Cmc08g0227861 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0227861
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr08: 21265182 .. 21265535 (-)
RNA-Seq Expression	Cmc08g0227861
Synteny	Cmc08g0227861

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGAAGAGTTAAAATCTATGAATGAAAATGAAGTCTGGGATCTTGTTGAATTGCCTAAAGAAAGTAAAAGAGTTGGGTGTAAATGGATCTTTAAGACTAAACGTGACTCAAATGGCAATATTGAACAATACAAGGCTAGACTTGTTGTCAAAGGTTATACTCAGAAAGATGGCATTGACTACAAAGAAACATTTTCTCCTGTCTCGAAAAAGAACTCATTAAGAATTATTATGGCTTTGGTAGCTCATTATGATTTAGAGCTTCATCAAATGGATGTGAAAACTGTCTTTCTAAATGGAAATTTAGATGAAGAAGTGTTCATAGATCAACCAGAAACATATGGTGTGTAA

mRNA sequence

ATGAAAGAAGAGTTAAAATCTATGAATGAAAATGAAGTCTGGGATCTTGTTGAATTGCCTAAAGAAAGTAAAAGAGTTGGGTGTAAATGGATCTTTAAGACTAAACGTGACTCAAATGGCAATATTGAACAATACAAGGCTAGACTTGTTGTCAAAGGTTATACTCAGAAAGATGGCATTGACTACAAAGAAACATTTTCTCCTGTCTCGAAAAAGAACTCATTAAGAATTATTATGGCTTTGGTAGCTCATTATGATTTAGAGCTTCATCAAATGGATGTGAAAACTGTCTTTCTAAATGGAAATTTAGATGAAGAAGTGTTCATAGATCAACCAGAAACATATGGTGTGTAA

Coding sequence (CDS)

ATGAAAGAAGAGTTAAAATCTATGAATGAAAATGAAGTCTGGGATCTTGTTGAATTGCCTAAAGAAAGTAAAAGAGTTGGGTGTAAATGGATCTTTAAGACTAAACGTGACTCAAATGGCAATATTGAACAATACAAGGCTAGACTTGTTGTCAAAGGTTATACTCAGAAAGATGGCATTGACTACAAAGAAACATTTTCTCCTGTCTCGAAAAAGAACTCATTAAGAATTATTATGGCTTTGGTAGCTCATTATGATTTAGAGCTTCATCAAATGGATGTGAAAACTGTCTTTCTAAATGGAAATTTAGATGAAGAAGTGTTCATAGATCAACCAGAAACATATGGTGTGTAA

Protein sequence

MKEELKSMNENEVWDLVELPKESKRVGCKWIFKTKRDSNGNIEQYKARLVVKGYTQKDGIDYKETFSPVSKKNSLRIIMALVAHYDLELHQMDVKTVFLNGNLDEEVFIDQPETYGV

Homology

[Close]

BLAST of Cmc08g0227861 vs. NCBI nr
Match: TYK04469.1 (copia-like pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 219.9 bits (559), Expect = 1.1e-53
Identity = 106/117 (90.60%), Postives = 113/117 (96.58%), Query Frame = 0


Query: 1   MKEELKSMNENEVWDLVELPKESKRVGCKWIFKTKRDSNGNIEQYKARLVVKGYTQKDGI 60
           MKEELKSMN+NEVWDLVELPKESKRVGCKW+FKTKRDSNGNIE+YKARLV KGYTQKDGI
Sbjct: 528 MKEELKSMNDNEVWDLVELPKESKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGI 587

Query: 61  DYKETFSPVSKKNSLRIIMALVAHYDLELHQMDVKTVFLNGNLDEEVFIDQPETYGV 118
           DYKETFSPVSKK+SLRIIMALVAHYDLEL+QMDVKT FLNGNLDEEVF+DQPE + V
Sbjct: 588 DYKETFSPVSKKDSLRIIMALVAHYDLELYQMDVKTAFLNGNLDEEVFMDQPEGFMV 644

[Close]

BLAST of Cmc08g0227861 vs. NCBI nr
Match: KAA0052755.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 217.2 bits (552), Expect = 7.3e-53
Identity = 105/117 (89.74%), Postives = 112/117 (95.73%), Query Frame = 0


Query: 1   MKEELKSMNENEVWDLVELPKESKRVGCKWIFKTKRDSNGNIEQYKARLVVKGYTQKDGI 60
           MKEELKSMN+NEVWDLVELPK+SKRVGCKW+FKTKRDSNGNIE+ KARLV KGYTQKDGI
Sbjct: 541 MKEELKSMNDNEVWDLVELPKKSKRVGCKWVFKTKRDSNGNIERCKARLVAKGYTQKDGI 600

Query: 61  DYKETFSPVSKKNSLRIIMALVAHYDLELHQMDVKTVFLNGNLDEEVFIDQPETYGV 118
           DYKETFSPVSKK+SLRIIMALVAHYDLELHQMDVKT FLNGNLDEEVF+DQPE + V
Sbjct: 601 DYKETFSPVSKKDSLRIIMALVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFMV 657

[Close]

BLAST of Cmc08g0227861 vs. NCBI nr
Match: TYK04201.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 217.2 bits (552), Expect = 7.3e-53
Identity = 105/117 (89.74%), Postives = 112/117 (95.73%), Query Frame = 0


Query: 1   MKEELKSMNENEVWDLVELPKESKRVGCKWIFKTKRDSNGNIEQYKARLVVKGYTQKDGI 60
           MKEELKSMN+NEVWDLVELPK+SKRVGCKW+FKTKRDSNGNIE+ KARLV KGYTQKDGI
Sbjct: 541 MKEELKSMNDNEVWDLVELPKKSKRVGCKWVFKTKRDSNGNIERCKARLVAKGYTQKDGI 600

Query: 61  DYKETFSPVSKKNSLRIIMALVAHYDLELHQMDVKTVFLNGNLDEEVFIDQPETYGV 118
           DYKETFSPVSKK+SLRIIMALVAHYDLELHQMDVKT FLNGNLDEEVF+DQPE + V
Sbjct: 601 DYKETFSPVSKKDSLRIIMALVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFMV 657

[Close]

BLAST of Cmc08g0227861 vs. NCBI nr
Match: KAA0065779.1 (Integrase, catalytic core [Cucumis melo var. makuwa] >TYJ96519.1 Integrase, catalytic core [Cucumis melo var. makuwa])

HSP 1 Score: 216.5 bits (550), Expect = 1.2e-52
Identity = 106/117 (90.60%), Postives = 111/117 (94.87%), Query Frame = 0


Query: 1   MKEELKSMNENEVWDLVELPKESKRVGCKWIFKTKRDSNGNIEQYKARLVVKGYTQKDGI 60
           MKEELK MN+NEVWDLVELPKESKRVGCKWIFKTKRDSNGNIE+YKARLV KGYTQKDGI
Sbjct: 136 MKEELKFMNDNEVWDLVELPKESKRVGCKWIFKTKRDSNGNIERYKARLVAKGYTQKDGI 195

Query: 61  DYKETFSPVSKKNSLRIIMALVAHYDLELHQMDVKTVFLNGNLDEEVFIDQPETYGV 118
           DYKETFSPVSKKNSLRII+ALVAHYDLEL QMDVKT FLNGNLDEEVF+DQPE + V
Sbjct: 196 DYKETFSPVSKKNSLRIIVALVAHYDLELLQMDVKTAFLNGNLDEEVFMDQPEGFMV 252

[Close]

BLAST of Cmc08g0227861 vs. NCBI nr
Match: KAA0061857.1 (copia-like pol polyprotein [Cucumis melo var. makuwa] >TYK15399.1 copia-like pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 215.7 bits (548), Expect = 2.1e-52
Identity = 102/117 (87.18%), Postives = 112/117 (95.73%), Query Frame = 0


Query: 1   MKEELKSMNENEVWDLVELPKESKRVGCKWIFKTKRDSNGNIEQYKARLVVKGYTQKDGI 60
           MKEELKSMN+NEVWDLVELPKESKRVGCKW+F+TKRDSNGNIE+YKARLV KGYTQKDGI
Sbjct: 490 MKEELKSMNDNEVWDLVELPKESKRVGCKWVFETKRDSNGNIERYKARLVAKGYTQKDGI 549

Query: 61  DYKETFSPVSKKNSLRIIMALVAHYDLELHQMDVKTVFLNGNLDEEVFIDQPETYGV 118
           DYKETFSPVSKK+SLRIIMAL+AHYDL++HQMDVK  FLNGNLDEEVF+DQPE + V
Sbjct: 550 DYKETFSPVSKKDSLRIIMALIAHYDLKIHQMDVKIAFLNGNLDEEVFMDQPEGFMV 606

[Close]

BLAST of Cmc08g0227861 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 2.4e-30
Identity = 61/117 (52.14%), Postives = 89/117 (76.07%), Query Frame = 0


Query: 1   MKEELKSMNENEVWDLVELPKESKRVGCKWIFKTKRDSNGNIEQYKARLVVKGYTQKDGI 60
           M+EE++S+ +N  + LVELPK  + + CKW+FK K+D +  + +YKARLVVKG+ QK GI
Sbjct: 830 MQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGI 889

Query: 61  DYKETFSPVSKKNSLRIIMALVAHYDLELHQMDVKTVFLNGNLDEEVFIDQPETYGV 118
           D+ E FSPV K  S+R I++L A  DLE+ Q+DVKT FL+G+L+EE++++QPE + V
Sbjct: 890 DFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEV 946

[Close]

BLAST of Cmc08g0227861 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 110.9 bits (276), Expect = 9.7e-24
Identity = 51/110 (46.36%), Postives = 75/110 (68.18%), Query Frame = 0


Query: 4    ELKSMNENEVWDLVELPKESKRVGCKWIFKTKRDSNGNIEQYKARLVVKGYTQKDGIDYK 63
            EL +   N  W + + P+    V  +W+F  K +  GN  +YKARLV +G+TQK  IDY+
Sbjct: 913  ELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYE 972

Query: 64   ETFSPVSKKNSLRIIMALVAHYDLELHQMDVKTVFLNGNLDEEVFIDQPE 114
            ETF+PV++ +S R I++LV  Y+L++HQMDVKT FLNG L EE+++  P+
Sbjct: 973  ETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQ 1022

[Close]

BLAST of Cmc08g0227861 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 8.2e-23
Identity = 52/113 (46.02%), Postives = 71/113 (62.83%), Query Frame = 0


Query: 1    MKEELKSMNENEVWDLVELPKESKR-VGCKWIFKTKRDSNGNIEQYKARLVVKGYTQKDG 60
            M  E+ +   N  WDLV  P  S   VGC+WIF  K +S+G++ +YKARLV KGY Q+ G
Sbjct: 955  MGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQRPG 1014

Query: 61   IDYKETFSPVSKKNSLRIIMALVAHYDLELHQMDVKTVFLNGNLDEEVFIDQP 113
            +DY ETFSPV K  S+RI++ +       + Q+DV   FL G L +EV++ QP
Sbjct: 1015 LDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQP 1067

[Close]

BLAST of Cmc08g0227861 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 4.1e-22
Identity = 50/113 (44.25%), Postives = 70/113 (61.95%), Query Frame = 0


Query: 1    MKEELKSMNENEVWDLVELPKESKR-VGCKWIFKTKRDSNGNIEQYKARLVVKGYTQKDG 60
            M  E+ +   N  WDLV  P      VGC+WIF  K +S+G++ +YKARLV KGY Q+ G
Sbjct: 972  MGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPG 1031

Query: 61   IDYKETFSPVSKKNSLRIIMALVAHYDLELHQMDVKTVFLNGNLDEEVFIDQP 113
            +DY ETFSPV K  S+RI++ +       + Q+DV   FL G L ++V++ QP
Sbjct: 1032 LDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQP 1084

[Close]

BLAST of Cmc08g0227861 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.4e-14
Identity = 36/79 (45.57%), Postives = 56/79 (70.89%), Query Frame = 0


Query: 1   MKEELKSMNENEVWDLVELPKESKRVGCKWIFKTKRDSNGNIEQYKARLVVKGYTQKDGI 60
           M+EEL +++ N+ W LV  P     +GCKW+FKTK  S+G +++ KARLV KG+ Q++GI
Sbjct: 44  MQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGI 103

Query: 61  DYKETFSPVSKKNSLRIIM 80
            + ET+SPV +  ++R I+
Sbjct: 104 YFVETYSPVVRTATIRTIL 122

[Close]

BLAST of Cmc08g0227861 vs. ExPASy TrEMBL
Match: A0A5D3C256 (Copia-like pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00760 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 5.5e-54
Identity = 106/117 (90.60%), Postives = 113/117 (96.58%), Query Frame = 0


Query: 1   MKEELKSMNENEVWDLVELPKESKRVGCKWIFKTKRDSNGNIEQYKARLVVKGYTQKDGI 60
           MKEELKSMN+NEVWDLVELPKESKRVGCKW+FKTKRDSNGNIE+YKARLV KGYTQKDGI
Sbjct: 528 MKEELKSMNDNEVWDLVELPKESKRVGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGI 587

Query: 61  DYKETFSPVSKKNSLRIIMALVAHYDLELHQMDVKTVFLNGNLDEEVFIDQPETYGV 118
           DYKETFSPVSKK+SLRIIMALVAHYDLEL+QMDVKT FLNGNLDEEVF+DQPE + V
Sbjct: 588 DYKETFSPVSKKDSLRIIMALVAHYDLELYQMDVKTAFLNGNLDEEVFMDQPEGFMV 644

[Close]

BLAST of Cmc08g0227861 vs. ExPASy TrEMBL
Match: A0A5A7UG95 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43055G00040 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 3.5e-53
Identity = 105/117 (89.74%), Postives = 112/117 (95.73%), Query Frame = 0


Query: 1   MKEELKSMNENEVWDLVELPKESKRVGCKWIFKTKRDSNGNIEQYKARLVVKGYTQKDGI 60
           MKEELKSMN+NEVWDLVELPK+SKRVGCKW+FKTKRDSNGNIE+ KARLV KGYTQKDGI
Sbjct: 541 MKEELKSMNDNEVWDLVELPKKSKRVGCKWVFKTKRDSNGNIERCKARLVAKGYTQKDGI 600

Query: 61  DYKETFSPVSKKNSLRIIMALVAHYDLELHQMDVKTVFLNGNLDEEVFIDQPETYGV 118
           DYKETFSPVSKK+SLRIIMALVAHYDLELHQMDVKT FLNGNLDEEVF+DQPE + V
Sbjct: 601 DYKETFSPVSKKDSLRIIMALVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFMV 657

[Close]

BLAST of Cmc08g0227861 vs. ExPASy TrEMBL
Match: A0A5D3BWW5 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1856G00300 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 3.5e-53
Identity = 105/117 (89.74%), Postives = 112/117 (95.73%), Query Frame = 0


Query: 1   MKEELKSMNENEVWDLVELPKESKRVGCKWIFKTKRDSNGNIEQYKARLVVKGYTQKDGI 60
           MKEELKSMN+NEVWDLVELPK+SKRVGCKW+FKTKRDSNGNIE+ KARLV KGYTQKDGI
Sbjct: 541 MKEELKSMNDNEVWDLVELPKKSKRVGCKWVFKTKRDSNGNIERCKARLVAKGYTQKDGI 600

Query: 61  DYKETFSPVSKKNSLRIIMALVAHYDLELHQMDVKTVFLNGNLDEEVFIDQPETYGV 118
           DYKETFSPVSKK+SLRIIMALVAHYDLELHQMDVKT FLNGNLDEEVF+DQPE + V
Sbjct: 601 DYKETFSPVSKKDSLRIIMALVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFMV 657

[Close]

BLAST of Cmc08g0227861 vs. ExPASy TrEMBL
Match: A0A5D3BBX3 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G001690 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 6.0e-53
Identity = 106/117 (90.60%), Postives = 111/117 (94.87%), Query Frame = 0


Query: 1   MKEELKSMNENEVWDLVELPKESKRVGCKWIFKTKRDSNGNIEQYKARLVVKGYTQKDGI 60
           MKEELK MN+NEVWDLVELPKESKRVGCKWIFKTKRDSNGNIE+YKARLV KGYTQKDGI
Sbjct: 136 MKEELKFMNDNEVWDLVELPKESKRVGCKWIFKTKRDSNGNIERYKARLVAKGYTQKDGI 195

Query: 61  DYKETFSPVSKKNSLRIIMALVAHYDLELHQMDVKTVFLNGNLDEEVFIDQPETYGV 118
           DYKETFSPVSKKNSLRII+ALVAHYDLEL QMDVKT FLNGNLDEEVF+DQPE + V
Sbjct: 196 DYKETFSPVSKKNSLRIIVALVAHYDLELLQMDVKTAFLNGNLDEEVFMDQPEGFMV 252

[Close]

BLAST of Cmc08g0227861 vs. ExPASy TrEMBL
Match: A0A5A7V4M3 (Copia-like pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold571G00420 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.0e-52
Identity = 102/117 (87.18%), Postives = 112/117 (95.73%), Query Frame = 0


Query: 1   MKEELKSMNENEVWDLVELPKESKRVGCKWIFKTKRDSNGNIEQYKARLVVKGYTQKDGI 60
           MKEELKSMN+NEVWDLVELPKESKRVGCKW+F+TKRDSNGNIE+YKARLV KGYTQKDGI
Sbjct: 490 MKEELKSMNDNEVWDLVELPKESKRVGCKWVFETKRDSNGNIERYKARLVAKGYTQKDGI 549

Query: 61  DYKETFSPVSKKNSLRIIMALVAHYDLELHQMDVKTVFLNGNLDEEVFIDQPETYGV 118
           DYKETFSPVSKK+SLRIIMAL+AHYDL++HQMDVK  FLNGNLDEEVF+DQPE + V
Sbjct: 550 DYKETFSPVSKKDSLRIIMALIAHYDLKIHQMDVKIAFLNGNLDEEVFMDQPEGFMV 606

[Close]

BLAST of Cmc08g0227861 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 131.7 bits (330), Expect = 3.8e-31
Identity = 57/115 (49.57%), Postives = 83/115 (72.17%), Query Frame = 0


Query: 1   MKEELKSMNENEVWDLVELPKESKRVGCKWIFKTKRDSNGNIEQYKARLVVKGYTQKDGI 60
           M +E+ +M     W++  LP   K +GCKW++K K +S+G IE+YKARLV KGYTQ++GI
Sbjct: 102 MDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGI 161

Query: 61  DYKETFSPVSKKNSLRIIMALVAHYDLELHQMDVKTVFLNGNLDEEVFIDQPETY 116
           D+ ETFSPV K  S+++I+A+ A Y+  LHQ+D+   FLNG+LDEE+++  P  Y
Sbjct: 162 DFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGY 216

[Close]

BLAST of Cmc08g0227861 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 80.5 bits (197), Expect = 1.0e-15
Identity = 36/79 (45.57%), Postives = 56/79 (70.89%), Query Frame = 0


Query: 1   MKEELKSMNENEVWDLVELPKESKRVGCKWIFKTKRDSNGNIEQYKARLVVKGYTQKDGI 60
           M+EEL +++ N+ W LV  P     +GCKW+FKTK  S+G +++ KARLV KG+ Q++GI
Sbjct: 44  MQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGI 103

Query: 61  DYKETFSPVSKKNSLRIIM 80
            + ET+SPV +  ++R I+
Sbjct: 104 YFVETYSPVVRTATIRTIL 122

The following BLAST results are available for this feature:

BLAST of Cmc08g0227861 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK04469.1	1.1e-53	90.60	copia-like pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0052755.1	7.3e-53	89.74	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK04201.1	7.3e-53	89.74	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0065779.1	1.2e-52	90.60	Integrase, catalytic core [Cucumis melo var. makuwa] >TYJ96519.1 Integrase, cata...	[more]
KAA0061857.1	2.1e-52	87.18	copia-like pol polyprotein [Cucumis melo var. makuwa] >TYK15399.1 copia-like pol...	[more]

BLAST of Cmc08g0227861 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	2.4e-30	52.14	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	9.7e-24	46.36	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	8.2e-23	46.02	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	4.1e-22	44.25	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P92520	1.4e-14	45.57	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc08g0227861 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C256	5.5e-54	90.60	Copia-like pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A5A7UG95	3.5e-53	89.74	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3BWW5	3.5e-53	89.74	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3BBX3	6.0e-53	90.60	Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A5A7V4M3	1.0e-52	87.18	Copia-like pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]

BLAST of Cmc08g0227861 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	3.8e-31	49.57	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	1.0e-15	45.57	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 11..114 e-value: 2.8E-35 score: 122.1
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 2..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0227861.1	Cmc08g0227861.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding