT
Sbjct: 656 NGTLFEEVYMQPPPGTSPPPHKVCLLRRALYGLKQAPRTWFAIFSSTITQLGFSSSPHDT 715

Query: 241 ALFTRHTPQGIVLLLLYVDDIIITGNDSQDISDLQHYLSQYFEMKDLGSLNYFLGLEVSR 300
           ALFTRHTPQGIVLLLLYVDDIIITGNDSQDISDLQHYLSQYFEMKDLGSLNYFLGLEVSR
Sbjct: 716 ALFTRHTPQGIVLLLLYVDDIIITGNDSQDISDLQHYLSQYFEMKDLGSLNYFLGLEVSR 775

Query: 301 RSDGYFLLTPTQLRHH 309
           RSDGYFLLTPTQLRHH
Sbjct: 776 RSDGYFLLTPTQLRHH 791

[Close]

BLAST of Cmc08g0228221 vs. NCBI nr
Match: KAA0064888.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 510.0 bits (1312), Expect = 1.4e-140
Identity = 263/335 (78.51%), Postives = 274/335 (81.79%), Query Frame = 0


Query: 1   MFSRLSSFHSSFSSPQPFFTDTSVELFPLSESTLDTELAQSAPTSANSNQSSISDYGPEP 60
           MFSRLSSFH+SFSSPQPFFTDTS++LFP SES +  ELAQSAPTSA SNQSSIS   PEP
Sbjct: 175 MFSRLSSFHTSFSSPQPFFTDTSIDLFPPSESPIGNELAQSAPTSATSNQSSISGGSPEP 234

Query: 61  TPDTPPRRST------------------------------------QKAMNDELQALDKI 120
           TPDTPPRRST                                    QKAMNDELQAL+K 
Sbjct: 235 TPDTPPRRSTRVREPPIHLQDYHCFSTIISLVEPTSYQEASINPVWQKAMNDELQALEKT 294

Query: 121 HTWDYVDLPPGKKLIGCKWIYKIKTHSDDTIEHYKARFVAKGYLQEYGIDYEETFAHVAR 180
           HTWDYVDLPPGK+ IGCKWIYKIKTHSD TIE YKAR VAKGY QEYGIDYEETFA VAR
Sbjct: 295 HTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVAR 354

Query: 181 MTSVRSLLAVSAAKQWPLFQMDVKNAFLNGTLFEEVYMQPPPGTSPPPHKVCLLRRALYG 240
           MTSVRSLLAV+AAKQWPL QMDVKNAFLNGTL EEVYM+PP GTS PPHKVCLLRRALYG
Sbjct: 355 MTSVRSLLAVAAAKQWPLLQMDVKNAFLNGTLSEEVYMKPPSGTSSPPHKVCLLRRALYG 414

Query: 241 LKQAPRTWFAIFSSTITQLGFSSSPHDTALFTRHTPQGIVLLLLYVDDIIITGNDSQDIS 300
           LKQAPR WFA FSSTITQLGF+SSPHDTALFTRHTPQGIVLLLLYVDD+IITGND Q IS
Sbjct: 415 LKQAPRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLYVDDMIITGNDPQAIS 474

[Close]

BLAST of Cmc08g0228221 vs. NCBI nr
Match: TYK21532.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 508.1 bits (1307), Expect = 5.5e-140
Identity = 261/335 (77.91%), Postives = 275/335 (82.09%), Query Frame = 0


Query: 1   MFSRLSSFHSSFSSPQPFFTDTSVELFPLSESTLDTELAQSAPTSANSNQSSISDYGPEP 60
           MFSRLSSFH+SFSSPQ FFTDTS++LFPL EST D ELAQSAPTSA S+QSSISD  P+P
Sbjct: 574 MFSRLSSFHTSFSSPQSFFTDTSIDLFPLPESTPDNELAQSAPTSATSDQSSISDGNPDP 633

Query: 61  TPDTPPRRST------------------------------------QKAMNDELQALDKI 120
           +PD PPRRST                                    QKAMNDELQAL+K 
Sbjct: 634 SPDIPPRRSTRVRAPPSHLQDYHCFSTIVSLIEPTSYQEASTDPLWQKAMNDELQALEKT 693

