Cmc08g0227781 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0227781
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr08: 21116442 .. 21117134 (+)
RNA-Seq Expression	Cmc08g0227781
Synteny	Cmc08g0227781

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGACATATCCCTTATGCATCAGCTGTTGGCAGCATGATGTATGCGATGTTATGTACTAGACCTGACATTTGTTATGCGGTGGAGATAGTCAGTAGATATCAATCTAATCCAAGATTAGCTCATTGGACTGCCGTTAAAACTATCCTCAAGTATCTTAGGATAACGATGGACTACATGCTTGTGTATGGTTCTAAGAATTTGATTCTTACAGGATACACAGACTCTGATTTTCAAACTGATAGAAATTCTAGGAAATCTACTTCAGGTTCAGTGTTCACTCTTAACGGAGGAGCTGTAGTTTGGAGAAGTATCAAGCAAGGATGTATTGCTGACTCCACCATGGAGGCAGAGTATGTCGCAGCTTGGGAAGCTGCCAAAGAGGCTGTTTGGCTTAGAAAATTTTTGACTAATTTGGAAGTAGTTCCAAACATGTCAAAGCCAATTACTCTTTACTGTGATAATAGTGGGGCTGTGGCTAATTCTAGCGAGCCTAGAAGCCACAAGCGTGGAAAGCATATTGAACACAAGTATCACTTGATTCGAGAGATAGTGCATCGAGGGGACTTGATCATCAAACAGATAGCTTCGACACACAATGTTGCTGATCCGTTTACAAAGCCCCTCAGGGCTAAGGTGTTTGAGGGTTACCTAGAGAGTCTAGGTCTACGTGGGATGCCACATTTAATCTAA

mRNA sequence

ATGAGACATATCCCTTATGCATCAGCTGTTGGCAGCATGATGTATGCGATGTTATGTACTAGACCTGACATTTGTTATGCGGTGGAGATAGTCAGTAGATATCAATCTAATCCAAGATTAGCTCATTGGACTGCCGTTAAAACTATCCTCAAGTATCTTAGGATAACGATGGACTACATGCTTGTGTATGGTTCTAAGAATTTGATTCTTACAGGATACACAGACTCTGATTTTCAAACTGATAGAAATTCTAGGAAATCTACTTCAGGTTCAGTGTTCACTCTTAACGGAGGAGCTGTAGTTTGGAGAAGTATCAAGCAAGGATGTATTGCTGACTCCACCATGGAGGCAGAGTATGTCGCAGCTTGGGAAGCTGCCAAAGAGGCTGTTTGGCTTAGAAAATTTTTGACTAATTTGGAAGTAGTTCCAAACATGTCAAAGCCAATTACTCTTTACTGTGATAATAGTGGGGCTGTGGCTAATTCTAGCGAGCCTAGAAGCCACAAGCGTGGAAAGCATATTGAACACAAGTATCACTTGATTCGAGAGATAGTGCATCGAGGGGACTTGATCATCAAACAGATAGCTTCGACACACAATGTTGCTGATCCGTTTACAAAGCCCCTCAGGGCTAAGGTGTTTGAGGGTTACCTAGAGAGTCTAGGTCTACGTGGGATGCCACATTTAATCTAA

Coding sequence (CDS)

ATGAGACATATCCCTTATGCATCAGCTGTTGGCAGCATGATGTATGCGATGTTATGTACTAGACCTGACATTTGTTATGCGGTGGAGATAGTCAGTAGATATCAATCTAATCCAAGATTAGCTCATTGGACTGCCGTTAAAACTATCCTCAAGTATCTTAGGATAACGATGGACTACATGCTTGTGTATGGTTCTAAGAATTTGATTCTTACAGGATACACAGACTCTGATTTTCAAACTGATAGAAATTCTAGGAAATCTACTTCAGGTTCAGTGTTCACTCTTAACGGAGGAGCTGTAGTTTGGAGAAGTATCAAGCAAGGATGTATTGCTGACTCCACCATGGAGGCAGAGTATGTCGCAGCTTGGGAAGCTGCCAAAGAGGCTGTTTGGCTTAGAAAATTTTTGACTAATTTGGAAGTAGTTCCAAACATGTCAAAGCCAATTACTCTTTACTGTGATAATAGTGGGGCTGTGGCTAATTCTAGCGAGCCTAGAAGCCACAAGCGTGGAAAGCATATTGAACACAAGTATCACTTGATTCGAGAGATAGTGCATCGAGGGGACTTGATCATCAAACAGATAGCTTCGACACACAATGTTGCTGATCCGTTTACAAAGCCCCTCAGGGCTAAGGTGTTTGAGGGTTACCTAGAGAGTCTAGGTCTACGTGGGATGCCACATTTAATCTAA

Protein sequence

MRHIPYASAVGSMMYAMLCTRPDICYAVEIVSRYQSNPRLAHWTAVKTILKYLRITMDYMLVYGSKNLILTGYTDSDFQTDRNSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAAWEAAKEAVWLRKFLTNLEVVPNMSKPITLYCDNSGAVANSSEPRSHKRGKHIEHKYHLIREIVHRGDLIIKQIASTHNVADPFTKPLRAKVFEGYLESLGLRGMPHLI

Homology

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BLAST of Cmc08g0227781 vs. NCBI nr
Match: KAA0041273.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK16069.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 443.0 bits (1138), Expect = 1.6e-120
Identity = 218/230 (94.78%), Postives = 219/230 (95.22%), Query Frame = 0


Query: 1   MRHIPYASAVGSMMYAMLCTRPDICYAVEIVSRYQSNPRLAHWTAVKTILKYLRITMDYM 60
           MRHIPYAS VGSMMYAMLCTRPDICYAVEIVSRYQSNPRLAHWTAVKTILKYLRITMDYM
Sbjct: 272 MRHIPYASDVGSMMYAMLCTRPDICYAVEIVSRYQSNPRLAHWTAVKTILKYLRITMDYM 331

Query: 61  LVYGSKNLILTGYTDSDFQTDRNSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 120
           LVYGSKNLILT YTDSDFQT RNSRKSTSGSVFTLNGG VVWRSIKQGCIADSTME EYV
Sbjct: 332 LVYGSKNLILTRYTDSDFQTHRNSRKSTSGSVFTLNGGVVVWRSIKQGCIADSTMEVEYV 391

Query: 121 AAWEAAKEAVWLRKFLTNLEVVPNMSKPITLYCDNSGAVANSSEPRSHKRGKHIEHKYHL 180
           AAW+AAKE VWLR FLTNLEVVPNMSKPITLYCDNSG VANSSEPRSHKRGKHIEHKYHL
Sbjct: 392 AAWKAAKEVVWLRNFLTNLEVVPNMSKPITLYCDNSGVVANSSEPRSHKRGKHIEHKYHL 451

Query: 181 IREIVHRGDLIIKQIASTHNVADPFTKPLRAKVFEGYLESLGLRGMPHLI 231
           IREIVHRGDLII QIASTHNVADPFT PLRAKVFEGYLESLGLR MPHLI
Sbjct: 452 IREIVHRGDLIITQIASTHNVADPFTNPLRAKVFEGYLESLGLREMPHLI 501

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BLAST of Cmc08g0227781 vs. NCBI nr
Match: KAA0046416.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 422.5 bits (1085), Expect = 2.3e-114
Identity = 209/229 (91.27%), Postives = 216/229 (94.32%), Query Frame = 0


Query: 1   MRHIPYASAVGSMMYAMLCTRPDICYAVEIVSRYQSNPRLAHWTAVKTILKYLRITMDYM 60
           MRHIPYASAVGS+MYAMLCTRPDICYAV IVSRYQSNP LAHWTAVKTILKYLR T DYM
Sbjct: 280 MRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYM 339

Query: 61  LVYGSKNLILTGYTDSDFQTDRNSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 120
           LVYGSK+LILTGYTDSDFQTDR+SRKSTSGSVFTLNGGAVVWRSIKQGCI DSTMEAEYV
Sbjct: 340 LVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIVDSTMEAEYV 399

Query: 121 AAWEAAKEAVWLRKFLTNLEVVPNMSKPITLYCDNSGAVANSSEPRSHKRGKHIEHKYHL 180
           AA EAAKEAVWLR FL +LEVVPNMSKPITLYCDNSGAVANS EPRSHKRGKHIE KYHL
Sbjct: 400 AACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIERKYHL 459

Query: 181 IREIVHRGDLIIKQIASTHNVADPFTKPLRAKVFEGYLESLGLRGMPHL 230
           IREIVHRGD+I+ QIASTHNVADPFTKPL AKVFEG+LESLGLR MPHL
Sbjct: 460 IREIVHRGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHL 508

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BLAST of Cmc08g0227781 vs. NCBI nr
Match: TYJ97618.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 421.8 bits (1083), Expect = 3.8e-114
Identity = 209/229 (91.27%), Postives = 216/229 (94.32%), Query Frame = 0


Query: 1    MRHIPYASAVGSMMYAMLCTRPDICYAVEIVSRYQSNPRLAHWTAVKTILKYLRITMDYM 60
            MRHIPYASAVGS+MYAMLCTRPDICYAV IVSRYQSNP LAHWTAVKTILKYLR T DY 
Sbjct: 899  MRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYT 958

Query: 61   LVYGSKNLILTGYTDSDFQTDRNSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 120
            LVYGSK+LILTGYTDSDFQTDR+SRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV
Sbjct: 959  LVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 1018

Query: 121  AAWEAAKEAVWLRKFLTNLEVVPNMSKPITLYCDNSGAVANSSEPRSHKRGKHIEHKYHL 180
            AA EAAKEAVWLR FL +LEVVPNMSKPITLYCDNSGAVANS EPRSHKRGKHIE KYHL
Sbjct: 1019 AACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIERKYHL 1078

Query: 181  IREIVHRGDLIIKQIASTHNVADPFTKPLRAKVFEGYLESLGLRGMPHL 230
            IREIVHRGD+I+ QIASTHNVADPFTKPL AKVFEG+LESLGLR MPHL
Sbjct: 1079 IREIVHRGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHL 1127

[Close]

BLAST of Cmc08g0227781 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 421.8 bits (1083), Expect = 3.8e-114
Identity = 209/229 (91.27%), Postives = 216/229 (94.32%), Query Frame = 0


Query: 1    MRHIPYASAVGSMMYAMLCTRPDICYAVEIVSRYQSNPRLAHWTAVKTILKYLRITMDYM 60
            MRHIPYASAVGS+MYAMLCTRPDICYAV IVSRYQSNP LAHWTAVKTILKYLR T DY 
Sbjct: 1113 MRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYT 1172

Query: 61   LVYGSKNLILTGYTDSDFQTDRNSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 120
            LVYGSK+LILTGYTDSDFQTDR+SRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV
Sbjct: 1173 LVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 1232

Query: 121  AAWEAAKEAVWLRKFLTNLEVVPNMSKPITLYCDNSGAVANSSEPRSHKRGKHIEHKYHL 180
            AA EAAKEAVWLR FL +LEVVPNMSKPITLYCDNSGAVANS EPRSHKRGKHIE KYHL
Sbjct: 1233 AACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIERKYHL 1292

Query: 181  IREIVHRGDLIIKQIASTHNVADPFTKPLRAKVFEGYLESLGLRGMPHL 230
            IREIVHRGD+I+ QIASTHNVADPFTKPL AKVFEG+LESLGLR MPHL
Sbjct: 1293 IREIVHRGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHL 1341

[Close]

BLAST of Cmc08g0227781 vs. NCBI nr
Match: TYK19524.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 421.8 bits (1083), Expect = 3.8e-114
Identity = 209/229 (91.27%), Postives = 216/229 (94.32%), Query Frame = 0


Query: 1   MRHIPYASAVGSMMYAMLCTRPDICYAVEIVSRYQSNPRLAHWTAVKTILKYLRITMDYM 60
           MRHIPYASAVGS+MYAMLCTRPDICYAV IVSRYQSNP LAHWTAVKTILKYLR T DY 
Sbjct: 72  MRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYT 131

Query: 61  LVYGSKNLILTGYTDSDFQTDRNSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 120
           LVYGSK+LILTGYTDSDFQTDR+SRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV
Sbjct: 132 LVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 191

Query: 121 AAWEAAKEAVWLRKFLTNLEVVPNMSKPITLYCDNSGAVANSSEPRSHKRGKHIEHKYHL 180
           AA EAAKEAVWLR FL +LEVVPNMSKPITLYCDNSGAVANS EPRSHKRGKHIE KYHL
Sbjct: 192 AACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIERKYHL 251

Query: 181 IREIVHRGDLIIKQIASTHNVADPFTKPLRAKVFEGYLESLGLRGMPHL 230
           IREIVHRGD+I+ QIASTHNVADPFTKPL AKVFEG+LESLGLR MPHL
Sbjct: 252 IREIVHRGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHL 300

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BLAST of Cmc08g0227781 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.2e-49
Identity = 104/223 (46.64%), Postives = 142/223 (63.68%), Query Frame = 0


Query: 1    MRHIPYASAVGSMMYAMLCTRPDICYAVEIVSRYQSNPRLAHWTAVKTILKYLRITMDYM 60
            M  +PY+SAVGS+MYAM+CTRPDI +AV +VSR+  NP   HW AVK IL+YLR T    
Sbjct: 1106 MAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDC 1165

Query: 61   LVYGSKNLILTGYTDSDFQTDRNSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 120
            L +G  + IL GYTD+D   D ++RKS++G +FT +GGA+ W+S  Q C+A ST EAEY+
Sbjct: 1166 LCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYI 1225

Query: 121  AAWEAAKEAVWLRKFLTNLEVVPNMSKPITLYCDNSGAVANSSEPRSHKRGKHIEHKYHL 180
            AA E  KE +WL++FL  L +     K   +YCD+  A+  S     H R KHI+ +YH 
Sbjct: 1226 AATETGKEMIWLKRFLQELGL---HQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHW 1285

Query: 181  IREIVHRGDLIIKQIASTHNVADPFTKPLRAKVFEGYLESLGL 224
            IRE+V    L + +I++  N AD  TK +    FE   E +G+
Sbjct: 1286 IREMVDDESLKVLKISTNENPADMLTKVVPRNKFELCKELVGM 1325

[Close]

BLAST of Cmc08g0227781 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 165.2 bits (417), Expect = 8.5e-40
Identity = 90/224 (40.18%), Postives = 134/224 (59.82%), Query Frame = 0


Query: 5    PYASAVGSMMYAMLCTRPDICYAVEIVSRYQSNPRLAHWTAVKTILKYLRITMDYMLVYG 64
            P  S +G +MY MLCTRPD+  AV I+SRY S      W  +K +L+YL+ T+D  L++ 
Sbjct: 1180 PCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIF- 1239

Query: 65   SKNLI----LTGYTDSDFQTDRNSRKSTSGSVFTL-NGGAVVWRSIKQGCIADSTMEAEY 124
             KNL     + GY DSD+      RKST+G +F + +   + W + +Q  +A S+ EAEY
Sbjct: 1240 KKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEY 1299

Query: 125  VAAWEAAKEAVWLRKFLTNLEVVPNMSKPITLYCDNSGAVANSSEPRSHKRGKHIEHKYH 184
            +A +EA +EA+WL+  LT++ +   +  PI +Y DN G ++ ++ P  HKR KHI+ KYH
Sbjct: 1300 MALFEAVREALWLKFLLTSINI--KLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYH 1359

Query: 185  LIREIVHRGDLIIKQIASTHNVADPFTKPLRAKVFEGYLESLGL 224
              RE V    + ++ I + + +AD FTKPL A  F    + LGL
Sbjct: 1360 FAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGL 1400

[Close]

BLAST of Cmc08g0227781 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.7e-30
Identity = 79/223 (35.43%), Postives = 115/223 (51.57%), Query Frame = 0


Query: 6    YASAVGSMMYAMLCTRPDICYAVEIVSRYQSNPRLAHWTAVKTILKYLRITMDYMLVYGS 65
            Y   VGS+ Y +  TRPD+ YAV  +S+Y   P   HW A+K +L+YL  T D+ +    
Sbjct: 1228 YRGIVGSLQY-LAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKK 1287

Query: 66   KN-LILTGYTDSDFQTDRNSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAAWE 125
             N L L  Y+D+D+  D +   ST+G +  L    + W S KQ  +  S+ EAEY +   
Sbjct: 1288 GNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVAN 1347

Query: 126  AAKEAVWLRKFLTNLEVVPNMSKPITLYCDNSGAVANSSEPRSHKRGKHIEHKYHLIREI 185
             + E  W+   LT L +   +S P  +YCDN GA    + P  H R KHI   YH IR  
Sbjct: 1348 TSSELQWICSLLTELGI--QLSHPPVIYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQ 1407

Query: 186  VHRGDLIIKQIASTHNVADPFTKPLRAKVFEGYLESLGLRGMP 228
            V  G L +  +++   +AD  TKPL    F+ +   +G+  +P
Sbjct: 1408 VQSGALRVVHVSTHDQLADTLTKPLSRVAFQNFSRKIGVIKVP 1447

[Close]

BLAST of Cmc08g0227781 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 5.2e-29
Identity = 77/223 (34.53%), Postives = 116/223 (52.02%), Query Frame = 0


Query: 6    YASAVGSMMYAMLCTRPDICYAVEIVSRYQSNPRLAHWTAVKTILKYLRITMDYMLVYGS 65
            Y   VGS+ Y +  TRPDI YAV  +S++   P   H  A+K IL+YL  T ++ +    
Sbjct: 1245 YRGIVGSLQY-LAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKK 1304

Query: 66   KN-LILTGYTDSDFQTDRNSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAAWE 125
             N L L  Y+D+D+  D++   ST+G +  L    + W S KQ  +  S+ EAEY +   
Sbjct: 1305 GNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVAN 1364

Query: 126  AAKEAVWLRKFLTNLEVVPNMSKPITLYCDNSGAVANSSEPRSHKRGKHIEHKYHLIREI 185
             + E  W+   LT L +   +++P  +YCDN GA    + P  H R KHI   YH IR  
Sbjct: 1365 TSSEMQWICSLLTELGI--RLTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQ 1424

Query: 186  VHRGDLIIKQIASTHNVADPFTKPLRAKVFEGYLESLGLRGMP 228
            V  G L +  +++   +AD  TKPL    F+ +   +G+  +P
Sbjct: 1425 VQSGALRVVHVSTHDQLADTLTKPLSRTAFQNFASKIGVTRVP 1464

[Close]

BLAST of Cmc08g0227781 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 7.5e-28
Identity = 65/133 (48.87%), Postives = 91/133 (68.42%), Query Frame = 0


Query: 1   MRHIPYASAVGSMMYAMLCTRPDICYAVEIVSRYQSNPRLAHWTAVKTILKYLRITMDYM 60
           M+++PY SAVG++MY M+ TRPD+  AV ++S++ S+P   HW A+K +L+YL+ T  Y 
Sbjct: 1   MKNVPYLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYG 60

Query: 61  LVYGSKNLI-LTGYTDSDFQTDRNSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEY 120
           L +       L GY+D+D+  D  SR+STSG +F LNGG V WRS KQ  +A S+ E EY
Sbjct: 61  LEFTRAGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEY 120

Query: 121 VAAWEAAKEAVWL 133
           +A  EA +EAVWL
Sbjct: 121 MALSEATQEAVWL 133

[Close]

BLAST of Cmc08g0227781 vs. ExPASy TrEMBL
Match: A0A5D3D0T2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold32G00870 PE=4 SV=1)

HSP 1 Score: 443.0 bits (1138), Expect = 7.8e-121
Identity = 218/230 (94.78%), Postives = 219/230 (95.22%), Query Frame = 0


Query: 1   MRHIPYASAVGSMMYAMLCTRPDICYAVEIVSRYQSNPRLAHWTAVKTILKYLRITMDYM 60
           MRHIPYAS VGSMMYAMLCTRPDICYAVEIVSRYQSNPRLAHWTAVKTILKYLRITMDYM
Sbjct: 272 MRHIPYASDVGSMMYAMLCTRPDICYAVEIVSRYQSNPRLAHWTAVKTILKYLRITMDYM 331

Query: 61  LVYGSKNLILTGYTDSDFQTDRNSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 120
           LVYGSKNLILT YTDSDFQT RNSRKSTSGSVFTLNGG VVWRSIKQGCIADSTME EYV
Sbjct: 332 LVYGSKNLILTRYTDSDFQTHRNSRKSTSGSVFTLNGGVVVWRSIKQGCIADSTMEVEYV 391

Query: 121 AAWEAAKEAVWLRKFLTNLEVVPNMSKPITLYCDNSGAVANSSEPRSHKRGKHIEHKYHL 180
           AAW+AAKE VWLR FLTNLEVVPNMSKPITLYCDNSG VANSSEPRSHKRGKHIEHKYHL
Sbjct: 392 AAWKAAKEVVWLRNFLTNLEVVPNMSKPITLYCDNSGVVANSSEPRSHKRGKHIEHKYHL 451

Query: 181 IREIVHRGDLIIKQIASTHNVADPFTKPLRAKVFEGYLESLGLRGMPHLI 231
           IREIVHRGDLII QIASTHNVADPFT PLRAKVFEGYLESLGLR MPHLI
Sbjct: 452 IREIVHRGDLIITQIASTHNVADPFTNPLRAKVFEGYLESLGLREMPHLI 501

[Close]

BLAST of Cmc08g0227781 vs. ExPASy TrEMBL
Match: A0A5A7TWI0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G001610 PE=4 SV=1)

HSP 1 Score: 422.5 bits (1085), Expect = 1.1e-114
Identity = 209/229 (91.27%), Postives = 216/229 (94.32%), Query Frame = 0


Query: 1   MRHIPYASAVGSMMYAMLCTRPDICYAVEIVSRYQSNPRLAHWTAVKTILKYLRITMDYM 60
           MRHIPYASAVGS+MYAMLCTRPDICYAV IVSRYQSNP LAHWTAVKTILKYLR T DYM
Sbjct: 280 MRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYM 339

Query: 61  LVYGSKNLILTGYTDSDFQTDRNSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 120
           LVYGSK+LILTGYTDSDFQTDR+SRKSTSGSVFTLNGGAVVWRSIKQGCI DSTMEAEYV
Sbjct: 340 LVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIVDSTMEAEYV 399

Query: 121 AAWEAAKEAVWLRKFLTNLEVVPNMSKPITLYCDNSGAVANSSEPRSHKRGKHIEHKYHL 180
           AA EAAKEAVWLR FL +LEVVPNMSKPITLYCDNSGAVANS EPRSHKRGKHIE KYHL
Sbjct: 400 AACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIERKYHL 459

Query: 181 IREIVHRGDLIIKQIASTHNVADPFTKPLRAKVFEGYLESLGLRGMPHL 230
           IREIVHRGD+I+ QIASTHNVADPFTKPL AKVFEG+LESLGLR MPHL
Sbjct: 460 IREIVHRGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHL 508

[Close]

BLAST of Cmc08g0227781 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 421.8 bits (1083), Expect = 1.9e-114
Identity = 209/229 (91.27%), Postives = 216/229 (94.32%), Query Frame = 0


Query: 1    MRHIPYASAVGSMMYAMLCTRPDICYAVEIVSRYQSNPRLAHWTAVKTILKYLRITMDYM 60
            MRHIPYASAVGS+MYAMLCTRPDICYAV IVSRYQSNP LAHWTAVKTILKYLR T DY 
Sbjct: 1114 MRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYT 1173

Query: 61   LVYGSKNLILTGYTDSDFQTDRNSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 120
            LVYGSK+LILTGYTDSDFQTDR+SRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV
Sbjct: 1174 LVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 1233

Query: 121  AAWEAAKEAVWLRKFLTNLEVVPNMSKPITLYCDNSGAVANSSEPRSHKRGKHIEHKYHL 180
            AA EAAKEAVWLR FL +LEVVPNMSKPITLYCDNSGAVANS EPRSHKRGKHIE KYHL
Sbjct: 1234 AACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIERKYHL 1293

Query: 181  IREIVHRGDLIIKQIASTHNVADPFTKPLRAKVFEGYLESLGLRGMPHL 230
            IREIVHRGD+I+ QIASTHNVADPFTKPL AKVFEG+LESLGLR MPHL
Sbjct: 1294 IREIVHRGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHL 1342

[Close]

BLAST of Cmc08g0227781 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 421.8 bits (1083), Expect = 1.9e-114
Identity = 209/229 (91.27%), Postives = 216/229 (94.32%), Query Frame = 0


Query: 1    MRHIPYASAVGSMMYAMLCTRPDICYAVEIVSRYQSNPRLAHWTAVKTILKYLRITMDYM 60
            MRHIPYASAVGS+MYAMLCTRPDICYAV IVSRYQSNP LAHWTAVKTILKYLR T DY 
Sbjct: 1114 MRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYT 1173

Query: 61   LVYGSKNLILTGYTDSDFQTDRNSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 120
            LVYGSK+LILTGYTDSDFQTDR+SRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV
Sbjct: 1174 LVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 1233

Query: 121  AAWEAAKEAVWLRKFLTNLEVVPNMSKPITLYCDNSGAVANSSEPRSHKRGKHIEHKYHL 180
            AA EAAKEAVWLR FL +LEVVPNMSKPITLYCDNSGAVANS EPRSHKRGKHIE KYHL
Sbjct: 1234 AACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIERKYHL 1293

Query: 181  IREIVHRGDLIIKQIASTHNVADPFTKPLRAKVFEGYLESLGLRGMPHL 230
            IREIVHRGD+I+ QIASTHNVADPFTKPL AKVFEG+LESLGLR MPHL
Sbjct: 1294 IREIVHRGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHL 1342

[Close]

BLAST of Cmc08g0227781 vs. ExPASy TrEMBL
Match: A0A5D3BHG7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold639G00150 PE=4 SV=1)

HSP 1 Score: 421.8 bits (1083), Expect = 1.9e-114
Identity = 209/229 (91.27%), Postives = 216/229 (94.32%), Query Frame = 0


Query: 1    MRHIPYASAVGSMMYAMLCTRPDICYAVEIVSRYQSNPRLAHWTAVKTILKYLRITMDYM 60
            MRHIPYASAVGS+MYAMLCTRPDICYAV IVSRYQSNP LAHWTAVKTILKYLR T DY 
Sbjct: 899  MRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYT 958

Query: 61   LVYGSKNLILTGYTDSDFQTDRNSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 120
            LVYGSK+LILTGYTDSDFQTDR+SRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV
Sbjct: 959  LVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 1018

Query: 121  AAWEAAKEAVWLRKFLTNLEVVPNMSKPITLYCDNSGAVANSSEPRSHKRGKHIEHKYHL 180
            AA EAAKEAVWLR FL +LEVVPNMSKPITLYCDNSGAVANS EPRSHKRGKHIE KYHL
Sbjct: 1019 AACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIERKYHL 1078

Query: 181  IREIVHRGDLIIKQIASTHNVADPFTKPLRAKVFEGYLESLGLRGMPHL 230
            IREIVHRGD+I+ QIASTHNVADPFTKPL AKVFEG+LESLGLR MPHL
Sbjct: 1079 IREIVHRGDVIVTQIASTHNVADPFTKPLTAKVFEGHLESLGLRDMPHL 1127

[Close]

BLAST of Cmc08g0227781 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 116.7 bits (291), Expect = 2.5e-26
Identity = 81/231 (35.06%), Postives = 129/231 (55.84%), Query Frame = 0


Query: 6   YASAVGSMMYAMLCTRPDICYAVEIVSRYQSNPRLAHWTAVKTILKYLRITMDYMLVYGS 65
           Y   +G +MY  + TR DI +AV  +S++   PRLAH  AV  IL Y++ T+   L Y S
Sbjct: 378 YRRLIGRLMYLQI-TRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSS 437

Query: 66  K-NLILTGYTDSDFQTDRNSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAAWE 125
           +  + L  ++D+ FQ+ +++R+ST+G    L    + W+S KQ  ++ S+ EAEY A   
Sbjct: 438 QAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSF 497

Query: 126 AAKEAVWLRKFLTNLEVVPNMSKPITLYCDNSGAVANSSEPRSHKRGKHIEHKYHLIRE- 185
           A  E +WL +F   L++   +SKP  L+CDN+ A+  ++    H+R KHIE   H +RE 
Sbjct: 498 ATDEMMWLAQFFRELQL--PLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRER 557

Query: 186 IVHRGDLIIKQIASTHNVADPFTKPLRAKVFEG---YLESL-GLRGMPHLI 231
            V++  L        ++  D FT+ L + +  G   Y+ S+ GL G+  LI
Sbjct: 558 SVYQATL--SYSFQAYDEQDGFTEYL-SPILRGTIMYIVSMFGLAGLEALI 602

[Close]

BLAST of Cmc08g0227781 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 67.4 bits (163), Expect = 1.7e-11
Identity = 41/127 (32.28%), Postives = 70/127 (55.12%), Query Frame = 0


Query: 6   YASAVGSMMYAMLCTRPDICYAVEIVSRYQSNPRLAHWTAVKTILKYLRITMDY-MLVYG 65
           + S VG++ Y  L TRPDI YAV IV +    P LA +  +K +L+Y++ T+ + + ++ 
Sbjct: 100 FRSIVGALQYLTL-TRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHK 159

Query: 66  SKNLILTGYTDSDFQTDRNSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYVAAWE 125
           +  L +  + DSD+    ++R+ST+G    L    + W + +Q  ++ S+ E EY A   
Sbjct: 160 NSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALAL 219

Query: 126 AAKEAVW 132
            A E  W
Sbjct: 220 TAAELTW 225

[Close]

BLAST of Cmc08g0227781 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 43.5 bits (101), Expect = 2.7e-04
Identity = 25/72 (34.72%), Postives = 43/72 (59.72%), Query Frame = 0


Query: 20 TRPDICYAVEIVSRYQSNPRLAHWTAVKTILKYLRITMDYMLVY-GSKNLILTGYTDSDF 79
          TRPD+ +AV  +S++ S  R A   AV  +L Y++ T+   L Y  + +L L  + DSD+
Sbjct: 6  TRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFADSDW 65

Query: 80 QTDRNSRKSTSG 91
           +  ++R+S +G
Sbjct: 66 ASCPDTRRSVTG 77

The following BLAST results are available for this feature:

BLAST of Cmc08g0227781 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0041273.1	1.6e-120	94.78	gag/pol protein [Cucumis melo var. makuwa] >TYK16069.1 gag/pol protein [Cucumis ...	[more]
KAA0046416.1	2.3e-114	91.27	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYJ97618.1	3.8e-114	91.27	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0048404.1	3.8e-114	91.27	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK19524.1	3.8e-114	91.27	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc08g0227781 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.2e-49	46.64	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	8.5e-40	40.18	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	2.7e-30	35.43	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	5.2e-29	34.53	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P0CV72	7.5e-28	48.87	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]

BLAST of Cmc08g0227781 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D0T2	7.8e-121	94.78	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold32G00870...	[more]
A0A5A7TWI0	1.1e-114	91.27	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G0016...	[more]
A0A5A7SMH8	1.9e-114	91.27	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5D3CPJ6	1.9e-114	91.27	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004...	[more]
A0A5D3BHG7	1.9e-114	91.27	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold639G0015...	[more]

BLAST of Cmc08g0227781 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	2.5e-26	35.06	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	1.7e-11	32.28	DNA/RNA polymerases superfamily protein	[more]
ATMG00240.1	2.7e-04	34.72	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 95..215
None	No IPR available	PANTHER	PTHR11439:SF343	SUBFAMILY NOT NAMED	coord: 95..215
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 71..209 e-value: 3.91111E-65 score: 196.535

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0227781.1	Cmc08g0227781.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding