Cmc08g0227741 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0227741
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr08: 21059483 .. 21059875 (-)
RNA-Seq Expression	Cmc08g0227741
Synteny	Cmc08g0227741

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAACATTCCCTATGCTTCTACTGTTGGGAGTCTGATATATGCAATGTTATGTACTAGACCTGACATTTGCTATTCGGTGGGGATAGTTAGTAGATATCAGTCCAATCCTGGACATGATCACTGGACAGTCGTTAAGAATATTCTAAAATATCTTAGAAGAACAAAAGACTACATGCTCGTGTATGGTTTTAAGGATCTGATCCTTACTAGATACACTGACTCCGATTTTCAAACTGATAAAGATGCTAGAAAGTCTATATCCGGATCAGTTTTCACTCTGAACAGAGGAGCAGTAGTATGGAGAAGCATAAAACAATCTTGTATTGCCGACTCCACTATGAAAGCTGAATATATAGTTGTCTGTGAAGCAACGAAAGAAGCAATATGA

mRNA sequence

ATGAGTAACATTCCCTATGCTTCTACTGTTGGGAGTCTGATATATGCAATGTTATGTACTAGACCTGACATTTGCTATTCGGTGGGGATAGTTAGTAGATATCAGTCCAATCCTGGACATGATCACTGGACAGTCGTTAAGAATATTCTAAAATATCTTAGAAGAACAAAAGACTACATGCTCGTGTATGGTTTTAAGGATCTGATCCTTACTAGATACACTGACTCCGATTTTCAAACTGATAAAGATGCTAGAAAGTCTATATCCGGATCAGTTTTCACTCTGAACAGAGGAGCAGTAGTATGGAGAAGCATAAAACAATCTTGTATTGCCGACTCCACTATGAAAGCTGAATATATAGTTGTCTGTGAAGCAACGAAAGAAGCAATATGA

Coding sequence (CDS)

ATGAGTAACATTCCCTATGCTTCTACTGTTGGGAGTCTGATATATGCAATGTTATGTACTAGACCTGACATTTGCTATTCGGTGGGGATAGTTAGTAGATATCAGTCCAATCCTGGACATGATCACTGGACAGTCGTTAAGAATATTCTAAAATATCTTAGAAGAACAAAAGACTACATGCTCGTGTATGGTTTTAAGGATCTGATCCTTACTAGATACACTGACTCCGATTTTCAAACTGATAAAGATGCTAGAAAGTCTATATCCGGATCAGTTTTCACTCTGAACAGAGGAGCAGTAGTATGGAGAAGCATAAAACAATCTTGTATTGCCGACTCCACTATGAAAGCTGAATATATAGTTGTCTGTGAAGCAACGAAAGAAGCAATATGA

Protein sequence

MSNIPYASTVGSLIYAMLCTRPDICYSVGIVSRYQSNPGHDHWTVVKNILKYLRRTKDYMLVYGFKDLILTRYTDSDFQTDKDARKSISGSVFTLNRGAVVWRSIKQSCIADSTMKAEYIVVCEATKEAI

Homology

[Close]

BLAST of Cmc08g0227741 vs. NCBI nr
Match: KAA0026227.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK30725.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 234.2 bits (596), Expect = 6.4e-58
Identity = 114/130 (87.69%), Postives = 119/130 (91.54%), Query Frame = 0


Query: 1   MSNIPYASTVGSLIYAMLCTRPDICYSVGIVSRYQSNPGHDHWTVVKNILKYLRRTKDYM 60
           MSNIPYAS VGSL+YAMLCTRPDICYSVGIVSRYQSNPG DHWT VKNILKYLRRTKDYM
Sbjct: 47  MSNIPYASAVGSLMYAMLCTRPDICYSVGIVSRYQSNPGRDHWTAVKNILKYLRRTKDYM 106

Query: 61  LVYGFKDLILTRYTDSDFQTDKDARKSISGSVFTLNRGAVVWRSIKQSCIADSTMKAEYI 120
           LVYG KDLILTRYT+ DFQTDKDARKS SGSVFTLN GAVVWRSIKQS IADSTM+AEY+
Sbjct: 107 LVYGSKDLILTRYTNFDFQTDKDARKSTSGSVFTLNEGAVVWRSIKQSYIADSTMEAEYV 166

Query: 121 VVCEATKEAI 131
             CEA KEA+
Sbjct: 167 AACEAVKEAV 176

[Close]

BLAST of Cmc08g0227741 vs. NCBI nr
Match: TYK06386.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 231.9 bits (590), Expect = 3.2e-57
Identity = 113/130 (86.92%), Postives = 117/130 (90.00%), Query Frame = 0


Query: 1   MSNIPYASTVGSLIYAMLCTRPDICYSVGIVSRYQSNPGHDHWTVVKNILKYLRRTKDYM 60
           MSNIPYA  VGSL+YAMLCTRPDICYSVGIVSRYQSNPG DHWT VKNILKYLRRTKDYM
Sbjct: 151 MSNIPYAYAVGSLMYAMLCTRPDICYSVGIVSRYQSNPGRDHWTDVKNILKYLRRTKDYM 210

Query: 61  LVYGFKDLILTRYTDSDFQTDKDARKSISGSVFTLNRGAVVWRSIKQSCIADSTMKAEYI 120
           LVYG KDLIL  YTDSDFQTDKDARKS SGSVFTLN GAVVWRSIKQSCIADSTM+ EY+
Sbjct: 211 LVYGSKDLILIGYTDSDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEVEYV 270

Query: 121 VVCEATKEAI 131
             CEA KEA+
Sbjct: 271 AACEAAKEAV 280

[Close]

BLAST of Cmc08g0227741 vs. NCBI nr
Match: TYK29682.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 231.5 bits (589), Expect = 4.2e-57
Identity = 113/130 (86.92%), Postives = 117/130 (90.00%), Query Frame = 0


Query: 1   MSNIPYASTVGSLIYAMLCTRPDICYSVGIVSRYQSNPGHDHWTVVKNILKYLRRTKDYM 60
           MSNIPYA  VGSL+YAMLCTRPDICY V IVSRYQSNPG DHWT VKNILKYLRRTKDYM
Sbjct: 489 MSNIPYAFAVGSLMYAMLCTRPDICYLVEIVSRYQSNPGRDHWTAVKNILKYLRRTKDYM 548

Query: 61  LVYGFKDLILTRYTDSDFQTDKDARKSISGSVFTLNRGAVVWRSIKQSCIADSTMKAEYI 120
           LVYG KDLILT YTDSDFQTDKDARKS SGSVFTLN GAVVWRSIKQSCIADSTM+AEY+
Sbjct: 549 LVYGSKDLILTGYTDSDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEAEYV 608

Query: 121 VVCEATKEAI 131
             CEA KEA+
Sbjct: 609 AACEAAKEAV 618

[Close]

BLAST of Cmc08g0227741 vs. NCBI nr
Match: KAA0063026.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 231.1 bits (588), Expect = 5.4e-57
Identity = 110/130 (84.62%), Postives = 118/130 (90.77%), Query Frame = 0


Query: 1   MSNIPYASTVGSLIYAMLCTRPDICYSVGIVSRYQSNPGHDHWTVVKNILKYLRRTKDYM 60
           +SNIPYASTV SL+YAMLCTRPDICYS+GI+SRYQSNPG DHWT VKNILKYLRRTKDYM
Sbjct: 571 ISNIPYASTVRSLMYAMLCTRPDICYSIGIISRYQSNPGRDHWTTVKNILKYLRRTKDYM 630

Query: 61  LVYGFKDLILTRYTDSDFQTDKDARKSISGSVFTLNRGAVVWRSIKQSCIADSTMKAEYI 120
           LVYG KDLILT YTDSDFQTDKD RKS SGSVFTLN G VVWRSIKQSCIA+STM+AEY+
Sbjct: 631 LVYGSKDLILTGYTDSDFQTDKDGRKSTSGSVFTLNGGGVVWRSIKQSCIAESTMEAEYV 690

Query: 121 VVCEATKEAI 131
             CEA KEA+
Sbjct: 691 AACEAAKEAV 700

[Close]

BLAST of Cmc08g0227741 vs. NCBI nr
Match: KAA0032993.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK21973.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 230.3 bits (586), Expect = 9.3e-57
Identity = 112/130 (86.15%), Postives = 117/130 (90.00%), Query Frame = 0


Query: 1   MSNIPYASTVGSLIYAMLCTRPDICYSVGIVSRYQSNPGHDHWTVVKNILKYLRRTKDYM 60
           MSNIPYA  VGSL+YAMLCTRPDICYSVGIVSRYQSNPGHDHWT VKNILKYLRRTK YM
Sbjct: 568 MSNIPYAFAVGSLMYAMLCTRPDICYSVGIVSRYQSNPGHDHWTAVKNILKYLRRTKCYM 627

Query: 61  LVYGFKDLILTRYTDSDFQTDKDARKSISGSVFTLNRGAVVWRSIKQSCIADSTMKAEYI 120
           L+YG KDLI+T YTDSDFQTDKD RKS SGSVFTLN GAVVWRSIKQSCI DSTM+AEYI
Sbjct: 628 LMYGSKDLIITGYTDSDFQTDKDHRKSTSGSVFTLNGGAVVWRSIKQSCIVDSTMEAEYI 687

Query: 121 VVCEATKEAI 131
             CEA KEA+
Sbjct: 688 ASCEAAKEAV 697

[Close]

BLAST of Cmc08g0227741 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 3.7e-32
Identity = 69/130 (53.08%), Postives = 89/130 (68.46%), Query Frame = 0


Query: 1    MSNIPYASTVGSLIYAMLCTRPDICYSVGIVSRYQSNPGHDHWTVVKNILKYLRRTKDYM 60
            M+ +PY+S VGSL+YAM+CTRPDI ++VG+VSR+  NPG +HW  VK IL+YLR T    
Sbjct: 1106 MAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDC 1165

Query: 61   LVYGFKDLILTRYTDSDFQTDKDARKSISGSVFTLNRGAVVWRSIKQSCIADSTMKAEYI 120
            L +G  D IL  YTD+D   D D RKS +G +FT + GA+ W+S  Q C+A ST +AEYI
Sbjct: 1166 LCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYI 1225

Query: 121  VVCEATKEAI 131
               E  KE I
Sbjct: 1226 AATETGKEMI 1235

[Close]

BLAST of Cmc08g0227741 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 4.8e-24
Identity = 55/131 (41.98%), Postives = 87/131 (66.41%), Query Frame = 0


Query: 1   MSNIPYASTVGSLIYAMLCTRPDICYSVGIVSRYQSNPGHDHWTVVKNILKYLRRTKDYM 60
           M N+PY S VG+++Y M+ TRPD+  +VG++S++ S+P   HW  +K +L+YL+ T+ Y 
Sbjct: 1   MKNVPYLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYG 60

Query: 61  LVYGFKDLI-LTRYTDSDFQTDKDARKSISGSVFTLNRGAVVWRSIKQSCIADSTMKAEY 120
           L +       L  Y+D+D+  D ++R+S SG +F LN G V WRS KQ  +A S+ + EY
Sbjct: 61  LEFTRAGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEY 120

Query: 121 IVVCEATKEAI 131
           + + EAT+EA+
Sbjct: 121 MALSEATQEAV 131

[Close]

BLAST of Cmc08g0227741 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 89.4 bits (220), Expect = 3.4e-17
Identity = 49/133 (36.84%), Postives = 81/133 (60.90%), Query Frame = 0


Query: 3    NIPYASTVGSLIYAMLCTRPDICYSVGIVSRYQSNPGHDHWTVVKNILKYLRRTKDYMLV 62
            N P  S +G L+Y MLCTRPD+  +V I+SRY S    + W  +K +L+YL+ T D  L+
Sbjct: 1178 NTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLI 1237

Query: 63   Y----GFKDLILTRYTDSDFQTDKDARKSISGSVFTL-NRGAVVWRSIKQSCIADSTMKA 122
            +     F++ I+  Y DSD+   +  RKS +G +F + +   + W + +Q+ +A S+ +A
Sbjct: 1238 FKKNLAFENKII-GYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEA 1297

Query: 123  EYIVVCEATKEAI 131
            EY+ + EA +EA+
Sbjct: 1298 EYMALFEAVREAL 1309

[Close]

BLAST of Cmc08g0227741 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 8.5e-13
Identity = 44/124 (35.48%), Postives = 65/124 (52.42%), Query Frame = 0


Query: 6    YASTVGSLIYAMLCTRPDICYSVGIVSRYQSNPGHDHWTVVKNILKYLRRTKDY-MLVYG 65
            Y   VGSL Y +  TRPD+ Y+V  +S+Y   P  DHW  +K +L+YL  T D+ + +  
Sbjct: 1228 YRGIVGSLQY-LAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKK 1287

Query: 66   FKDLILTRYTDSDFQTDKDARKSISGSVFTLNRGAVVWRSIKQSCIADSTMKAEYIVVCE 125
               L L  Y+D+D+  D D   S +G +  L    + W S KQ  +  S+ +AEY  V  
Sbjct: 1288 GNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVAN 1347

Query: 126  ATKE 129
             + E
Sbjct: 1348 TSSE 1350

[Close]

BLAST of Cmc08g0227741 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 8.0e-11
Identity = 43/124 (34.68%), Postives = 65/124 (52.42%), Query Frame = 0


Query: 6    YASTVGSLIYAMLCTRPDICYSVGIVSRYQSNPGHDHWTVVKNILKYLRRTKDY-MLVYG 65
            Y   VGSL Y +  TRPDI Y+V  +S++   P  +H   +K IL+YL  T ++ + +  
Sbjct: 1245 YRGIVGSLQY-LAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKK 1304

Query: 66   FKDLILTRYTDSDFQTDKDARKSISGSVFTLNRGAVVWRSIKQSCIADSTMKAEYIVVCE 125
               L L  Y+D+D+  DKD   S +G +  L    + W S KQ  +  S+ +AEY  V  
Sbjct: 1305 GNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVAN 1364

Query: 126  ATKE 129
             + E
Sbjct: 1365 TSSE 1367

[Close]

BLAST of Cmc08g0227741 vs. ExPASy TrEMBL
Match: A0A5A7SNE2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold343G00570 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 3.1e-58
Identity = 114/130 (87.69%), Postives = 119/130 (91.54%), Query Frame = 0


Query: 1   MSNIPYASTVGSLIYAMLCTRPDICYSVGIVSRYQSNPGHDHWTVVKNILKYLRRTKDYM 60
           MSNIPYAS VGSL+YAMLCTRPDICYSVGIVSRYQSNPG DHWT VKNILKYLRRTKDYM
Sbjct: 47  MSNIPYASAVGSLMYAMLCTRPDICYSVGIVSRYQSNPGRDHWTAVKNILKYLRRTKDYM 106

Query: 61  LVYGFKDLILTRYTDSDFQTDKDARKSISGSVFTLNRGAVVWRSIKQSCIADSTMKAEYI 120
           LVYG KDLILTRYT+ DFQTDKDARKS SGSVFTLN GAVVWRSIKQS IADSTM+AEY+
Sbjct: 107 LVYGSKDLILTRYTNFDFQTDKDARKSTSGSVFTLNEGAVVWRSIKQSYIADSTMEAEYV 166

Query: 121 VVCEATKEAI 131
             CEA KEA+
Sbjct: 167 AACEAVKEAV 176

[Close]

BLAST of Cmc08g0227741 vs. ExPASy TrEMBL
Match: A0A5D3C7T2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G00810 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.5e-57
Identity = 113/130 (86.92%), Postives = 117/130 (90.00%), Query Frame = 0


Query: 1   MSNIPYASTVGSLIYAMLCTRPDICYSVGIVSRYQSNPGHDHWTVVKNILKYLRRTKDYM 60
           MSNIPYA  VGSL+YAMLCTRPDICYSVGIVSRYQSNPG DHWT VKNILKYLRRTKDYM
Sbjct: 151 MSNIPYAYAVGSLMYAMLCTRPDICYSVGIVSRYQSNPGRDHWTDVKNILKYLRRTKDYM 210

Query: 61  LVYGFKDLILTRYTDSDFQTDKDARKSISGSVFTLNRGAVVWRSIKQSCIADSTMKAEYI 120
           LVYG KDLIL  YTDSDFQTDKDARKS SGSVFTLN GAVVWRSIKQSCIADSTM+ EY+
Sbjct: 211 LVYGSKDLILIGYTDSDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEVEYV 270

Query: 121 VVCEATKEAI 131
             CEA KEA+
Sbjct: 271 AACEAAKEAV 280

[Close]

BLAST of Cmc08g0227741 vs. ExPASy TrEMBL
Match: A0A5D3E173 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold64G00320 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 2.0e-57
Identity = 113/130 (86.92%), Postives = 117/130 (90.00%), Query Frame = 0


Query: 1   MSNIPYASTVGSLIYAMLCTRPDICYSVGIVSRYQSNPGHDHWTVVKNILKYLRRTKDYM 60
           MSNIPYA  VGSL+YAMLCTRPDICY V IVSRYQSNPG DHWT VKNILKYLRRTKDYM
Sbjct: 489 MSNIPYAFAVGSLMYAMLCTRPDICYLVEIVSRYQSNPGRDHWTAVKNILKYLRRTKDYM 548

Query: 61  LVYGFKDLILTRYTDSDFQTDKDARKSISGSVFTLNRGAVVWRSIKQSCIADSTMKAEYI 120
           LVYG KDLILT YTDSDFQTDKDARKS SGSVFTLN GAVVWRSIKQSCIADSTM+AEY+
Sbjct: 549 LVYGSKDLILTGYTDSDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEAEYV 608

Query: 121 VVCEATKEAI 131
             CEA KEA+
Sbjct: 609 AACEAAKEAV 618

[Close]

BLAST of Cmc08g0227741 vs. ExPASy TrEMBL
Match: A0A5A7V9B0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G001330 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 2.6e-57
Identity = 110/130 (84.62%), Postives = 118/130 (90.77%), Query Frame = 0


Query: 1   MSNIPYASTVGSLIYAMLCTRPDICYSVGIVSRYQSNPGHDHWTVVKNILKYLRRTKDYM 60
           +SNIPYASTV SL+YAMLCTRPDICYS+GI+SRYQSNPG DHWT VKNILKYLRRTKDYM
Sbjct: 571 ISNIPYASTVRSLMYAMLCTRPDICYSIGIISRYQSNPGRDHWTTVKNILKYLRRTKDYM 630

Query: 61  LVYGFKDLILTRYTDSDFQTDKDARKSISGSVFTLNRGAVVWRSIKQSCIADSTMKAEYI 120
           LVYG KDLILT YTDSDFQTDKD RKS SGSVFTLN G VVWRSIKQSCIA+STM+AEY+
Sbjct: 631 LVYGSKDLILTGYTDSDFQTDKDGRKSTSGSVFTLNGGGVVWRSIKQSCIAESTMEAEYV 690

Query: 121 VVCEATKEAI 131
             CEA KEA+
Sbjct: 691 AACEAAKEAV 700

[Close]

BLAST of Cmc08g0227741 vs. ExPASy TrEMBL
Match: A0A5D3DEL0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold482G00020 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 4.5e-57
Identity = 112/130 (86.15%), Postives = 117/130 (90.00%), Query Frame = 0


Query: 1   MSNIPYASTVGSLIYAMLCTRPDICYSVGIVSRYQSNPGHDHWTVVKNILKYLRRTKDYM 60
           MSNIPYA  VGSL+YAMLCTRPDICYSVGIVSRYQSNPGHDHWT VKNILKYLRRTK YM
Sbjct: 568 MSNIPYAFAVGSLMYAMLCTRPDICYSVGIVSRYQSNPGHDHWTAVKNILKYLRRTKCYM 627

Query: 61  LVYGFKDLILTRYTDSDFQTDKDARKSISGSVFTLNRGAVVWRSIKQSCIADSTMKAEYI 120
           L+YG KDLI+T YTDSDFQTDKD RKS SGSVFTLN GAVVWRSIKQSCI DSTM+AEYI
Sbjct: 628 LMYGSKDLIITGYTDSDFQTDKDHRKSTSGSVFTLNGGAVVWRSIKQSCIVDSTMEAEYI 687

Query: 121 VVCEATKEAI 131
             CEA KEA+
Sbjct: 688 ASCEAAKEAV 697

[Close]

BLAST of Cmc08g0227741 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 65.9 bits (159), Expect = 2.8e-11
Identity = 40/124 (32.26%), Postives = 66/124 (53.23%), Query Frame = 0


Query: 6   YASTVGSLIYAMLCTRPDICYSVGIVSRYQSNPGHDHWTVVKNILKYLRRTKDYMLVYGF 65
           Y   +G L+Y  + TR DI ++V  +S++   P   H   V  IL Y++ T    L Y  
Sbjct: 378 YRRLIGRLMYLQI-TRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSS 437

Query: 66  K-DLILTRYTDSDFQTDKDARKSISGSVFTLNRGAVVWRSIKQSCIADSTMKAEYIVVCE 125
           + ++ L  ++D+ FQ+ KD R+S +G    L    + W+S KQ  ++ S+ +AEY  +  
Sbjct: 438 QAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSF 497

Query: 126 ATKE 129
           AT E
Sbjct: 498 ATDE 500

The following BLAST results are available for this feature:

BLAST of Cmc08g0227741 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0026227.1	6.4e-58	87.69	gag/pol protein [Cucumis melo var. makuwa] >TYK30725.1 gag/pol protein [Cucumis ...	[more]
TYK06386.1	3.2e-57	86.92	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK29682.1	4.2e-57	86.92	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0063026.1	5.4e-57	84.62	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0032993.1	9.3e-57	86.15	gag/pol protein [Cucumis melo var. makuwa] >TYK21973.1 gag/pol protein [Cucumis ...	[more]

BLAST of Cmc08g0227741 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	3.7e-32	53.08	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P0CV72	4.8e-24	41.98	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
P04146	3.4e-17	36.84	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	8.5e-13	35.48	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	8.0e-11	34.68	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

BLAST of Cmc08g0227741 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SNE2	3.1e-58	87.69	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold343G0057...	[more]
A0A5D3C7T2	1.5e-57	86.92	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G0081...	[more]
A0A5D3E173	2.0e-57	86.92	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold64G00320...	[more]
A0A5A7V9B0	2.6e-57	84.62	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G0013...	[more]
A0A5D3DEL0	4.5e-57	86.15	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold482G0002...	[more]

BLAST of Cmc08g0227741 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	2.8e-11	32.26	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 13..92
None	No IPR available	PANTHER	PTHR11439:SF308	SUBFAMILY NOT NAMED	coord: 13..92
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 73..130 e-value: 5.41366E-25 score: 90.6053

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0227741.1	Cmc08g0227741.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding