Cmc08g0227881 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0227881
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase domain-containing protein
Location	CMiso1.1chr08: 21307443 .. 21307892 (+)
RNA-Seq Expression	Cmc08g0227881
Synteny	Cmc08g0227881

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTTTTGGCCTAACGAACGCACCAGCCACGTTCTGCACACTCATGAATAAACTCTTCCAGTCGTTCTTAGACCGATTCGTCGTAGTGTATCTGGATGACATTGTTGTCTACAGTCAGACATTAGAAGAGCATGTCCAACACTTGAGACAAGTCTTCCAAGTACTCCGCGACAATGAATTATATATAAAGCTGGAAAAATGTTCCTTTGCCAAGCAAGAAGTCGAGTTCCTTGGACATTGGATAAAAGAAGGCAAATTAATGATGGACAATGCCAAGGTACGTGCGATACTAGAGTGGAAGGCCCCAACTAAAGTACCCGAACTACGGTCTTTCTTGGGGTTCGTGAACTATTACCGGAGATTCATCAAGGGGTATTCTGGCATCGCTGCCCCTCTCACCAACCTATTGAAGAAAAATCAAACGTGGGATTGGACGGAGGAGTGCTAG

mRNA sequence

ATGCCTTTTGGCCTAACGAACGCACCAGCCACGTTCTGCACACTCATGAATAAACTCTTCCAGTCGTTCTTAGACCGATTCGTCGTAGTGTATCTGGATGACATTGTTGTCTACAGTCAGACATTAGAAGAGCATGTCCAACACTTGAGACAAGTCTTCCAAGTACTCCGCGACAATGAATTATATATAAAGCTGGAAAAATGTTCCTTTGCCAAGCAAGAAGTCGAGTTCCTTGGACATTGGATAAAAGAAGGCAAATTAATGATGGACAATGCCAAGGTACGTGCGATACTAGAGTGGAAGGCCCCAACTAAAGTACCCGAACTACGGTCTTTCTTGGGGTTCGTGAACTATTACCGGAGATTCATCAAGGGGTATTCTGGCATCGCTGCCCCTCTCACCAACCTATTGAAGAAAAATCAAACGTGGGATTGGACGGAGGAGTGCTAG

Coding sequence (CDS)

ATGCCTTTTGGCCTAACGAACGCACCAGCCACGTTCTGCACACTCATGAATAAACTCTTCCAGTCGTTCTTAGACCGATTCGTCGTAGTGTATCTGGATGACATTGTTGTCTACAGTCAGACATTAGAAGAGCATGTCCAACACTTGAGACAAGTCTTCCAAGTACTCCGCGACAATGAATTATATATAAAGCTGGAAAAATGTTCCTTTGCCAAGCAAGAAGTCGAGTTCCTTGGACATTGGATAAAAGAAGGCAAATTAATGATGGACAATGCCAAGGTACGTGCGATACTAGAGTGGAAGGCCCCAACTAAAGTACCCGAACTACGGTCTTTCTTGGGGTTCGTGAACTATTACCGGAGATTCATCAAGGGGTATTCTGGCATCGCTGCCCCTCTCACCAACCTATTGAAGAAAAATCAAACGTGGGATTGGACGGAGGAGTGCTAG

Protein sequence

MPFGLTNAPATFCTLMNKLFQSFLDRFVVVYLDDIVVYSQTLEEHVQHLRQVFQVLRDNELYIKLEKCSFAKQEVEFLGHWIKEGKLMMDNAKVRAILEWKAPTKVPELRSFLGFVNYYRRFIKGYSGIAAPLTNLLKKNQTWDWTEEC

Homology

[Close]

BLAST of Cmc08g0227881 vs. NCBI nr
Match: TYK07503.1 (uncharacterized protein E5676_scaffold1702G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 306.6 bits (784), Expect = 1.2e-79
Identity = 147/149 (98.66%), Postives = 147/149 (98.66%), Query Frame = 0


Query: 1   MPFGLTNAPATFCTLMNKLFQSFLDRFVVVYLDDIVVYSQTLEEHVQHLRQVFQVLRDNE 60
           MPFGLTNAP TFCTLMNKLFQ FLDRFVVVYLDDIVVYSQTLEEHVQHLRQVFQVLRDNE
Sbjct: 158 MPFGLTNAPVTFCTLMNKLFQPFLDRFVVVYLDDIVVYSQTLEEHVQHLRQVFQVLRDNE 217

Query: 61  LYIKLEKCSFAKQEVEFLGHWIKEGKLMMDNAKVRAILEWKAPTKVPELRSFLGFVNYYR 120
           LYIKLEKCSFAKQEVEFLGHWIKEGKLMMDNAKVRAILEWKAPTKVPELRSFLGFVNYYR
Sbjct: 218 LYIKLEKCSFAKQEVEFLGHWIKEGKLMMDNAKVRAILEWKAPTKVPELRSFLGFVNYYR 277

Query: 121 RFIKGYSGIAAPLTNLLKKNQTWDWTEEC 150
           RFIKGYSGIAAPLTNLLKKNQTWDWTEEC
Sbjct: 278 RFIKGYSGIAAPLTNLLKKNQTWDWTEEC 306

[Close]

BLAST of Cmc08g0227881 vs. NCBI nr
Match: KAA0033203.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 306.6 bits (784), Expect = 1.2e-79
Identity = 147/149 (98.66%), Postives = 147/149 (98.66%), Query Frame = 0


Query: 1   MPFGLTNAPATFCTLMNKLFQSFLDRFVVVYLDDIVVYSQTLEEHVQHLRQVFQVLRDNE 60
           MPFGLTNAP TFCTLMNKLFQ FLDRFVVVYLDDIVVYSQTLEEHVQHLRQVFQVLRDNE
Sbjct: 133 MPFGLTNAPVTFCTLMNKLFQPFLDRFVVVYLDDIVVYSQTLEEHVQHLRQVFQVLRDNE 192

Query: 61  LYIKLEKCSFAKQEVEFLGHWIKEGKLMMDNAKVRAILEWKAPTKVPELRSFLGFVNYYR 120
           LYIKLEKCSFAKQEVEFLGHWIKEGKLMMDNAKVRAILEWKAPTKVPELRSFLGFVNYYR
Sbjct: 193 LYIKLEKCSFAKQEVEFLGHWIKEGKLMMDNAKVRAILEWKAPTKVPELRSFLGFVNYYR 252

Query: 121 RFIKGYSGIAAPLTNLLKKNQTWDWTEEC 150
           RFIKGYSGIAAPLTNLLKKNQTWDWTEEC
Sbjct: 253 RFIKGYSGIAAPLTNLLKKNQTWDWTEEC 281

[Close]

BLAST of Cmc08g0227881 vs. NCBI nr
Match: TYK05160.1 (uncharacterized protein E5676_scaffold1415G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 306.2 bits (783), Expect = 1.5e-79
Identity = 146/149 (97.99%), Postives = 147/149 (98.66%), Query Frame = 0


Query: 1   MPFGLTNAPATFCTLMNKLFQSFLDRFVVVYLDDIVVYSQTLEEHVQHLRQVFQVLRDNE 60
           MPFGLTNAPATFCTLMNKLFQ FLDRFVVVYLDDI+VYSQTLEEHVQHLRQVFQVLRDNE
Sbjct: 244 MPFGLTNAPATFCTLMNKLFQPFLDRFVVVYLDDIIVYSQTLEEHVQHLRQVFQVLRDNE 303

Query: 61  LYIKLEKCSFAKQEVEFLGHWIKEGKLMMDNAKVRAILEWKAPTKVPELRSFLGFVNYYR 120
           LYIKLEKCSFAKQEVEFLGHWIKEGKLMMDNAKVR ILEWKAPTKVPELRSFLGFVNYYR
Sbjct: 304 LYIKLEKCSFAKQEVEFLGHWIKEGKLMMDNAKVRTILEWKAPTKVPELRSFLGFVNYYR 363

Query: 121 RFIKGYSGIAAPLTNLLKKNQTWDWTEEC 150
           RFIKGYSGIAAPLTNLLKKNQTWDWTEEC
Sbjct: 364 RFIKGYSGIAAPLTNLLKKNQTWDWTEEC 392

[Close]

BLAST of Cmc08g0227881 vs. NCBI nr
Match: XP_008446938.1 (PREDICTED: uncharacterized protein LOC103489499 [Cucumis melo])

HSP 1 Score: 305.4 bits (781), Expect = 2.6e-79
Identity = 146/149 (97.99%), Postives = 147/149 (98.66%), Query Frame = 0


Query: 1   MPFGLTNAPATFCTLMNKLFQSFLDRFVVVYLDDIVVYSQTLEEHVQHLRQVFQVLRDNE 60
           MPFGLTNAPATFCTLMNKLFQ FLDRFV+VYLDDIVVYSQTLEEHV HLRQVFQVLRDNE
Sbjct: 762 MPFGLTNAPATFCTLMNKLFQPFLDRFVIVYLDDIVVYSQTLEEHVPHLRQVFQVLRDNE 821

Query: 61  LYIKLEKCSFAKQEVEFLGHWIKEGKLMMDNAKVRAILEWKAPTKVPELRSFLGFVNYYR 120
           LYIKLEKCSFAKQEVEFLGHWIKEGKLMMDNAKVRAILEWKAPTKVPELRSFLGFVNYYR
Sbjct: 822 LYIKLEKCSFAKQEVEFLGHWIKEGKLMMDNAKVRAILEWKAPTKVPELRSFLGFVNYYR 881

Query: 121 RFIKGYSGIAAPLTNLLKKNQTWDWTEEC 150
           RFIKGYSGIAAPLTNLLKKNQTWDWTEEC
Sbjct: 882 RFIKGYSGIAAPLTNLLKKNQTWDWTEEC 910

[Close]

BLAST of Cmc08g0227881 vs. NCBI nr
Match: KAA0040659.1 (uncharacterized protein E6C27_scaffold370G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 305.1 bits (780), Expect = 3.4e-79
Identity = 146/149 (97.99%), Postives = 147/149 (98.66%), Query Frame = 0


Query: 1   MPFGLTNAPATFCTLMNKLFQSFLDRFVVVYLDDIVVYSQTLEEHVQHLRQVFQVLRDNE 60
           MPFGLTNAPATFCTLMNKLFQSFLDRFVVVYLDDIVVYSQTLEEHVQHLRQVFQVLRDNE
Sbjct: 762 MPFGLTNAPATFCTLMNKLFQSFLDRFVVVYLDDIVVYSQTLEEHVQHLRQVFQVLRDNE 821

Query: 61  LYIKLEKCSFAKQEVEFLGHWIKEGKLMMDNAKVRAILEWKAPTKVPELRSFLGFVNYYR 120
           LYIKLEKCSFAKQEVEFL HWIKEGKLMMDNAKVRAILEWKAPTK+PELRSFLGFVNYYR
Sbjct: 822 LYIKLEKCSFAKQEVEFLRHWIKEGKLMMDNAKVRAILEWKAPTKIPELRSFLGFVNYYR 881

Query: 121 RFIKGYSGIAAPLTNLLKKNQTWDWTEEC 150
           RFIKGYSGI APLTNLLKKNQTWDWTEEC
Sbjct: 882 RFIKGYSGIVAPLTNLLKKNQTWDWTEEC 910

[Close]

BLAST of Cmc08g0227881 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.1e-31
Identity = 67/146 (45.89%), Postives = 94/146 (64.38%), Query Frame = 0


Query: 1   MPFGLTNAPATFCTLMNKLFQSFLDRFVVVYLDDIVVYSQTLEEHVQHLRQVFQVLRDNE 60
           MPFGL NAPATF   MN + +  L++  +VYLDDI+V+S +L+EH+Q L  VF+ L    
Sbjct: 334 MPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKAN 393

Query: 61  LYIKLEKCSFAKQEVEFLGHWIKEGKLMMDNAKVRAILEWKAPTKVPELRSFLGFVNYYR 120
           L ++L+KC F KQE  FLGH +    +  +  K+ AI ++  PTK  E+++FLG   YYR
Sbjct: 394 LKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYR 453

Query: 121 RFIKGYSGIAAPLTNLLKKNQTWDWT 147
           +FI  ++ IA P+T  LKKN   D T
Sbjct: 454 KFIPNFADIAKPMTKCLKKNMKIDTT 479

[Close]

BLAST of Cmc08g0227881 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 4.7e-31
Identity = 65/144 (45.14%), Postives = 93/144 (64.58%), Query Frame = 0


Query: 1   MPFGLTNAPATFCTLMNKLFQSFLDRFVVVYLDDIVVYSQTLEEHVQHLRQVFQVLRDNE 60
           MPFGL NAPATF   MN + +  L++  +VYLDDI+++S +L EH+  ++ VF  L D  
Sbjct: 333 MPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADAN 392

Query: 61  LYIKLEKCSFAKQEVEFLGHWIKEGKLMMDNAKVRAILEWKAPTKVPELRSFLGFVNYYR 120
           L ++L+KC F K+E  FLGH +    +  +  KV+AI+ +  PTK  E+R+FLG   YYR
Sbjct: 393 LKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYR 452

Query: 121 RFIKGYSGIAAPLTNLLKKNQTWD 145
           +FI  Y+ IA P+T+ LKK    D
Sbjct: 453 KFIPNYADIAKPMTSCLKKRTKID 476

[Close]

BLAST of Cmc08g0227881 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 3.1e-27
Identity = 59/146 (40.41%), Postives = 87/146 (59.59%), Query Frame = 0


Query: 1   MPFGLTNAPATFCTLMNKLFQSFLDRFVVVYLDDIVVYSQTLEEHVQHLRQVFQVLRDNE 60
           MP+G++ APA F   +N +     +  VV Y+DDI+++S++  EHV+H++ V Q L++  
Sbjct: 534 MPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNAN 593

Query: 61  LYIKLEKCSFAKQEVEFLGHWIKEGKLMMDNAKVRAILEWKAPTKVPELRSFLGFVNYYR 120
           L I   KC F + +V+F+G+ I E         +  +L+WK P    ELR FLG VNY R
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLR 653

Query: 121 RFIKGYSGIAAPLTNLLKKNQTWDWT 147
           +FI   S +  PL NLLKK+  W WT
Sbjct: 654 KFIPKTSQLTHPLNNLLKKDVRWKWT 679

[Close]

BLAST of Cmc08g0227881 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 3.1e-27
Identity = 59/146 (40.41%), Postives = 87/146 (59.59%), Query Frame = 0


Query: 1   MPFGLTNAPATFCTLMNKLFQSFLDRFVVVYLDDIVVYSQTLEEHVQHLRQVFQVLRDNE 60
           MP+G++ APA F   +N +     +  VV Y+DDI+++S++  EHV+H++ V Q L++  
Sbjct: 534 MPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNAN 593

Query: 61  LYIKLEKCSFAKQEVEFLGHWIKEGKLMMDNAKVRAILEWKAPTKVPELRSFLGFVNYYR 120
           L I   KC F + +V+F+G+ I E         +  +L+WK P    ELR FLG VNY R
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLR 653

Query: 121 RFIKGYSGIAAPLTNLLKKNQTWDWT 147
           +FI   S +  PL NLLKK+  W WT
Sbjct: 654 KFIPKTSQLTHPLNNLLKKDVRWKWT 679

[Close]

BLAST of Cmc08g0227881 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 3.1e-27
Identity = 59/146 (40.41%), Postives = 87/146 (59.59%), Query Frame = 0


Query: 1   MPFGLTNAPATFCTLMNKLFQSFLDRFVVVYLDDIVVYSQTLEEHVQHLRQVFQVLRDNE 60
           MP+G++ APA F   +N +     +  VV Y+DDI+++S++  EHV+H++ V Q L++  
Sbjct: 534 MPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNAN 593

Query: 61  LYIKLEKCSFAKQEVEFLGHWIKEGKLMMDNAKVRAILEWKAPTKVPELRSFLGFVNYYR 120
           L I   KC F + +V+F+G+ I E         +  +L+WK P    ELR FLG VNY R
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLR 653

Query: 121 RFIKGYSGIAAPLTNLLKKNQTWDWT 147
           +FI   S +  PL NLLKK+  W WT
Sbjct: 654 KFIPKTSQLTHPLNNLLKKDVRWKWT 679

[Close]

BLAST of Cmc08g0227881 vs. ExPASy TrEMBL
Match: A0A5D3C6G5 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1702G00200 PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 5.7e-80
Identity = 147/149 (98.66%), Postives = 147/149 (98.66%), Query Frame = 0


Query: 1   MPFGLTNAPATFCTLMNKLFQSFLDRFVVVYLDDIVVYSQTLEEHVQHLRQVFQVLRDNE 60
           MPFGLTNAP TFCTLMNKLFQ FLDRFVVVYLDDIVVYSQTLEEHVQHLRQVFQVLRDNE
Sbjct: 158 MPFGLTNAPVTFCTLMNKLFQPFLDRFVVVYLDDIVVYSQTLEEHVQHLRQVFQVLRDNE 217

Query: 61  LYIKLEKCSFAKQEVEFLGHWIKEGKLMMDNAKVRAILEWKAPTKVPELRSFLGFVNYYR 120
           LYIKLEKCSFAKQEVEFLGHWIKEGKLMMDNAKVRAILEWKAPTKVPELRSFLGFVNYYR
Sbjct: 218 LYIKLEKCSFAKQEVEFLGHWIKEGKLMMDNAKVRAILEWKAPTKVPELRSFLGFVNYYR 277

Query: 121 RFIKGYSGIAAPLTNLLKKNQTWDWTEEC 150
           RFIKGYSGIAAPLTNLLKKNQTWDWTEEC
Sbjct: 278 RFIKGYSGIAAPLTNLLKKNQTWDWTEEC 306

[Close]

BLAST of Cmc08g0227881 vs. ExPASy TrEMBL
Match: A0A5A7SS05 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1276G00540 PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 5.7e-80
Identity = 147/149 (98.66%), Postives = 147/149 (98.66%), Query Frame = 0


Query: 1   MPFGLTNAPATFCTLMNKLFQSFLDRFVVVYLDDIVVYSQTLEEHVQHLRQVFQVLRDNE 60
           MPFGLTNAP TFCTLMNKLFQ FLDRFVVVYLDDIVVYSQTLEEHVQHLRQVFQVLRDNE
Sbjct: 133 MPFGLTNAPVTFCTLMNKLFQPFLDRFVVVYLDDIVVYSQTLEEHVQHLRQVFQVLRDNE 192

Query: 61  LYIKLEKCSFAKQEVEFLGHWIKEGKLMMDNAKVRAILEWKAPTKVPELRSFLGFVNYYR 120
           LYIKLEKCSFAKQEVEFLGHWIKEGKLMMDNAKVRAILEWKAPTKVPELRSFLGFVNYYR
Sbjct: 193 LYIKLEKCSFAKQEVEFLGHWIKEGKLMMDNAKVRAILEWKAPTKVPELRSFLGFVNYYR 252

Query: 121 RFIKGYSGIAAPLTNLLKKNQTWDWTEEC 150
           RFIKGYSGIAAPLTNLLKKNQTWDWTEEC
Sbjct: 253 RFIKGYSGIAAPLTNLLKKNQTWDWTEEC 281

[Close]

BLAST of Cmc08g0227881 vs. ExPASy TrEMBL
Match: A0A5D3C1A7 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1415G00180 PE=4 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 7.4e-80
Identity = 146/149 (97.99%), Postives = 147/149 (98.66%), Query Frame = 0


Query: 1   MPFGLTNAPATFCTLMNKLFQSFLDRFVVVYLDDIVVYSQTLEEHVQHLRQVFQVLRDNE 60
           MPFGLTNAPATFCTLMNKLFQ FLDRFVVVYLDDI+VYSQTLEEHVQHLRQVFQVLRDNE
Sbjct: 244 MPFGLTNAPATFCTLMNKLFQPFLDRFVVVYLDDIIVYSQTLEEHVQHLRQVFQVLRDNE 303

Query: 61  LYIKLEKCSFAKQEVEFLGHWIKEGKLMMDNAKVRAILEWKAPTKVPELRSFLGFVNYYR 120
           LYIKLEKCSFAKQEVEFLGHWIKEGKLMMDNAKVR ILEWKAPTKVPELRSFLGFVNYYR
Sbjct: 304 LYIKLEKCSFAKQEVEFLGHWIKEGKLMMDNAKVRTILEWKAPTKVPELRSFLGFVNYYR 363

Query: 121 RFIKGYSGIAAPLTNLLKKNQTWDWTEEC 150
           RFIKGYSGIAAPLTNLLKKNQTWDWTEEC
Sbjct: 364 RFIKGYSGIAAPLTNLLKKNQTWDWTEEC 392

[Close]

BLAST of Cmc08g0227881 vs. ExPASy TrEMBL
Match: A0A1S3BG92 (uncharacterized protein LOC103489499 OS=Cucumis melo OX=3656 GN=LOC103489499 PE=4 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 1.3e-79
Identity = 146/149 (97.99%), Postives = 147/149 (98.66%), Query Frame = 0


Query: 1   MPFGLTNAPATFCTLMNKLFQSFLDRFVVVYLDDIVVYSQTLEEHVQHLRQVFQVLRDNE 60
           MPFGLTNAPATFCTLMNKLFQ FLDRFV+VYLDDIVVYSQTLEEHV HLRQVFQVLRDNE
Sbjct: 762 MPFGLTNAPATFCTLMNKLFQPFLDRFVIVYLDDIVVYSQTLEEHVPHLRQVFQVLRDNE 821

Query: 61  LYIKLEKCSFAKQEVEFLGHWIKEGKLMMDNAKVRAILEWKAPTKVPELRSFLGFVNYYR 120
           LYIKLEKCSFAKQEVEFLGHWIKEGKLMMDNAKVRAILEWKAPTKVPELRSFLGFVNYYR
Sbjct: 822 LYIKLEKCSFAKQEVEFLGHWIKEGKLMMDNAKVRAILEWKAPTKVPELRSFLGFVNYYR 881

Query: 121 RFIKGYSGIAAPLTNLLKKNQTWDWTEEC 150
           RFIKGYSGIAAPLTNLLKKNQTWDWTEEC
Sbjct: 882 RFIKGYSGIAAPLTNLLKKNQTWDWTEEC 910

[Close]

BLAST of Cmc08g0227881 vs. ExPASy TrEMBL
Match: A0A5A7THC0 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold370G00130 PE=4 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 1.6e-79
Identity = 146/149 (97.99%), Postives = 147/149 (98.66%), Query Frame = 0


Query: 1   MPFGLTNAPATFCTLMNKLFQSFLDRFVVVYLDDIVVYSQTLEEHVQHLRQVFQVLRDNE 60
           MPFGLTNAPATFCTLMNKLFQSFLDRFVVVYLDDIVVYSQTLEEHVQHLRQVFQVLRDNE
Sbjct: 762 MPFGLTNAPATFCTLMNKLFQSFLDRFVVVYLDDIVVYSQTLEEHVQHLRQVFQVLRDNE 821

Query: 61  LYIKLEKCSFAKQEVEFLGHWIKEGKLMMDNAKVRAILEWKAPTKVPELRSFLGFVNYYR 120
           LYIKLEKCSFAKQEVEFL HWIKEGKLMMDNAKVRAILEWKAPTK+PELRSFLGFVNYYR
Sbjct: 822 LYIKLEKCSFAKQEVEFLRHWIKEGKLMMDNAKVRAILEWKAPTKIPELRSFLGFVNYYR 881

Query: 121 RFIKGYSGIAAPLTNLLKKNQTWDWTEEC 150
           RFIKGYSGI APLTNLLKKNQTWDWTEEC
Sbjct: 882 RFIKGYSGIVAPLTNLLKKNQTWDWTEEC 910

[Close]

BLAST of Cmc08g0227881 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 87.0 bits (214), Expect = 1.4e-17
Identity = 43/104 (41.35%), Postives = 59/104 (56.73%), Query Frame = 0


Query: 46  VQHLRQVFQVLRDNELYIKLEKCSFAKQEVEFLG--HWIKEGKLMMDNAKVRAILEWKAP 105
           + HL  V Q+   ++ Y   +KC+F + ++ +LG  H I    +  D AK+ A++ W  P
Sbjct: 1   MNHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEP 60

Query: 106 TKVPELRSFLGFVNYYRRFIKGYSGIAAPLTNLLKKNQTWDWTE 148
               ELR FLG   YYRRF+K Y  I  PLT LLKKN +  WTE
Sbjct: 61  KNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKN-SLKWTE 103

The following BLAST results are available for this feature:

BLAST of Cmc08g0227881 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK07503.1	1.2e-79	98.66	uncharacterized protein E5676_scaffold1702G00200 [Cucumis melo var. makuwa]	[more]
KAA0033203.1	1.2e-79	98.66	polyprotein [Cucumis melo var. makuwa]	[more]
TYK05160.1	1.5e-79	97.99	uncharacterized protein E5676_scaffold1415G00180 [Cucumis melo var. makuwa]	[more]
XP_008446938.1	2.6e-79	97.99	PREDICTED: uncharacterized protein LOC103489499 [Cucumis melo]	[more]
KAA0040659.1	3.4e-79	97.99	uncharacterized protein E6C27_scaffold370G00130 [Cucumis melo var. makuwa]	[more]

BLAST of Cmc08g0227881 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	2.1e-31	45.89	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	4.7e-31	45.14	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P0CT41	3.1e-27	40.41	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	3.1e-27	40.41	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	3.1e-27	40.41	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc08g0227881 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C6G5	5.7e-80	98.66	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5A7SS05	5.7e-80	98.66	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1276G00540 P...	[more]
A0A5D3C1A7	7.4e-80	97.99	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3BG92	1.3e-79	97.99	uncharacterized protein LOC103489499 OS=Cucumis melo OX=3656 GN=LOC103489499 PE=...	[more]
A0A5A7THC0	1.6e-79	97.99	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]

BLAST of Cmc08g0227881 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	1.4e-17	41.35	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..89 e-value: 5.9E-38 score: 131.8
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 91..149 e-value: 1.1E-22 score: 81.8
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 1..82 e-value: 1.6E-20 score: 73.6
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..82 score: 11.991465
None	No IPR available	PANTHER	PTHR24559:SF345	SUBFAMILY NOT NAMED	coord: 18..140
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 18..140
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..80 e-value: 5.52189E-43 score: 138.112
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0227881.1	Cmc08g0227881.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding