Cmc08g0227771 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0227771
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr08: 21115808 .. 21116065 (+)
RNA-Seq Expression	Cmc08g0227771
Synteny	Cmc08g0227771

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGAGACTTTCTCACCTGTTGTCATTGTTAAAGTCTATTCGAATACTTTTGGCTGCATATTTTGACTATGAGATTTGGCAAATGGATGTAAAGACTGCCTTTTTGAATGGCAATCTTAAGGAGACCATCTATATGCAACAACCAGAAGGATTAATAATTCCAGATCAAGAGCAAAAGGTTTGCAAGCTTAATCGTTCTATTTATGGATTGAAACAAGCTTCTCGATCTTGGAACATAAGATTTGATACCGCATAA

mRNA sequence

ATGAGGAGACTTTCTCACCTGTTGTCATTGTTAAAGTCTATTCGAATACTTTTGGCTGCATATTTTGACTATGAGATTTGGCAAATGGATGTAAAGACTGCCTTTTTGAATGGCAATCTTAAGGAGACCATCTATATGCAACAACCAGAAGGATTAATAATTCCAGATCAAGAGCAAAAGGTTTGCAAGCTTAATCGTTCTATTTATGGATTGAAACAAGCTTCTCGATCTTGGAACATAAGATTTGATACCGCATAA

Coding sequence (CDS)

ATGAGGAGACTTTCTCACCTGTTGTCATTGTTAAAGTCTATTCGAATACTTTTGGCTGCATATTTTGACTATGAGATTTGGCAAATGGATGTAAAGACTGCCTTTTTGAATGGCAATCTTAAGGAGACCATCTATATGCAACAACCAGAAGGATTAATAATTCCAGATCAAGAGCAAAAGGTTTGCAAGCTTAATCGTTCTATTTATGGATTGAAACAAGCTTCTCGATCTTGGAACATAAGATTTGATACCGCATAA

Protein sequence

MRRLSHLLSLLKSIRILLAAYFDYEIWQMDVKTAFLNGNLKETIYMQQPEGLIIPDQEQKVCKLNRSIYGLKQASRSWNIRFDTA

Homology

[Close]

BLAST of Cmc08g0227771 vs. NCBI nr
Match: TYJ97618.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 145.2 bits (365), Expect = 2.6e-31
Identity = 71/80 (88.75%), Postives = 76/80 (95.00%), Query Frame = 0


Query: 8   LSLLKSIRILL--AAYFDYEIWQMDVKTAFLNGNLKETIYMQQPEGLIIPDQEQKVCKLN 67
           +++LKSIRILL  AAYFDYEIWQMDVKTAFLNGNL+ETIYMQQPEG IIP QEQK+CKLN
Sbjct: 692 VAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLN 751

Query: 68  RSIYGLKQASRSWNIRFDTA 86
           RSIYGLKQASRSWNIRFDTA
Sbjct: 752 RSIYGLKQASRSWNIRFDTA 771

[Close]

BLAST of Cmc08g0227771 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 145.2 bits (365), Expect = 2.6e-31
Identity = 71/80 (88.75%), Postives = 76/80 (95.00%), Query Frame = 0


Query: 8   LSLLKSIRILL--AAYFDYEIWQMDVKTAFLNGNLKETIYMQQPEGLIIPDQEQKVCKLN 67
           +++LKSIRILL  AAYFDYEIWQMDVKTAFLNGNL+ETIYMQQPEG IIP QEQK+CKLN
Sbjct: 906 VAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLN 965

Query: 68  RSIYGLKQASRSWNIRFDTA 86
           RSIYGLKQASRSWNIRFDTA
Sbjct: 966 RSIYGLKQASRSWNIRFDTA 985

[Close]

BLAST of Cmc08g0227771 vs. NCBI nr
Match: TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 145.2 bits (365), Expect = 2.6e-31
Identity = 71/80 (88.75%), Postives = 76/80 (95.00%), Query Frame = 0


Query: 8   LSLLKSIRILL--AAYFDYEIWQMDVKTAFLNGNLKETIYMQQPEGLIIPDQEQKVCKLN 67
           +++LKSIRILL  AAYFDYEIWQMDVKTAFLNGNL+ETIYMQQPEG IIP QEQK+CKLN
Sbjct: 907 VAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLN 966

Query: 68  RSIYGLKQASRSWNIRFDTA 86
           RSIYGLKQASRSWNIRFDTA
Sbjct: 967 RSIYGLKQASRSWNIRFDTA 986

[Close]

BLAST of Cmc08g0227771 vs. NCBI nr
Match: KAA0054490.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 145.2 bits (365), Expect = 2.6e-31
Identity = 71/80 (88.75%), Postives = 76/80 (95.00%), Query Frame = 0


Query: 8   LSLLKSIRILL--AAYFDYEIWQMDVKTAFLNGNLKETIYMQQPEGLIIPDQEQKVCKLN 67
           +++LKSIRILL  AAYFDYEIWQMDVKTAFLNGNL+ETIYMQQPEG IIP QEQK+CKLN
Sbjct: 907 VAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLN 966

Query: 68  RSIYGLKQASRSWNIRFDTA 86
           RSIYGLKQASRSWNIRFDTA
Sbjct: 967 RSIYGLKQASRSWNIRFDTA 986

[Close]

BLAST of Cmc08g0227771 vs. NCBI nr
Match: KAA0061339.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 145.2 bits (365), Expect = 2.6e-31
Identity = 71/80 (88.75%), Postives = 76/80 (95.00%), Query Frame = 0


Query: 8   LSLLKSIRILL--AAYFDYEIWQMDVKTAFLNGNLKETIYMQQPEGLIIPDQEQKVCKLN 67
           +++LKSIRILL  AAYFDYEIWQMDVKTAFLNGNL+ETIYMQQPEG IIP QEQK+CKLN
Sbjct: 533 VAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLN 592

Query: 68  RSIYGLKQASRSWNIRFDTA 86
           RSIYGLKQASRSWNIRFDTA
Sbjct: 593 RSIYGLKQASRSWNIRFDTA 612

[Close]

BLAST of Cmc08g0227771 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 4.9e-17
Identity = 42/76 (55.26%), Postives = 58/76 (76.32%), Query Frame = 0


Query: 11  LKSIRIL--LAAYFDYEIWQMDVKTAFLNGNLKETIYMQQPEGLIIPDQEQKVCKLNRSI 70
           + SIR +  LAA  D E+ Q+DVKTAFL+G+L+E IYM+QPEG  +  ++  VCKLN+S+
Sbjct: 901 MTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSL 960

Query: 71  YGLKQASRSWNIRFDT 85
           YGLKQA R W ++FD+
Sbjct: 961 YGLKQAPRQWYMKFDS 976

[Close]

BLAST of Cmc08g0227771 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 75.1 bits (183), Expect = 4.3e-13
Identity = 40/77 (51.95%), Postives = 51/77 (66.23%), Query Frame = 0


Query: 11   LKSIRILLAAYFDY--EIWQMDVKTAFLNGNLKETIYMQQPEGLIIPDQEQKVCKLNRSI 70
            + S R +L+    Y  ++ QMDVKTAFLNG LKE IYM+ P+G  I      VCKLN++I
Sbjct: 981  ISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQG--ISCNSDNVCKLNKAI 1040

Query: 71   YGLKQASRSWNIRFDTA 86
            YGLKQA+R W   F+ A
Sbjct: 1041 YGLKQAARCWFEVFEQA 1055

[Close]

BLAST of Cmc08g0227771 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.8e-11
Identity = 34/74 (45.95%), Postives = 46/74 (62.16%), Query Frame = 0


Query: 13   SIRILLAAYFD--YEIWQMDVKTAFLNGNLKETIYMQQPEGLIIPDQEQKVCKLNRSIYG 72
            SIRI+L    D  + I Q+DV  AFL G L + +YM QP G +  D+   VC+L ++IYG
Sbjct: 1029 SIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYG 1088

Query: 73   LKQASRSWNIRFDT 85
            LKQA R+W +   T
Sbjct: 1089 LKQAPRAWYVELRT 1102

[Close]

BLAST of Cmc08g0227771 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.1e-11
Identity = 34/70 (48.57%), Postives = 45/70 (64.29%), Query Frame = 0


Query: 13   SIRILLAAYFD--YEIWQMDVKTAFLNGNLKETIYMQQPEGLIIPDQEQKVCKLNRSIYG 72
            SIRI+L    D  + I Q+DV  AFL G L + +YM QP G I  D+   VCKL +++YG
Sbjct: 1046 SIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYG 1105

Query: 73   LKQASRSWNI 81
            LKQA R+W +
Sbjct: 1106 LKQAPRAWYV 1115

[Close]

BLAST of Cmc08g0227771 vs. ExPASy Swiss-Prot
Match: Q12491 (Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-B PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 8.6e-06
Identity = 27/73 (36.99%), Postives = 46/73 (63.01%), Query Frame = 0


Query: 6    HLLSLLKSIRILLAAYFDYEIWQMDVKTAFLNGNLKETIYMQQPEGLIIPDQEQKVCKLN 65
            H  +L+ S+ I L    DY I Q+D+ +A+L  ++KE +Y++ P  L + D   K+ +L 
Sbjct: 1339 HHYALMTSLSIALDN--DYYITQLDISSAYLYADIKEELYIRPPPHLGLND---KLLRLR 1398

Query: 66   RSIYGLKQASRSW 79
            +S+YGLKQ+  +W
Sbjct: 1399 KSLYGLKQSGANW 1406

[Close]

BLAST of Cmc08g0227771 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.2e-31
Identity = 71/80 (88.75%), Postives = 76/80 (95.00%), Query Frame = 0


Query: 8   LSLLKSIRILL--AAYFDYEIWQMDVKTAFLNGNLKETIYMQQPEGLIIPDQEQKVCKLN 67
           +++LKSIRILL  AAYFDYEIWQMDVKTAFLNGNL+ETIYMQQPEG IIP QEQK+CKLN
Sbjct: 907 VAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLN 966

Query: 68  RSIYGLKQASRSWNIRFDTA 86
           RSIYGLKQASRSWNIRFDTA
Sbjct: 967 RSIYGLKQASRSWNIRFDTA 986

[Close]

BLAST of Cmc08g0227771 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.2e-31
Identity = 71/80 (88.75%), Postives = 76/80 (95.00%), Query Frame = 0


Query: 8   LSLLKSIRILL--AAYFDYEIWQMDVKTAFLNGNLKETIYMQQPEGLIIPDQEQKVCKLN 67
           +++LKSIRILL  AAYFDYEIWQMDVKTAFLNGNL+ETIYMQQPEG IIP QEQK+CKLN
Sbjct: 907 VAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLN 966

Query: 68  RSIYGLKQASRSWNIRFDTA 86
           RSIYGLKQASRSWNIRFDTA
Sbjct: 967 RSIYGLKQASRSWNIRFDTA 986

[Close]

BLAST of Cmc08g0227771 vs. ExPASy TrEMBL
Match: A0A5A7V4M1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00930 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.2e-31
Identity = 71/80 (88.75%), Postives = 76/80 (95.00%), Query Frame = 0


Query: 8    LSLLKSIRILL--AAYFDYEIWQMDVKTAFLNGNLKETIYMQQPEGLIIPDQEQKVCKLN 67
            +++LKSIRILL  AAYFDYEIWQMDVKTAFLNGNL+ETIYMQQPEG IIP QEQK+CKLN
Sbjct: 1024 VAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLN 1083

Query: 68   RSIYGLKQASRSWNIRFDTA 86
            RSIYGLKQASRSWNIRFDTA
Sbjct: 1084 RSIYGLKQASRSWNIRFDTA 1103

[Close]

BLAST of Cmc08g0227771 vs. ExPASy TrEMBL
Match: A0A5D3DS88 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14G001000 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.2e-31
Identity = 71/80 (88.75%), Postives = 76/80 (95.00%), Query Frame = 0


Query: 8   LSLLKSIRILL--AAYFDYEIWQMDVKTAFLNGNLKETIYMQQPEGLIIPDQEQKVCKLN 67
           +++LKSIRILL  AAYFDYEIWQMDVKTAFLNGNL+ETIYMQQPEG IIP QEQK+CKLN
Sbjct: 907 VAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLN 966

Query: 68  RSIYGLKQASRSWNIRFDTA 86
           RSIYGLKQASRSWNIRFDTA
Sbjct: 967 RSIYGLKQASRSWNIRFDTA 986

[Close]

BLAST of Cmc08g0227771 vs. ExPASy TrEMBL
Match: A0A5A7TWB9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00310 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.2e-31
Identity = 71/80 (88.75%), Postives = 76/80 (95.00%), Query Frame = 0


Query: 8   LSLLKSIRILL--AAYFDYEIWQMDVKTAFLNGNLKETIYMQQPEGLIIPDQEQKVCKLN 67
           +++LKSIRILL  AAYFDYEIWQMDVKTAFLNGNL+ETIYMQQPEG IIP QEQK+CKLN
Sbjct: 907 VAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLN 966

Query: 68  RSIYGLKQASRSWNIRFDTA 86
           RSIYGLKQASRSWNIRFDTA
Sbjct: 967 RSIYGLKQASRSWNIRFDTA 986

[Close]

BLAST of Cmc08g0227771 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 65.9 bits (159), Expect = 1.8e-11
Identity = 34/78 (43.59%), Postives = 50/78 (64.10%), Query Frame = 0


Query: 11  LKSIRILLA--AYFDYEIWQMDVKTAFLNGNLKETIYMQQPEGLIIPDQE----QKVCKL 70
           L S++++LA  A +++ + Q+D+  AFLNG+L E IYM+ P G      +      VC L
Sbjct: 173 LTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYL 232

Query: 71  NRSIYGLKQASRSWNIRF 83
            +SIYGLKQASR W ++F
Sbjct: 233 KKSIYGLKQASRQWFLKF 250

The following BLAST results are available for this feature:

BLAST of Cmc08g0227771 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ97618.1	2.6e-31	88.75	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0048404.1	2.6e-31	88.75	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK14550.1	2.6e-31	88.75	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0054490.1	2.6e-31	88.75	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0061339.1	2.6e-31	88.75	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc08g0227771 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	4.9e-17	55.26	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	4.3e-13	51.95	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	1.8e-11	45.95	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	3.1e-11	48.57	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q12491	8.6e-06	36.99	Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc08g0227771 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SMH8	1.2e-31	88.75	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5D3CPJ6	1.2e-31	88.75	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004...	[more]
A0A5A7V4M1	1.2e-31	88.75	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G0093...	[more]
A0A5D3DS88	1.2e-31	88.75	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14G00100...	[more]
A0A5A7TWB9	1.2e-31	88.75	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G0031...	[more]

BLAST of Cmc08g0227771 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.8e-11	43.59	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 11..83 e-value: 1.1E-23 score: 84.1
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 14..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0227771.1	Cmc08g0227771.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding