Cmc08g0227961 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0227961
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag-pol polyprotein
Location	CMiso1.1chr08: 21547567 .. 21548094 (+)
RNA-Seq Expression	Cmc08g0227961
Synteny	Cmc08g0227961

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACAAATCAATGTTGATGATATCATATTCGAGGGATTCCCTAAGGAACTGGTTGAAAGTTTCATTGATATCATGAAATCAGAATTTGAGATGAGTATGGTGGGAGAATTATCATGTTTTTCGGGTCTCAAAATCAAACAAAGAAGTGAAGGTATATTTATAACTCAAGAGAAGTATGCCAAGAACATAGTACGAAAATTTGGTTTGGAAAAATCTCAACACAAAAAGACTCCAGGAAAAAAAAGGTCAAAGAATATGTTGCATGAGTATGGCATCATACAGGGTGGTATGACTCTATACTATGATAATATGAGTGTCATTGATATATCAAAAAATCCGGTTCAGCATAGTTTAACCAAGCATATTGATATAAGGTATCATTTTATTAGAGAGCTTATTGAAGATAAGATTATTATGTTGGAACATGTTCACTCAAATTTACAATTAGCAGATATTTTTACTAAACCTCTTGATGCGATCACTTTTGAGCACTTACGCACGAGATTAGGAGTTTGTAAGCTTTAA

mRNA sequence

ATGGCACAAATCAATGTTGATGATATCATATTCGAGGGATTCCCTAAGGAACTGGTTGAAAGTTTCATTGATATCATGAAATCAGAATTTGAGATGAGTATGGTGGGAGAATTATCATGTTTTTCGGGTCTCAAAATCAAACAAAGAAGTGAAGGTATATTTATAACTCAAGAGAAGTATGCCAAGAACATAGTACGAAAATTTGGTTTGGAAAAATCTCAACACAAAAAGACTCCAGGAAAAAAAAGGTCAAAGAATATGTTGCATGAGTATGGCATCATACAGGGTGGTATGACTCTATACTATGATAATATGAGTGTCATTGATATATCAAAAAATCCGGTTCAGCATAGTTTAACCAAGCATATTGATATAAGGTATCATTTTATTAGAGAGCTTATTGAAGATAAGATTATTATGTTGGAACATGTTCACTCAAATTTACAATTAGCAGATATTTTTACTAAACCTCTTGATGCGATCACTTTTGAGCACTTACGCACGAGATTAGGAGTTTGTAAGCTTTAA

Coding sequence (CDS)

ATGGCACAAATCAATGTTGATGATATCATATTCGAGGGATTCCCTAAGGAACTGGTTGAAAGTTTCATTGATATCATGAAATCAGAATTTGAGATGAGTATGGTGGGAGAATTATCATGTTTTTCGGGTCTCAAAATCAAACAAAGAAGTGAAGGTATATTTATAACTCAAGAGAAGTATGCCAAGAACATAGTACGAAAATTTGGTTTGGAAAAATCTCAACACAAAAAGACTCCAGGAAAAAAAAGGTCAAAGAATATGTTGCATGAGTATGGCATCATACAGGGTGGTATGACTCTATACTATGATAATATGAGTGTCATTGATATATCAAAAAATCCGGTTCAGCATAGTTTAACCAAGCATATTGATATAAGGTATCATTTTATTAGAGAGCTTATTGAAGATAAGATTATTATGTTGGAACATGTTCACTCAAATTTACAATTAGCAGATATTTTTACTAAACCTCTTGATGCGATCACTTTTGAGCACTTACGCACGAGATTAGGAGTTTGTAAGCTTTAA

Protein sequence

MAQINVDDIIFEGFPKELVESFIDIMKSEFEMSMVGELSCFSGLKIKQRSEGIFITQEKYAKNIVRKFGLEKSQHKKTPGKKRSKNMLHEYGIIQGGMTLYYDNMSVIDISKNPVQHSLTKHIDIRYHFIRELIEDKIIMLEHVHSNLQLADIFTKPLDAITFEHLRTRLGVCKL

Homology

[Close]

BLAST of Cmc08g0227961 vs. NCBI nr
Match: KAA0041780.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK27068.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 207.6 bits (527), Expect = 8.7e-50
Identity = 113/234 (48.29%), Postives = 146/234 (62.39%), Query Frame = 0


Query: 1   MAQINVDDIIFEGFPKELVESFIDIMKSEFEMSMVGELSCFSGLKIKQRSEGIFITQEKY 60
           +AQI VDDIIF GFP++L+ +FI+IM+SEFEMSMVGELSCF GL+IKQ+++GIF++QEKY
Sbjct: 83  VAQIYVDDIIFRGFPQDLINNFINIMQSEFEMSMVGELSCFLGLQIKQKNDGIFMSQEKY 142

Query: 61  AKNIVRKFGLEKSQHKKTP----------------------------------------- 120
           A+N+V+KFGLE++++K+TP                                         
Sbjct: 143 ARNMVKKFGLEQARNKRTPATTHVKLTKGTEGAEVDHKLYRSIVGSLLYLTASRPDIAYV 202

Query: 121 -----------------------GKKRSKNMLHEYGIIQGGMTLYYDNMSVIDISKNPVQ 171
                                  G    +    +YG  Q  MTLY DNMSVIDISKNP+Q
Sbjct: 203 CFGMMYSYDTNPTLVGYCDADWAGSADDRKTEAKYGFDQDTMTLYCDNMSVIDISKNPIQ 262

[Close]

BLAST of Cmc08g0227961 vs. NCBI nr
Match: TYK18151.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 207.2 bits (526), Expect = 1.1e-49
Identity = 121/259 (46.72%), Postives = 149/259 (57.53%), Query Frame = 0


Query: 1   MAQINVDDIIFEGFPKELVESFIDIMKSEFEMSMVGELSCFSGLKIKQRSEGIFITQEKY 60
           +AQI VDDIIF GFP++LV +FI+IM+ EFEMSMVGELSCF GL+IKQ++ GIFI QEKY
Sbjct: 83  VAQIYVDDIIFGGFPQDLVNNFINIMQPEFEMSMVGELSCFLGLQIKQKNGGIFILQEKY 142

Query: 61  AKNIVRKFGLEKSQHKKTPGKKRS------------------------------------ 120
           A+N+V+KFGLE++++K+TP  K +                                    
Sbjct: 143 ARNMVKKFGLEQARNKRTPAAKLTKDTEGADVDHKLYRSIVGSLLYLTASRPDIAYAVGI 202

Query: 121 --------------------------------------------------KNMLHEYGII 174
                                                             KNML EYG  
Sbjct: 203 CACYQADPRITHLEALDIVMLTGQVQLMIVKVAEAEYIAAGSGCTQLIWMKNMLLEYGFN 262

[Close]

BLAST of Cmc08g0227961 vs. NCBI nr
Match: KAA0066164.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK15206.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 189.1 bits (479), Expect = 3.2e-44
Identity = 118/260 (45.38%), Postives = 142/260 (54.62%), Query Frame = 0


Query: 1    MAQINVDDIIFEGFPKELVESFIDIMKSEFEMSMVGELSCFSGLKIKQRSEGIFITQEKY 60
            +AQI VDDIIF GFP +LV +FI     EFEMSMVGELSCF GL+IKQ+++ IFI+QEKY
Sbjct: 752  VAQIYVDDIIFRGFPHDLVNNFI-----EFEMSMVGELSCFLGLQIKQKNDDIFISQEKY 811

Query: 61   AKNIVRKFGLEKSQHKKTPGK---------------------------------KR---- 120
            A+N+V+KFGLE++++K+TP                                   KR    
Sbjct: 812  ARNMVKKFGLEQARNKRTPAATHVKLTKDTESSEVDHKLYRSIADPRITHLEAVKRILKY 871

Query: 121  ----------------------------------------------------SKNMLHEY 172
                                                                 KNML EY
Sbjct: 872  VHGTSDFGMMYSYDTTPTLVGYCDAEWAGSTDDCKTEAKYVAAGSGCTQLIWMKNMLLEY 931

[Close]

BLAST of Cmc08g0227961 vs. NCBI nr
Match: KAA0066740.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK27888.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 183.0 bits (463), Expect = 2.3e-42
Identity = 116/285 (40.70%), Postives = 147/285 (51.58%), Query Frame = 0


Query: 1   MAQINVDDIIFEGFPKELVESFIDIMKSEFEMSMVGELSCFSGLKIKQRSEGIFITQEKY 60
           +AQI VDDIIF GFP++LV +FI+IM+SEFEMSMVGEL CF GL+I+Q+++ IFI+Q+KY
Sbjct: 83  VAQIYVDDIIFGGFPQDLVNNFINIMQSEFEMSMVGELLCFLGLQIRQKNDDIFISQKKY 142

Query: 61  AKNIVRKFGLEKSQHKKTPGK--------------------------------------- 120
           A+NIV+KFGLE++++K+TP                                         
Sbjct: 143 ARNIVKKFGLEQARNKRTPATTHVKLTKDIEGAEVDHKLYRSIVGSLLYLTASRPDIAYA 202

Query: 121 -------------------KR--------------------------------------- 172
                              KR                                       
Sbjct: 203 MGIYARYQVVPRITHLEAIKRILKYVHRTCDFGMMYSYDTTPTLVGYCDADWAGSTDDRK 262

[Close]

BLAST of Cmc08g0227961 vs. NCBI nr
Match: KAA0032034.1 (F5J5.1 [Cucumis melo var. makuwa])

HSP 1 Score: 182.6 bits (462), Expect = 3.0e-42
Identity = 113/245 (46.12%), Postives = 140/245 (57.14%), Query Frame = 0


Query: 1   MAQINVDDIIFEGFPKELVESFIDIMKSEFEMSMVGELSCFSGLKIKQRSEGIFITQEK- 60
           +AQI VDDIIF GFP++LV +FI+IM+SEFEMSMVGELSCF GL+ KQ+++ IF++QEK 
Sbjct: 631 VAQIYVDDIIFGGFPQDLVNNFINIMQSEFEMSMVGELSCFLGLQNKQKNDDIFLSQEKS 690

Query: 61  ----------------YAKNIVRK-------------------------FGL-------- 120
                           Y   I  +                         FG+        
Sbjct: 691 IVGSLLYLTASRPDIAYVVGICARYQADPRISHLEAIKRILKYVHGTNDFGMIYSYNTTP 750

Query: 121 -----------EKSQHKKTPGKKRS-----------KNMLHEYGIIQGGMTLYYDNMSVI 174
                        + + KT  +  +           KN+LHEYG  Q  +TLY DNMS I
Sbjct: 751 TLVGYCDADWASSADNCKTKAEYMAIGSGCTQLIWMKNILHEYGFDQDTITLYCDNMSAI 810

[Close]

BLAST of Cmc08g0227961 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 80.9 bits (198), Expect = 1.6e-14
Identity = 37/79 (46.84%), Postives = 52/79 (65.82%), Query Frame = 0


Query: 94   IQGGMTLYYDNMSVIDISKNPVQHSLTKHIDIRYHFIRELIEDKIIMLEHVHSNLQLADI 153
            ++  + +Y DN   I I+ NP  H   KHIDI+YHF RE +++ +I LE++ +  QLADI
Sbjct: 1322 LENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADI 1381

Query: 154  FTKPLDAITFEHLRTRLGV 173
            FTKPL A  F  LR +LG+
Sbjct: 1382 FTKPLPAARFVELRDKLGL 1400

[Close]

BLAST of Cmc08g0227961 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 7.5e-12
Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = 0


Query: 85   KNMLHEYGIIQGGMTLYYDNMSVIDISKNPVQHSLTKHIDIRYHFIRELIEDKIIMLEHV 144
            K  L E G+ Q    +Y D+ S ID+SKN + H+ TKHID+RYH+IRE+++D+ + +  +
Sbjct: 1238 KRFLQELGLHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKI 1297

Query: 145  HSNLQLADIFTKPLDAITFEHLRTRLGV 173
             +N   AD+ TK +    FE  +  +G+
Sbjct: 1298 STNENPADMLTKVVPRNKFELCKELVGM 1325

[Close]

BLAST of Cmc08g0227961 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.8e-10
Identity = 34/91 (37.36%), Postives = 53/91 (58.24%), Query Frame = 0


Query: 86   NMLHEYGI-IQGGMTLYYDNMSVIDISKNPVQHSLTKHIDIRYHFIRELIEDKIIMLEHV 145
            ++L E GI +     +Y DN+    +  NPV HS  KHI + YHFIR  ++   + + HV
Sbjct: 1356 SLLTELGIQLSHPPVIYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQVQSGALRVVHV 1415

Query: 146  HSNLQLADIFTKPLDAITFEHLRTRLGVCKL 176
             ++ QLAD  TKPL  + F++   ++GV K+
Sbjct: 1416 STHDQLADTLTKPLSRVAFQNFSRKIGVIKV 1446

[Close]

BLAST of Cmc08g0227961 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.3e-10
Identity = 34/91 (37.36%), Postives = 53/91 (58.24%), Query Frame = 0


Query: 86   NMLHEYGI-IQGGMTLYYDNMSVIDISKNPVQHSLTKHIDIRYHFIRELIEDKIIMLEHV 145
            ++L E GI +     +Y DN+    +  NPV HS  KHI I YHFIR  ++   + + HV
Sbjct: 1373 SLLTELGIRLTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHV 1432

Query: 146  HSNLQLADIFTKPLDAITFEHLRTRLGVCKL 176
             ++ QLAD  TKPL    F++  +++GV ++
Sbjct: 1433 STHDQLADTLTKPLSRTAFQNFASKIGVTRV 1463

[Close]

BLAST of Cmc08g0227961 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 3.4e-04
Identity = 25/74 (33.78%), Postives = 39/74 (52.70%), Query Frame = 0


Query: 6  VDDIIFEGFPKELVESFIDIMKSEFEMSMVGELSCFSGLKIKQRSEGIFITQEKYAKNIV 65
          VDDI+  G    L+   I  + S F M  +G +  F G++IK    G+F++Q KYA+ I+
Sbjct: 7  VDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQIL 66

Query: 66 RKFGLEKSQHKKTP 80
             G+   +   TP
Sbjct: 67 NNAGMLDCKPMSTP 80

[Close]

BLAST of Cmc08g0227961 vs. ExPASy TrEMBL
Match: A0A5D3DU96 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold95G00670 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 4.2e-50
Identity = 113/234 (48.29%), Postives = 146/234 (62.39%), Query Frame = 0


Query: 1   MAQINVDDIIFEGFPKELVESFIDIMKSEFEMSMVGELSCFSGLKIKQRSEGIFITQEKY 60
           +AQI VDDIIF GFP++L+ +FI+IM+SEFEMSMVGELSCF GL+IKQ+++GIF++QEKY
Sbjct: 83  VAQIYVDDIIFRGFPQDLINNFINIMQSEFEMSMVGELSCFLGLQIKQKNDGIFMSQEKY 142

Query: 61  AKNIVRKFGLEKSQHKKTP----------------------------------------- 120
           A+N+V+KFGLE++++K+TP                                         
Sbjct: 143 ARNMVKKFGLEQARNKRTPATTHVKLTKGTEGAEVDHKLYRSIVGSLLYLTASRPDIAYV 202

Query: 121 -----------------------GKKRSKNMLHEYGIIQGGMTLYYDNMSVIDISKNPVQ 171
                                  G    +    +YG  Q  MTLY DNMSVIDISKNP+Q
Sbjct: 203 CFGMMYSYDTNPTLVGYCDADWAGSADDRKTEAKYGFDQDTMTLYCDNMSVIDISKNPIQ 262

[Close]

BLAST of Cmc08g0227961 vs. ExPASy TrEMBL
Match: A0A5D3D1M6 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00830 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 5.5e-50
Identity = 121/259 (46.72%), Postives = 149/259 (57.53%), Query Frame = 0


Query: 1   MAQINVDDIIFEGFPKELVESFIDIMKSEFEMSMVGELSCFSGLKIKQRSEGIFITQEKY 60
           +AQI VDDIIF GFP++LV +FI+IM+ EFEMSMVGELSCF GL+IKQ++ GIFI QEKY
Sbjct: 83  VAQIYVDDIIFGGFPQDLVNNFINIMQPEFEMSMVGELSCFLGLQIKQKNGGIFILQEKY 142

Query: 61  AKNIVRKFGLEKSQHKKTPGKKRS------------------------------------ 120
           A+N+V+KFGLE++++K+TP  K +                                    
Sbjct: 143 ARNMVKKFGLEQARNKRTPAAKLTKDTEGADVDHKLYRSIVGSLLYLTASRPDIAYAVGI 202

Query: 121 --------------------------------------------------KNMLHEYGII 174
                                                             KNML EYG  
Sbjct: 203 CACYQADPRITHLEALDIVMLTGQVQLMIVKVAEAEYIAAGSGCTQLIWMKNMLLEYGFN 262

[Close]

BLAST of Cmc08g0227961 vs. ExPASy TrEMBL
Match: A0A5D3CXU0 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold790G00820 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 1.5e-44
Identity = 118/260 (45.38%), Postives = 142/260 (54.62%), Query Frame = 0


Query: 1    MAQINVDDIIFEGFPKELVESFIDIMKSEFEMSMVGELSCFSGLKIKQRSEGIFITQEKY 60
            +AQI VDDIIF GFP +LV +FI     EFEMSMVGELSCF GL+IKQ+++ IFI+QEKY
Sbjct: 752  VAQIYVDDIIFRGFPHDLVNNFI-----EFEMSMVGELSCFLGLQIKQKNDDIFISQEKY 811

Query: 61   AKNIVRKFGLEKSQHKKTPGK---------------------------------KR---- 120
            A+N+V+KFGLE++++K+TP                                   KR    
Sbjct: 812  ARNMVKKFGLEQARNKRTPAATHVKLTKDTESSEVDHKLYRSIADPRITHLEAVKRILKY 871

Query: 121  ----------------------------------------------------SKNMLHEY 172
                                                                 KNML EY
Sbjct: 872  VHGTSDFGMMYSYDTTPTLVGYCDAEWAGSTDDCKTEAKYVAAGSGCTQLIWMKNMLLEY 931

[Close]

BLAST of Cmc08g0227961 vs. ExPASy TrEMBL
Match: A0A5D3DWS6 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00720 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 1.1e-42
Identity = 116/285 (40.70%), Postives = 147/285 (51.58%), Query Frame = 0


Query: 1   MAQINVDDIIFEGFPKELVESFIDIMKSEFEMSMVGELSCFSGLKIKQRSEGIFITQEKY 60
           +AQI VDDIIF GFP++LV +FI+IM+SEFEMSMVGEL CF GL+I+Q+++ IFI+Q+KY
Sbjct: 83  VAQIYVDDIIFGGFPQDLVNNFINIMQSEFEMSMVGELLCFLGLQIRQKNDDIFISQKKY 142

Query: 61  AKNIVRKFGLEKSQHKKTPGK--------------------------------------- 120
           A+NIV+KFGLE++++K+TP                                         
Sbjct: 143 ARNIVKKFGLEQARNKRTPATTHVKLTKDIEGAEVDHKLYRSIVGSLLYLTASRPDIAYA 202

Query: 121 -------------------KR--------------------------------------- 172
                              KR                                       
Sbjct: 203 MGIYARYQVVPRITHLEAIKRILKYVHRTCDFGMMYSYDTTPTLVGYCDADWAGSTDDRK 262

[Close]

BLAST of Cmc08g0227961 vs. ExPASy TrEMBL
Match: A0A5A7SLH7 (F5J5.1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold134G001330 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.4e-42
Identity = 113/245 (46.12%), Postives = 140/245 (57.14%), Query Frame = 0


Query: 1   MAQINVDDIIFEGFPKELVESFIDIMKSEFEMSMVGELSCFSGLKIKQRSEGIFITQEK- 60
           +AQI VDDIIF GFP++LV +FI+IM+SEFEMSMVGELSCF GL+ KQ+++ IF++QEK 
Sbjct: 631 VAQIYVDDIIFGGFPQDLVNNFINIMQSEFEMSMVGELSCFLGLQNKQKNDDIFLSQEKS 690

Query: 61  ----------------YAKNIVRK-------------------------FGL-------- 120
                           Y   I  +                         FG+        
Sbjct: 691 IVGSLLYLTASRPDIAYVVGICARYQADPRISHLEAIKRILKYVHGTNDFGMIYSYNTTP 750

Query: 121 -----------EKSQHKKTPGKKRS-----------KNMLHEYGIIQGGMTLYYDNMSVI 174
                        + + KT  +  +           KN+LHEYG  Q  +TLY DNMS I
Sbjct: 751 TLVGYCDADWASSADNCKTKAEYMAIGSGCTQLIWMKNILHEYGFDQDTITLYCDNMSAI 810

[Close]

BLAST of Cmc08g0227961 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 46.6 bits (109), Expect = 2.4e-05
Identity = 25/74 (33.78%), Postives = 39/74 (52.70%), Query Frame = 0


Query: 6  VDDIIFEGFPKELVESFIDIMKSEFEMSMVGELSCFSGLKIKQRSEGIFITQEKYAKNIV 65
          VDDI+  G    L+   I  + S F M  +G +  F G++IK    G+F++Q KYA+ I+
Sbjct: 7  VDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQIL 66

Query: 66 RKFGLEKSQHKKTP 80
             G+   +   TP
Sbjct: 67 NNAGMLDCKPMSTP 80

The following BLAST results are available for this feature:

BLAST of Cmc08g0227961 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0041780.1	8.7e-50	48.29	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK27068.1 gag-pol polyprotein [...	[more]
TYK18151.1	1.1e-49	46.72	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0066164.1	3.2e-44	45.38	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK15206.1 gag-pol polyprotein [...	[more]
KAA0066740.1	2.3e-42	40.70	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK27888.1 gag-pol polyprotein [...	[more]
KAA0032034.1	3.0e-42	46.12	F5J5.1 [Cucumis melo var. makuwa]	[more]

BLAST of Cmc08g0227961 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04146	1.6e-14	46.84	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P10978	7.5e-12	38.64	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	1.8e-10	37.36	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	5.3e-10	37.36	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P92519	3.4e-04	33.78	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc08g0227961 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DU96	4.2e-50	48.29	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold95G0...	[more]
A0A5D3D1M6	5.5e-50	46.72	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G...	[more]
A0A5D3CXU0	1.5e-44	45.38	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold790G...	[more]
A0A5D3DWS6	1.1e-42	40.70	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G...	[more]
A0A5A7SLH7	1.4e-42	46.12	F5J5.1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold134G001330 PE=4 S...	[more]

BLAST of Cmc08g0227961 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00810.1	2.4e-05	33.78	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 4..79 e-value: 7.7E-12 score: 45.3
None	No IPR available	PANTHER	PTHR11439:SF343	SUBFAMILY NOT NAMED	coord: 97..173
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 97..173
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 85..161 e-value: 5.91154E-37 score: 122.577

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0227961.1	Cmc08g0227961.1	mRNA