Cmc08g0227691 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0227691
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrotransposon protein
Location	CMiso1.1chr08: 20984061 .. 20985148 (+)
RNA-Seq Expression	Cmc08g0227691
Synteny	Cmc08g0227691

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTAGGATCAAGTTAATTGGAGAATTTTACTGTCAACTAGGGAGTACCTTTGTTTGGCTAAAATCTCCAGGTAAGAGATTCTCCTACTAGACCTTCGAATTGAATTCAAGAGACCGCATGTAATTATGATTATGCATTGATGGTAGCTAAAATGCATAACTTGATGCTACTGATAATGACAGTCATTGTATTGATGTTGATGATGATGACTGAGATTATTATGTTGATGATTGATGATGATGACTGATGTTATGTTAATGACTGGAGATTGATGTTGATGATTGTTAATGCATGATATATTAATCACATGATTAAGGACGTTAAGATTAATATTCATGTCATGTTATGATGTTATGTTATGCTACATGCTATGGATAGGGTGTTCTGTTAACTTTGTCTATTAGAGTCGTACCTGCATGGGTGTCCTTCGGGATCACCACCTATTTAGGACTGTGTGGTCCGACGGGACGCCAGTCTAGCATGGATATAGATATGATTCGAGTGATTCGACGGGGTCCTCGCATCCCGATTGTCTTAGTGTTACCCCCGGGTTCACTATAGACCAGCATGTCCTAGGTGCTCCCTCGGGACACCGAAGACCAGATTTTCGTTCCTACGGGAGCGCATGTTGCACGTGTTCGGGAACGTGCCAGAGATTGGGTACCATTTTCAGGACTCTAATGGGAAGTTAACAGACACCTAGCGGGACTAGTAGTAGGTCCCTTACTGAGTATATGTTTATACTCACTCTTTCTATGTTTAACATTTCAGGCGAAGGTAAAGGTAGAGGAAAGCTGGCGAGCGACAGAGAAGGATCCGTGACATGCCATATGGGGACTCAGTTTTGCTTCCGCGTTAATGTTTCAGTGTTTTAATATTCCGTTTTTAATGAAAATTTATTCTTCCCTCGTTTCAAAAAGTGTCTCTTGTCATTGTTTTCTTTTAGTAACGACCTCAGCTTAGTATAAAGAGTTGGGTCGTTACACTTATGCATGACATTGACATATATTTGGATAGTTGTGCCCAAAATGTTGCAAGCAAGTCATCTTAAATTCTTGGTTATAAGAGTCTTATTGTTATACTTG

mRNA sequence

ATGATTAGGATCAAGTTAATTGGAGAATTTTACTGTCAACTAGGGAGTACCTTTGTTTGGCTAAAATCTCCAGGCGAAGGTAAAGGTAGAGGAAAGCTGGCGAGCGACAGAGAAGGATCCGTGACATGCCATATGGGGACTCAGTTTTGCTTCCGCGTTAATGTTTCAGTGTTTTAATATTCCGTTTTTAATGAAAATTTATTCTTCCCTCGTTTCAAAAAGTGTCTCTTGTCATTGTTTTCTTTTAGTAACGACCTCAGCTTAGTATAAAGAGTTGGGTCGTTACACTTATGCATGACATTGACATATATTTGGATAGTTGTGCCCAAAATGTTGCAAGCAAGTCATCTTAAATTCTTGGTTATAAGAGTCTTATTGTTATACTTG

Coding sequence (CDS)

ATGATTAGGATCAAGTTAATTGGAGAATTTTACTGTCAACTAGGGAGTACCTTTGTTTGGCTAAAATCTCCAGGCGAAGGTAAAGGTAGAGGAAAGCTGGCGAGCGACAGAGAAGGATCCGTGACATGCCATATGGGGACTCAGTTTTGCTTCCGCGTTAATGTTTCAGTGTTTTAA

Protein sequence

MIRIKLIGEFYCQLGSTFVWLKSPGEGKGRGKLASDREGSVTCHMGTQFCFRVNVSVF

Homology

[Close]

BLAST of Cmc08g0227691 vs. NCBI nr
Match: KAA0045385.1 (hypothetical protein E6C27_scaffold442G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 3.8e-10
Identity = 34/43 (79.07%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 16 STFVWLKSPGEGKGRGKLASDREGSVTCHMGTQFCFRVNVSVF 59
          S  V +  PGEGKGRGKLASD+EGSVTCHMGTQFCFRV V+VF
Sbjct: 15 SLIVLVFPPGEGKGRGKLASDKEGSVTCHMGTQFCFRVYVAVF 57

[Close]

BLAST of Cmc08g0227691 vs. NCBI nr
Match: KAA0047884.1 (uncharacterized protein E6C27_scaffold133G001580 [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 6.5e-10
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 0


Query: 26  EGKGRGKLASDREGSVTCHMGTQFCFRVNVSVF 59
           EGKGRGKLASDREGSVTCHMGTQFCFRVNVSVF
Sbjct: 104 EGKGRGKLASDREGSVTCHMGTQFCFRVNVSVF 136

[Close]

BLAST of Cmc08g0227691 vs. NCBI nr
Match: KAA0063966.1 (hypothetical protein E6C27_scaffold616G001210 [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 1.4e-09
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 0


Query: 25 GEGKGRGKLASDREGSVTCHMGTQFCFRVNVSVF 59
          GEGKGRGKLASDREGSVTCHMGTQFCFRV VSVF
Sbjct: 24 GEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 57

[Close]

BLAST of Cmc08g0227691 vs. NCBI nr
Match: TYJ98810.1 (hypothetical protein E5676_scaffold703G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 1.4e-09
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 0


Query: 25 GEGKGRGKLASDREGSVTCHMGTQFCFRVNVSVF 59
          GEGKGRGKLASDREGSVTCHMGTQFCFRV VSVF
Sbjct: 28 GEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 61

[Close]

BLAST of Cmc08g0227691 vs. NCBI nr
Match: KAA0032396.1 (hypothetical protein E6C27_scaffold219G002730 [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 1.4e-09
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 0


Query: 25 GEGKGRGKLASDREGSVTCHMGTQFCFRVNVSVF 59
          GEGKGRGKLASDREGSVTCHMGTQFCFRV VSVF
Sbjct: 29 GEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 62

[Close]

BLAST of Cmc08g0227691 vs. ExPASy TrEMBL
Match: A0A5A7TVG7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold442G00010 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.8e-10
Identity = 34/43 (79.07%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 16 STFVWLKSPGEGKGRGKLASDREGSVTCHMGTQFCFRVNVSVF 59
          S  V +  PGEGKGRGKLASD+EGSVTCHMGTQFCFRV V+VF
Sbjct: 15 SLIVLVFPPGEGKGRGKLASDKEGSVTCHMGTQFCFRVYVAVF 57

[Close]

BLAST of Cmc08g0227691 vs. ExPASy TrEMBL
Match: A0A5A7TXZ3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G001580 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.1e-10
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 0


Query: 26  EGKGRGKLASDREGSVTCHMGTQFCFRVNVSVF 59
           EGKGRGKLASDREGSVTCHMGTQFCFRVNVSVF
Sbjct: 104 EGKGRGKLASDREGSVTCHMGTQFCFRVNVSVF 136

[Close]

BLAST of Cmc08g0227691 vs. ExPASy TrEMBL
Match: A0A5A7VJ46 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1567G00510 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 7.0e-10
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 0


Query: 25 GEGKGRGKLASDREGSVTCHMGTQFCFRVNVSVF 59
          GEGKGRGKLASDREGSVTCHMGTQFCFRV VSVF
Sbjct: 61 GEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 94

[Close]

BLAST of Cmc08g0227691 vs. ExPASy TrEMBL
Match: A0A5D3BG96 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold703G00090 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 7.0e-10
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 0


Query: 25 GEGKGRGKLASDREGSVTCHMGTQFCFRVNVSVF 59
          GEGKGRGKLASDREGSVTCHMGTQFCFRV VSVF
Sbjct: 28 GEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 61

[Close]

BLAST of Cmc08g0227691 vs. ExPASy TrEMBL
Match: A0A5D3CKK9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold304G00060 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 7.0e-10
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 0


Query: 25  GEGKGRGKLASDREGSVTCHMGTQFCFRVNVSVF 59
           GEGKGRGKLASDREGSVTCHMGTQFCFRV VSVF
Sbjct: 132 GEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 165

The following BLAST results are available for this feature:

BLAST of Cmc08g0227691 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0045385.1	3.8e-10	79.07	hypothetical protein E6C27_scaffold442G00010 [Cucumis melo var. makuwa]	[more]
KAA0047884.1	6.5e-10	100.00	uncharacterized protein E6C27_scaffold133G001580 [Cucumis melo var. makuwa]	[more]
KAA0063966.1	1.4e-09	97.06	hypothetical protein E6C27_scaffold616G001210 [Cucumis melo var. makuwa]	[more]
TYJ98810.1	1.4e-09	97.06	hypothetical protein E5676_scaffold703G00090 [Cucumis melo var. makuwa]	[more]
KAA0032396.1	1.4e-09	97.06	hypothetical protein E6C27_scaffold219G002730 [Cucumis melo var. makuwa]	[more]

BLAST of Cmc08g0227691 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc08g0227691 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TVG7	1.8e-10	79.07	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TXZ3	3.1e-10	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7VJ46	7.0e-10	97.06	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BG96	7.0e-10	97.06	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CKK9	7.0e-10	97.06	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Cmc08g0227691 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0227691.1	Cmc08g0227691.1	mRNA