Query: 121 HTWDYVDLPPGKKLIGCKWIYKIKTHSDDTIEHYKARFVAKGYLQEYGIDYEETFAHVAR 180
           HTWDYVDLPPGK+ IGCKWIYKIKTHSD TIE YKAR VAKGY QE+GIDYEETFA VAR
Sbjct: 694 HTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEFGIDYEETFAPVAR 753

Query: 181 MTSVRSLLAVSAAKQWPLFQMDVKNAFLNGTLFEEVYMQPPPGTSPPPHKVCLLRRALYG 240
           MTSVRSLLAV+AAKQWPL QMDVKNAFLNGTL EEVYM+PPPGTS PPHKVCLLRRALYG
Sbjct: 754 MTSVRSLLAVAAAKQWPLLQMDVKNAFLNGTLSEEVYMKPPPGTSSPPHKVCLLRRALYG 813

Query: 241 LKQAPRTWFAIFSSTITQLGFSSSPHDTALFTRHTPQGIVLLLLYVDDIIITGNDSQDIS 300
           LKQAPR WFA FSSTITQLGF+SSPHDTALFTRHTPQGIVLLLLYVDD+IITGND Q IS
Sbjct: 814 LKQAPRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLYVDDMIITGNDPQAIS 873

[Close]

BLAST of Cmc08g0228221 vs. NCBI nr
Match: TYK19656.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 506.9 bits (1304), Expect = 1.2e-139
Identity = 261/335 (77.91%), Postives = 274/335 (81.79%), Query Frame = 0


Query: 1    MFSRLSSFHSSFSSPQPFFTDTSVELFPLSESTLDTELAQSAPTSANSNQSSISDYGPEP 60
            MFSRLSSFH+SFSSPQ FFTDTS++LFPLSEST   ELAQSAPTSA S+QSSISD  P+P
Sbjct: 734  MFSRLSSFHASFSSPQSFFTDTSIDLFPLSESTPGNELAQSAPTSATSDQSSISDGNPDP 793

Query: 61   TPDTPPRRST------------------------------------QKAMNDELQALDKI 120
             PD PPRRST                                    QKAMNDELQAL+K+
Sbjct: 794  PPDIPPRRSTRVREPPIHLQDYHCFSTIVSLIEPTSYQEASTDPLWQKAMNDELQALEKM 853

Query: 121  HTWDYVDLPPGKKLIGCKWIYKIKTHSDDTIEHYKARFVAKGYLQEYGIDYEETFAHVAR 180
            HTWDYVDLPPGK+ IGCKWIYKIKTHSD TIE YKAR VAKGY QEYGIDYEETFA VAR
Sbjct: 854  HTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVAR 913

Query: 181  MTSVRSLLAVSAAKQWPLFQMDVKNAFLNGTLFEEVYMQPPPGTSPPPHKVCLLRRALYG 240
            MTSVRSLLAV+AAKQWPL QMDVKNAFLNGTL EEVYM+PPPGTS PPHKVCLLRRALYG
Sbjct: 914  MTSVRSLLAVAAAKQWPLLQMDVKNAFLNGTLSEEVYMKPPPGTSSPPHKVCLLRRALYG 973

Query: 241  LKQAPRTWFAIFSSTITQLGFSSSPHDTALFTRHTPQGIVLLLLYVDDIIITGNDSQDIS 300
            LKQAPR WFA FSSTITQLGF+SSPHDTALFTRHTPQGIVLLLLYVDD+IITGND   IS
Sbjct: 974  LKQAPRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLYVDDMIITGNDPHAIS 1033

[Close]

BLAST of Cmc08g0228221 vs. NCBI nr
Match: KAA0037745.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 506.9 bits (1304), Expect = 1.2e-139
Identity = 261/335 (77.91%), Postives = 274/335 (81.79%), Query Frame = 0


Query: 1    MFSRLSSFHSSFSSPQPFFTDTSVELFPLSESTLDTELAQSAPTSANSNQSSISDYGPEP 60
            MFSRLSSFH+SFSSPQ FFTDTS++LFPLSEST   ELAQSAPTSA S+QSSISD  P+P
Sbjct: 734  MFSRLSSFHASFSSPQSFFTDTSIDLFPLSESTPGNELAQSAPTSATSDQSSISDGNPDP 793

Query: 61   TPDTPPRRST------------------------------------QKAMNDELQALDKI 120
             PD PPRRST                                    QKAMNDELQAL+K+
Sbjct: 794  PPDIPPRRSTRVREPPIHLQDYHCFSTIVSLIEPTSYQEASTDPLWQKAMNDELQALEKM 853

Query: 121  HTWDYVDLPPGKKLIGCKWIYKIKTHSDDTIEHYKARFVAKGYLQEYGIDYEETFAHVAR 180
            HTWDYVDLPPGK+ IGCKWIYKIKTHSD TIE YKAR VAKGY QEYGIDYEETFA VAR
Sbjct: 854  HTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVAR 913

Query: 181  MTSVRSLLAVSAAKQWPLFQMDVKNAFLNGTLFEEVYMQPPPGTSPPPHKVCLLRRALYG 240
            MTSVRSLLAV+AAKQWPL QMDVKNAFLNGTL EEVYM+PPPGTS PPHKVCLLRRALYG
Sbjct: 914  MTSVRSLLAVAAAKQWPLLQMDVKNAFLNGTLSEEVYMKPPPGTSSPPHKVCLLRRALYG 973

Query: 241  LKQAPRTWFAIFSSTITQLGFSSSPHDTALFTRHTPQGIVLLLLYVDDIIITGNDSQDIS 300
            LKQAPR WFA FSSTITQLGF+SSPHDTALFTRHTPQGIVLLLLYVDD+IITGND   IS
Sbjct: 974  LKQAPRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLYVDDMIITGNDPHAIS 1033

[Close]

BLAST of Cmc08g0228221 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.3e-54
Identity = 109/232 (46.98%), Postives = 146/232 (62.93%), Query Frame = 0


Query: 71   QKAMNDELQALDKIHTWDYVDLPPGK-KLIGCKWIYKIKTHSDDTIEHYKARFVAKGYLQ 130
            + AM  E+ A    HTWD V  PP    ++GC+WI+  K +SD ++  YKAR VAKGY Q
Sbjct: 969  RNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQ 1028

Query: 131  EYGIDYEETFAHVARMTSVRSLLAVSAAKQWPLFQMDVKNAFLNGTLFEEVYMQPPPG-- 190
              G+DY ETF+ V + TS+R +L V+  + WP+ Q+DV NAFL GTL ++VYM  PPG  
Sbjct: 1029 RPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFI 1088

Query: 191  TSPPPHKVCLLRRALYGLKQAPRTWFAIFSSTITQLGFSSSPHDTALFTRHTPQGIVLLL 250
                P+ VC LR+ALYGLKQAPR W+    + +  +GF +S  DT+LF     + IV +L
Sbjct: 1089 DKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYML 1148

Query: 251  LYVDDIIITGNDSQDISDLQHYLSQYFEMKDLGSLNYFLGLEVSRRSDGYFL 300
            +YVDDI+ITGND   + +    LSQ F +KD   L+YFLG+E  R   G  L
Sbjct: 1149 VYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHL 1200

[Close]

BLAST of Cmc08g0228221 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 8.1e-54
Identity = 107/232 (46.12%), Postives = 146/232 (62.93%), Query Frame = 0


Query: 71   QKAMNDELQALDKIHTWDYV-DLPPGKKLIGCKWIYKIKTHSDDTIEHYKARFVAKGYLQ 130
            ++AM  E+ A    HTWD V   PP   ++GC+WI+  K +SD ++  YKAR VAKGY Q
Sbjct: 952  RQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQ 1011

Query: 131  EYGIDYEETFAHVARMTSVRSLLAVSAAKQWPLFQMDVKNAFLNGTLFEEVYMQPPPG-- 190
              G+DY ETF+ V + TS+R +L V+  + WP+ Q+DV NAFL GTL +EVYM  PPG  
Sbjct: 1012 RPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFV 1071

Query: 191  TSPPPHKVCLLRRALYGLKQAPRTWFAIFSSTITQLGFSSSPHDTALFTRHTPQGIVLLL 250
                P  VC LR+A+YGLKQAPR W+    + +  +GF +S  DT+LF     + I+ +L
Sbjct: 1072 DKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQRGRSIIYML 1131

Query: 251  LYVDDIIITGNDSQDISDLQHYLSQYFEMKDLGSLNYFLGLEVSRRSDGYFL 300
            +YVDDI+ITGND+  +      LSQ F +K+   L+YFLG+E  R   G  L
Sbjct: 1132 VYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDLHYFLGIEAKRVPQGLHL 1183

[Close]

BLAST of Cmc08g0228221 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 6.7e-48
Identity = 96/231 (41.56%), Postives = 147/231 (63.64%), Query Frame = 0


Query: 65   PPRRSTQKAMNDELQALDKIHTWDYVDLPPGKKLIGCKWIYKIKTHSDDTIEHYKARFVA 124
            P +    KAM +E+++L K  T+  V+LP GK+ + CKW++K+K   D  +  YKAR V 
Sbjct: 821  PEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVV 880

Query: 125  KGYLQEYGIDYEETFAHVARMTSVRSLLAVSAAKQWPLFQMDVKNAFLNGTLFEEVYMQP 184
            KG+ Q+ GID++E F+ V +MTS+R++L+++A+    + Q+DVK AFL+G L EE+YM+ 
Sbjct: 881  KGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQ 940

Query: 185  PPG--TSPPPHKVCLLRRALYGLKQAPRTWFAIFSSTITQLGFSSSPHDTAL-FTRHTPQ 244
            P G   +   H VC L ++LYGLKQAPR W+  F S +    +  +  D  + F R +  
Sbjct: 941  PEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSEN 1000

Query: 245  GIVLLLLYVDDIIITGNDSQDISDLQHYLSQYFEMKDLGSLNYFLGLEVSR 293
              ++LLLYVDD++I G D   I+ L+  LS+ F+MKDLG     LG+++ R
Sbjct: 1001 NFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVR 1051

[Close]

BLAST of Cmc08g0228221 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 178.7 bits (452), Expect = 1.0e-43
Identity = 89/235 (37.87%), Postives = 137/235 (58.30%), Query Frame = 0


Query: 67   RRSTQKAMNDELQALDKIHTWDYVDLPPGKKLIGCKWIYKIKTHSDDTIEHYKARFVAKG 126
            + S ++A+N EL A    +TW     P  K ++  +W++ +K +       YKAR VA+G
Sbjct: 903  KSSWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARG 962

Query: 127  YLQEYGIDYEETFAHVARMTSVRSLLAVSAAKQWPLFQMDVKNAFLNGTLFEEVYMQPPP 186
            + Q+Y IDYEETFA VAR++S R +L++       + QMDVK AFLNGTL EE+YM+ P 
Sbjct: 963  FTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQ 1022

Query: 187  GTSPPPHKVCLLRRALYGLKQAPRTWFAIFSSTITQLGFSSSPHDTALF--TRHTPQGIV 246
            G S     VC L +A+YGLKQA R WF +F   + +  F +S  D  ++   +      +
Sbjct: 1023 GISCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENI 1082

Query: 247  LLLLYVDDIIITGNDSQDISDLQHYLSQYFEMKDLGSLNYFLGLEVSRRSDGYFL 300
             +LLYVDD++I   D   +++ + YL + F M DL  + +F+G+ +  + D  +L
Sbjct: 1083 YVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYL 1137

[Close]

BLAST of Cmc08g0228221 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 92.8 bits (229), Expect = 7.2e-18
Identity = 48/139 (34.53%), Postives = 78/139 (56.12%), Query Frame = 0


Query: 165 MDVKNAFLNGTLFEEVYMQPPPG--TSPPPHKVCLLRRALYGLKQAPRTWFAIFSSTITQ 224
           MDV  AFLN T+ E +Y++ PPG      P  V  L   +YGLKQAP  W    ++T+ +
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 225 LGFSSSPHDTALFTRHTPQGIVLLLLYVDDIIITGNDSQDISDLQHYLSQYFEMKDLGSL 284
           +GF     +  L+ R T  G + + +YVDD+++     +    ++  L++ + MKDLG +
Sbjct: 61  IGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120

Query: 285 NYFLGLEVSRRSDGYFLLT 302
           + FLGL + + S+G   L+
Sbjct: 121 DKFLGLNIHQSSNGDITLS 139

[Close]

BLAST of Cmc08g0228221 vs. ExPASy TrEMBL
Match: A0A5A7TI53 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G003520 PE=4 SV=1)

HSP 1 Score: 617.5 bits (1591), Expect = 3.1e-173
Identity = 308/316 (97.47%), Postives = 308/316 (97.47%), Query Frame = 0


Query: 1   MFSRLSSFHSSFSSPQPFFTDTSVELFPLSESTLDTELAQSAPTSANSNQSSISDYGPEP 60
           MFSRLSSFHSSFSSPQPFFTDTSVELFPLSESTLDTELAQSAPTSANSNQSSISDYGPEP
Sbjct: 476 MFSRLSSFHSSFSSPQPFFTDTSVELFPLSESTLDTELAQSAPTSANSNQSSISDYGPEP 535

Query: 61  TPDTPPRRST--------QKAMNDELQALDKIHTWDYVDLPPGKKLIGCKWIYKIKTHSD 120
           TPDTPPRRST        QKAMNDELQALDKIHTWDYVDLPPGKKLIGCKWIYKIKTHSD
Sbjct: 536 TPDTPPRRSTQASTDPLWQKAMNDELQALDKIHTWDYVDLPPGKKLIGCKWIYKIKTHSD 595

Query: 121 DTIEHYKARFVAKGYLQEYGIDYEETFAHVARMTSVRSLLAVSAAKQWPLFQMDVKNAFL 180
           DTIEHYKARFVAKGYLQEYGIDYEETFAHVARMTSVRSLLAVSAAKQWPLFQMDVKNAFL
Sbjct: 596 DTIEHYKARFVAKGYLQEYGIDYEETFAHVARMTSVRSLLAVSAAKQWPLFQMDVKNAFL 655

Query: 181 NGTLFEEVYMQPPPGTSPPPHKVCLLRRALYGLKQAPRTWFAIFSSTITQLGFSSSPHDT 240
           NGTLFEEVYMQPPPGTSPPPHKVCLLRRALYGLKQAPRTWFAIFSSTITQLGFSSSPHDT
Sbjct: 656 NGTLFEEVYMQPPPGTSPPPHKVCLLRRALYGLKQAPRTWFAIFSSTITQLGFSSSPHDT 715

Query: 241 ALFTRHTPQGIVLLLLYVDDIIITGNDSQDISDLQHYLSQYFEMKDLGSLNYFLGLEVSR 300
           ALFTRHTPQGIVLLLLYVDDIIITGNDSQDISDLQHYLSQYFEMKDLGSLNYFLGLEVSR
Sbjct: 716 ALFTRHTPQGIVLLLLYVDDIIITGNDSQDISDLQHYLSQYFEMKDLGSLNYFLGLEVSR 775

Query: 301 RSDGYFLLTPTQLRHH 309
           RSDGYFLLTPTQLRHH
Sbjct: 776 RSDGYFLLTPTQLRHH 791

[Close]

BLAST of Cmc08g0228221 vs. ExPASy TrEMBL
Match: A0A5A7VBA1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G002020 PE=4 SV=1)

HSP 1 Score: 510.0 bits (1312), Expect = 7.0e-141
Identity = 263/335 (78.51%), Postives = 274/335 (81.79%), Query Frame = 0


Query: 1   MFSRLSSFHSSFSSPQPFFTDTSVELFPLSESTLDTELAQSAPTSANSNQSSISDYGPEP 60
           MFSRLSSFH+SFSSPQPFFTDTS++LFP SES +  ELAQSAPTSA SNQSSIS   PEP
Sbjct: 175 MFSRLSSFHTSFSSPQPFFTDTSIDLFPPSESPIGNELAQSAPTSATSNQSSISGGSPEP 234

Query: 61  TPDTPPRRST------------------------------------QKAMNDELQALDKI 120
           TPDTPPRRST                                    QKAMNDELQAL+K 
Sbjct: 235 TPDTPPRRSTRVREPPIHLQDYHCFSTIISLVEPTSYQEASINPVWQKAMNDELQALEKT 294

Query: 121 HTWDYVDLPPGKKLIGCKWIYKIKTHSDDTIEHYKARFVAKGYLQEYGIDYEETFAHVAR 180
           HTWDYVDLPPGK+ IGCKWIYKIKTHSD TIE YKAR VAKGY QEYGIDYEETFA VAR
Sbjct: 295 HTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVAR 354

Query: 181 MTSVRSLLAVSAAKQWPLFQMDVKNAFLNGTLFEEVYMQPPPGTSPPPHKVCLLRRALYG 240
           MTSVRSLLAV+AAKQWPL QMDVKNAFLNGTL EEVYM+PP GTS PPHKVCLLRRALYG
Sbjct: 355 MTSVRSLLAVAAAKQWPLLQMDVKNAFLNGTLSEEVYMKPPSGTSSPPHKVCLLRRALYG 414

Query: 241 LKQAPRTWFAIFSSTITQLGFSSSPHDTALFTRHTPQGIVLLLLYVDDIIITGNDSQDIS 300
           LKQAPR WFA FSSTITQLGF+SSPHDTALFTRHTPQGIVLLLLYVDD+IITGND Q IS
Sbjct: 415 LKQAPRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLYVDDMIITGNDPQAIS 474

[Close]

BLAST of Cmc08g0228221 vs. ExPASy TrEMBL
Match: A0A5D3DD70 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold275G00150 PE=4 SV=1)

HSP 1 Score: 508.1 bits (1307), Expect = 2.6e-140
Identity = 261/335 (77.91%), Postives = 275/335 (82.09%), Query Frame = 0


Query: 1   MFSRLSSFHSSFSSPQPFFTDTSVELFPLSESTLDTELAQSAPTSANSNQSSISDYGPEP 60
           MFSRLSSFH+SFSSPQ FFTDTS++LFPL EST D ELAQSAPTSA S+QSSISD  P+P
Sbjct: 574 MFSRLSSFHTSFSSPQSFFTDTSIDLFPLPESTPDNELAQSAPTSATSDQSSISDGNPDP 633

Query: 61  TPDTPPRRST------------------------------------QKAMNDELQALDKI 120
           +PD PPRRST                                    QKAMNDELQAL+K 
Sbjct: 634 SPDIPPRRSTRVRAPPSHLQDYHCFSTIVSLIEPTSYQEASTDPLWQKAMNDELQALEKT 693

Query: 121 HTWDYVDLPPGKKLIGCKWIYKIKTHSDDTIEHYKARFVAKGYLQEYGIDYEETFAHVAR 180
           HTWDYVDLPPGK+ IGCKWIYKIKTHSD TIE YKAR VAKGY QE+GIDYEETFA VAR
Sbjct: 694 HTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEFGIDYEETFAPVAR 753

Query: 181 MTSVRSLLAVSAAKQWPLFQMDVKNAFLNGTLFEEVYMQPPPGTSPPPHKVCLLRRALYG 240
           MTSVRSLLAV+AAKQWPL QMDVKNAFLNGTL EEVYM+PPPGTS PPHKVCLLRRALYG
Sbjct: 754 MTSVRSLLAVAAAKQWPLLQMDVKNAFLNGTLSEEVYMKPPPGTSSPPHKVCLLRRALYG 813

Query: 241 LKQAPRTWFAIFSSTITQLGFSSSPHDTALFTRHTPQGIVLLLLYVDDIIITGNDSQDIS 300
           LKQAPR WFA FSSTITQLGF+SSPHDTALFTRHTPQGIVLLLLYVDD+IITGND Q IS
Sbjct: 814 LKQAPRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLYVDDMIITGNDPQAIS 873

[Close]

BLAST of Cmc08g0228221 vs. ExPASy TrEMBL
Match: A0A5A7VIT8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1017G00050 PE=4 SV=1)

HSP 1 Score: 506.9 bits (1304), Expect = 5.9e-140
Identity = 261/335 (77.91%), Postives = 274/335 (81.79%), Query Frame = 0


Query: 1    MFSRLSSFHSSFSSPQPFFTDTSVELFPLSESTLDTELAQSAPTSANSNQSSISDYGPEP 60
            MFSRLSSFH+SFSSPQ FFTDTS++LFPLSEST   ELAQSAPTSA S+QSSISD  P+P
Sbjct: 734  MFSRLSSFHASFSSPQSFFTDTSIDLFPLSESTPGNELAQSAPTSATSDQSSISDGNPDP 793

Query: 61   TPDTPPRRST------------------------------------QKAMNDELQALDKI 120
             PD PPRRST                                    QKAMNDELQAL+K+
Sbjct: 794  PPDIPPRRSTRVREPPIHLQDYHCFSTIVSLIEPTSYQEASTDPLWQKAMNDELQALEKM 853

Query: 121  HTWDYVDLPPGKKLIGCKWIYKIKTHSDDTIEHYKARFVAKGYLQEYGIDYEETFAHVAR 180
            HTWDYVDLPPGK+ IGCKWIYKIKTHSD TIE YKAR VAKGY QEYGIDYEETFA VAR
Sbjct: 854  HTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVAR 913

Query: 181  MTSVRSLLAVSAAKQWPLFQMDVKNAFLNGTLFEEVYMQPPPGTSPPPHKVCLLRRALYG 240
            MTSVRSLLAV+AAKQWPL QMDVKNAFLNGTL EEVYM+PPPGTS PPHKVCLLRRALYG
Sbjct: 914  MTSVRSLLAVAAAKQWPLLQMDVKNAFLNGTLSEEVYMKPPPGTSSPPHKVCLLRRALYG 973

Query: 241  LKQAPRTWFAIFSSTITQLGFSSSPHDTALFTRHTPQGIVLLLLYVDDIIITGNDSQDIS 300
            LKQAPR WFA FSSTITQLGF+SSPHDTALFTRHTPQGIVLLLLYVDD+IITGND   IS
Sbjct: 974  LKQAPRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLYVDDMIITGNDPHAIS 1033

[Close]

BLAST of Cmc08g0228221 vs. ExPASy TrEMBL
Match: A0A5D3D7V8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00480 PE=4 SV=1)

HSP 1 Score: 506.9 bits (1304), Expect = 5.9e-140
Identity = 261/335 (77.91%), Postives = 274/335 (81.79%), Query Frame = 0


Query: 1    MFSRLSSFHSSFSSPQPFFTDTSVELFPLSESTLDTELAQSAPTSANSNQSSISDYGPEP 60
            MFSRLSSFH+SFSSPQ FFTDTS++LFPLSEST   ELAQSAPTSA S+QSSISD  P+P
Sbjct: 734  MFSRLSSFHASFSSPQSFFTDTSIDLFPLSESTPGNELAQSAPTSATSDQSSISDGNPDP 793

Query: 61   TPDTPPRRST------------------------------------QKAMNDELQALDKI 120
             PD PPRRST                                    QKAMNDELQAL+K+
Sbjct: 794  PPDIPPRRSTRVREPPIHLQDYHCFSTIVSLIEPTSYQEASTDPLWQKAMNDELQALEKM 853

Query: 121  HTWDYVDLPPGKKLIGCKWIYKIKTHSDDTIEHYKARFVAKGYLQEYGIDYEETFAHVAR 180
            HTWDYVDLPPGK+ IGCKWIYKIKTHSD TIE YKAR VAKGY QEYGIDYEETFA VAR
Sbjct: 854  HTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVAR 913

Query: 181  MTSVRSLLAVSAAKQWPLFQMDVKNAFLNGTLFEEVYMQPPPGTSPPPHKVCLLRRALYG 240
            MTSVRSLLAV+AAKQWPL QMDVKNAFLNGTL EEVYM+PPPGTS PPHKVCLLRRALYG
Sbjct: 914  MTSVRSLLAVAAAKQWPLLQMDVKNAFLNGTLSEEVYMKPPPGTSSPPHKVCLLRRALYG 973

Query: 241  LKQAPRTWFAIFSSTITQLGFSSSPHDTALFTRHTPQGIVLLLLYVDDIIITGNDSQDIS 300
            LKQAPR WFA FSSTITQLGF+SSPHDTALFTRHTPQGIVLLLLYVDD+IITGND   IS
Sbjct: 974  LKQAPRAWFATFSSTITQLGFTSSPHDTALFTRHTPQGIVLLLLYVDDMIITGNDPHAIS 1033

[Close]

BLAST of Cmc08g0228221 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 237.7 bits (605), Expect = 1.3e-62
Identity = 116/230 (50.43%), Postives = 156/230 (67.83%), Query Frame = 0


Query: 73  AMNDELQALDKIHTWDYVDLPPGKKLIGCKWIYKIKTHSDDTIEHYKARFVAKGYLQEYG 132
           AM+DE+ A++  HTW+   LPP KK IGCKW+YKIK +SD TIE YKAR VAKGY Q+ G
Sbjct: 101 AMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEG 160

Query: 133 IDYEETFAHVARMTSVRSLLAVSAAKQWPLFQMDVKNAFLNGTLFEEVYMQPPP------ 192
           ID+ ETF+ V ++TSV+ +LA+SA   + L Q+D+ NAFLNG L EE+YM+ PP      
Sbjct: 161 IDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQ 220

Query: 193 GTSPPPHKVCLLRRALYGLKQAPRTWFAIFSSTITQLGFSSSPHDTALFTRHTPQGIVLL 252
           G S PP+ VC L++++YGLKQA R WF  FS T+   GF  S  D   F + T    + +
Sbjct: 221 GDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCV 280

Query: 253 LLYVDDIIITGNDSQDISDLQHYLSQYFEMKDLGSLNYFLGLEVSRRSDG 297
           L+YVDDIII  N+   + +L+  L   F+++DLG L YFLGLE++R + G
Sbjct: 281 LVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAG 330

[Close]

BLAST of Cmc08g0228221 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 86.7 bits (213), Expect = 3.7e-17
Identity = 38/84 (45.24%), Postives = 57/84 (67.86%), Query Frame = 0


Query: 72  KAMNDELQALDKIHTWDYVDLPPGKKLIGCKWIYKIKTHSDDTIEHYKARFVAKGYLQEY 131
           +AM +EL AL +  TW  V  P  + ++GCKW++K K HSD T++  KAR VAKG+ QE 
Sbjct: 42  QAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEE 101

Query: 132 GIDYEETFAHVARMTSVRSLLAVS 156
           GI + ET++ V R  ++R++L V+
Sbjct: 102 GIYFVETYSPVVRTATIRTILNVA 125

[Close]

BLAST of Cmc08g0228221 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 55.1 bits (131), Expect = 1.2e-07
Identity = 26/54 (48.15%), Postives = 37/54 (68.52%), Query Frame = 0


Query: 246 LLLYVDDIIITGNDSQDISDLQHYLSQYFEMKDLGSLNYFLGLEVSRRSDGYFL 300
           LLLYVDDI++TG+ +  ++ L   LS  F MKDLG ++YFLG+++     G FL
Sbjct: 3   LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFL 56

The following BLAST results are available for this feature:

BLAST of Cmc08g0228221 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0041341.1	6.4e-173	97.47	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0064888.1	1.4e-140	78.51	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK21532.1	5.5e-140	77.91	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK19656.1	1.2e-139	77.91	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0037745.1	1.2e-139	77.91	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of Cmc08g0228221 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	1.3e-54	46.98	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	8.1e-54	46.12	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P10978	6.7e-48	41.56	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.0e-43	37.87	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P25600	7.2e-18	34.53	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Cmc08g0228221 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TI53	3.1e-173	97.47	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7VBA1	7.0e-141	78.51	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DD70	2.6e-140	77.91	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7VIT8	5.9e-140	77.91	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3D7V8	5.9e-140	77.91	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Cmc08g0228221 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.3e-62	50.43	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	3.7e-17	45.24	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]
ATMG00810.1	1.2e-07	48.15	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 85..299 e-value: 1.1E-64 score: 218.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..58
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 94..272
None	No IPR available	PANTHER	PTHR11439:SF322	CLASSICAL ARABINOGALACTAN PROTEIN 9-LIKE	coord: 94..272
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 86..293

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0228221.1	Cmc08g0228221.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0016020	membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding