Cmc08g0227681 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0227681
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr08: 20977434 .. 20978072 (+)
RNA-Seq Expression	Cmc08g0227681
Synteny	Cmc08g0227681

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACCTCGAAATGGAGTCTATATATTTCAATTCTGCCTGGACTTTAATAGATCAACCAAATGATGTAAAACCTTTTAGTTGTAAATGGATTTACAAAAGAAAACGAGACAAAGTAGGTAATGTACAGACTTTTAAGGCTCGACTTGTGGCAAAAGGTTATACCCAAAGAGAGGGAGTGGACTATGAAGAAACTTTCTCTCCCGTTGCCATGCTAAAGTCAATTAGAATACTCTTATCCATCACCACTTTTTATGATTATGAAATTTGGCAGAAGGATGTCAAGACAGCTTTTCTGAATGCAAATTTTGAAGAGAGCATCTATATGGCTCAACCAGAGGGGTTTATAGAAAAGGGTCAAGAACAAAAGGTTTGTAAGCTTCAAAAATCCATTTATGGTTTAAAGAAAGCATGTAGATCCTCGAATATAAGATTTGATACTACGATCAAGTCTTATGACTTTGAACAAAATGTTGACAAACATTGTGTTCACAAAAAGGTCGTCAATTCCATTGTAGCATTCTTAGTATTATATGTAGATGATATTCTACTCATTGGGAATGATGTAGGTTATCTTACTGATATCAAGAAATGGCTAACTACACAATTTCAAATGAAAGATTTGAGAGATGCACAATAG

mRNA sequence

ATGGACCTCGAAATGGAGTCTATATATTTCAATTCTGCCTGGACTTTAATAGATCAACCAAATGATGTAAAACCTTTTAGTTGTAAATGGATTTACAAAAGAAAACGAGACAAAGTAGGTAATGTACAGACTTTTAAGGCTCGACTTGTGGCAAAAGGTTATACCCAAAGAGAGGGAGTGGACTATGAAGAAACTTTCTCTCCCGTTGCCATGCTAAAGTCAATTAGAATACTCTTATCCATCACCACTTTTTATGATTATGAAATTTGGCAGAAGGATGTCAAGACAGCTTTTCTGAATGCAAATTTTGAAGAGAGCATCTATATGGCTCAACCAGAGGGGTTTATAGAAAAGGGTCAAGAACAAAAGGTTTGTAAGCTTCAAAAATCCATTTATGGTTTAAAGAAAGCATGTAGATCCTCGAATATAAGATTTGATACTACGATCAAGTCTTATGACTTTGAACAAAATGTTGACAAACATTGTGTTCACAAAAAGGTCGTCAATTCCATTGTAGCATTCTTAGTATTATATGTAGATGATATTCTACTCATTGGGAATGATGTAGGTTATCTTACTGATATCAAGAAATGGCTAACTACACAATTTCAAATGAAAGATTTGAGAGATGCACAATAG

Coding sequence (CDS)

ATGGACCTCGAAATGGAGTCTATATATTTCAATTCTGCCTGGACTTTAATAGATCAACCAAATGATGTAAAACCTTTTAGTTGTAAATGGATTTACAAAAGAAAACGAGACAAAGTAGGTAATGTACAGACTTTTAAGGCTCGACTTGTGGCAAAAGGTTATACCCAAAGAGAGGGAGTGGACTATGAAGAAACTTTCTCTCCCGTTGCCATGCTAAAGTCAATTAGAATACTCTTATCCATCACCACTTTTTATGATTATGAAATTTGGCAGAAGGATGTCAAGACAGCTTTTCTGAATGCAAATTTTGAAGAGAGCATCTATATGGCTCAACCAGAGGGGTTTATAGAAAAGGGTCAAGAACAAAAGGTTTGTAAGCTTCAAAAATCCATTTATGGTTTAAAGAAAGCATGTAGATCCTCGAATATAAGATTTGATACTACGATCAAGTCTTATGACTTTGAACAAAATGTTGACAAACATTGTGTTCACAAAAAGGTCGTCAATTCCATTGTAGCATTCTTAGTATTATATGTAGATGATATTCTACTCATTGGGAATGATGTAGGTTATCTTACTGATATCAAGAAATGGCTAACTACACAATTTCAAATGAAAGATTTGAGAGATGCACAATAG

Protein sequence

MDLEMESIYFNSAWTLIDQPNDVKPFSCKWIYKRKRDKVGNVQTFKARLVAKGYTQREGVDYEETFSPVAMLKSIRILLSITTFYDYEIWQKDVKTAFLNANFEESIYMAQPEGFIEKGQEQKVCKLQKSIYGLKKACRSSNIRFDTTIKSYDFEQNVDKHCVHKKVVNSIVAFLVLYVDDILLIGNDVGYLTDIKKWLTTQFQMKDLRDAQ

Homology

[Close]

BLAST of Cmc08g0227681 vs. NCBI nr
Match: ADJ18449.1 (gag/pol protein, partial [Bryonia dioica])

HSP 1 Score: 363.2 bits (931), Expect = 1.5e-96
Identity = 175/212 (82.55%), Postives = 191/212 (90.09%), Query Frame = 0


Query: 1    MDLEMESIYFNSAWTLIDQPNDVKPFSCKWIYKRKRDKVGNVQTFKARLVAKGYTQREGV 60
            M+LEMES+YFNS WTL+D P+DVKP  CKWIYKRKRD+ G VQTFKARLVAKGYTQ+EGV
Sbjct: 824  MNLEMESMYFNSVWTLVDLPSDVKPIGCKWIYKRKRDQAGKVQTFKARLVAKGYTQKEGV 883

Query: 61   DYEETFSPVAMLKSIRILLSITTFYDYEIWQKDVKTAFLNANFEESIYMAQPEGFIEKGQ 120
            DYEETFSPVAMLKSIRILLSI TFY+YEIWQ DVKTAFLN N EESIYM QPEGFI + Q
Sbjct: 884  DYEETFSPVAMLKSIRILLSIATFYNYEIWQMDVKTAFLNGNLEESIYMVQPEGFIAQDQ 943

Query: 121  EQKVCKLQKSIYGLKKACRSSNIRFDTTIKSYDFEQNVDKHCVHKKVVNSIVAFLVLYVD 180
            EQKVCKLQKSIYGLK+A RS NIRFDT IKSY FEQNVD+ CV+KK+VNS+VAFL+LYVD
Sbjct: 944  EQKVCKLQKSIYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKKIVNSVVAFLILYVD 1003

Query: 181  DILLIGNDVGYLTDIKKWLTTQFQMKDLRDAQ 213
            DILLIGNDV YLTD+KKWL TQFQMKDL +AQ
Sbjct: 1004 DILLIGNDVEYLTDVKKWLNTQFQMKDLGEAQ 1035

[Close]

BLAST of Cmc08g0227681 vs. NCBI nr
Match: KAA0045356.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 355.1 bits (910), Expect = 4.1e-94
Identity = 168/212 (79.25%), Postives = 190/212 (89.62%), Query Frame = 0


Query: 1   MDLEMESIYFNSAWTLIDQPNDVKPFSCKWIYKRKRDKVGNVQTFKARLVAKGYTQREGV 60
           MDL+MES+Y NS WTL+DQPN+++P  CKWIYKRKRD+   VQTF+ARLVAKGYTQ+EG+
Sbjct: 154 MDLKMESMYSNSVWTLVDQPNNIRPIGCKWIYKRKRDQTAKVQTFRARLVAKGYTQKEGI 213

Query: 61  DYEETFSPVAMLKSIRILLSITTFYDYEIWQKDVKTAFLNANFEESIYMAQPEGFIEKGQ 120
           DYEETFSP+AM+KSIRILLSI TFYDYEIWQ DVKTAFLN N EESIYM QPEGFI+KGQ
Sbjct: 214 DYEETFSPIAMIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMVQPEGFIQKGQ 273

Query: 121 EQKVCKLQKSIYGLKKACRSSNIRFDTTIKSYDFEQNVDKHCVHKKVVNSIVAFLVLYVD 180
           EQKVCKLQKSIYGLK+A RS NIRFDT IKSY FEQNVD+ CV+K+++NS VAFLVLYVD
Sbjct: 274 EQKVCKLQKSIYGLKQASRSWNIRFDTGIKSYGFEQNVDEPCVYKRIINSTVAFLVLYVD 333

Query: 181 DILLIGNDVGYLTDIKKWLTTQFQMKDLRDAQ 213
           DILLIGN+V +LTDIK+WL TQFQMKDL  AQ
Sbjct: 334 DILLIGNEVDHLTDIKEWLDTQFQMKDLGSAQ 365

[Close]

BLAST of Cmc08g0227681 vs. NCBI nr
Match: TYK15984.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 350.1 bits (897), Expect = 1.3e-92
Identity = 170/212 (80.19%), Postives = 183/212 (86.32%), Query Frame = 0


Query: 1   MDLEMESIYFNSAWTLIDQPNDVKPFSCKWIYKRKRDKVGNVQTFKARLVAKGYTQREGV 60
           MDLEMES+YFNS W L+D P  VKP  CKWIYKRKRD  G VQTFKARLVAKGYTQREGV
Sbjct: 342 MDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGV 401

Query: 61  DYEETFSPVAMLKSIRILLSITTFYDYEIWQKDVKTAFLNANFEESIYMAQPEGFIEKGQ 120
           DYEETFSPVAMLKSIRILLSI TFYDYEIWQ DVKTAFLN N EESI+M+QPEGFI +GQ
Sbjct: 402 DYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQ 461

Query: 121 EQKVCKLQKSIYGLKKACRSSNIRFDTTIKSYDFEQNVDKHCVHKKVVNSIVAFLVLYVD 180
           EQKVCKL +SIYGLK+A RS NIRFDT IKSY F+QNVD+ CV+KK+    VAFLVLYVD
Sbjct: 462 EQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVD 521

Query: 181 DILLIGNDVGYLTDIKKWLTTQFQMKDLRDAQ 213
           DILLIGNDVGYLTD+K WL  QFQMKDL +AQ
Sbjct: 522 DILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQ 553

[Close]

BLAST of Cmc08g0227681 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 350.1 bits (897), Expect = 1.3e-92
Identity = 170/212 (80.19%), Postives = 183/212 (86.32%), Query Frame = 0


Query: 1   MDLEMESIYFNSAWTLIDQPNDVKPFSCKWIYKRKRDKVGNVQTFKARLVAKGYTQREGV 60
           MDLEMES+YFNS W L+D P  VKP  CKWIYKRKRD  G VQTFKARLVAKGYTQREGV
Sbjct: 732 MDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGV 791

Query: 61  DYEETFSPVAMLKSIRILLSITTFYDYEIWQKDVKTAFLNANFEESIYMAQPEGFIEKGQ 120
           DYEETFSPVAMLKSIRILLSI TFYDYEIWQ DVKTAFLN N EESI+M+QPEGFI +GQ
Sbjct: 792 DYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQ 851

Query: 121 EQKVCKLQKSIYGLKKACRSSNIRFDTTIKSYDFEQNVDKHCVHKKVVNSIVAFLVLYVD 180
           EQKVCKL +SIYGLK+A RS NIRFDT IKSY F+QNVD+ CV+KK+    VAFLVLYVD
Sbjct: 852 EQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVD 911

Query: 181 DILLIGNDVGYLTDIKKWLTTQFQMKDLRDAQ 213
           DILLIGNDVGYLTD+K WL  QFQMKDL +AQ
Sbjct: 912 DILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQ 943

[Close]

BLAST of Cmc08g0227681 vs. NCBI nr
Match: TYK03644.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 350.1 bits (897), Expect = 1.3e-92
Identity = 170/212 (80.19%), Postives = 186/212 (87.74%), Query Frame = 0


Query: 1   MDLEMESIYFNSAWTLIDQPNDVKPFSCKWIYKRKRDKVGNVQTFKARLVAKGYTQREGV 60
           MDLEMES+Y NS WTL+DQPNDVKP  CKWIYKRKRD+ G VQTFKARLVAKGYTQ+EG+
Sbjct: 249 MDLEMESMYSNSVWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKARLVAKGYTQKEGI 308

Query: 61  DYEETFSPVAMLKSIRILLSITTFYDYEIWQKDVKTAFLNANFEESIYMAQPEGFIEKGQ 120
           DYEE FS  AM+KSIRILLSI TFYDYEIWQ DVKT FLNAN EESIYM QPE FI+KGQ
Sbjct: 309 DYEEVFS-FAMIKSIRILLSIATFYDYEIWQMDVKTTFLNANLEESIYMVQPERFIQKGQ 368

Query: 121 EQKVCKLQKSIYGLKKACRSSNIRFDTTIKSYDFEQNVDKHCVHKKVVNSIVAFLVLYVD 180
           EQK+CKLQKSIYGLK+A RS NIRFDT IKSY  EQNVD+ CV+K+++NS VAFLVLYVD
Sbjct: 369 EQKICKLQKSIYGLKQASRSCNIRFDTAIKSYGLEQNVDEPCVYKRIMNSTVAFLVLYVD 428

Query: 181 DILLIGNDVGYLTDIKKWLTTQFQMKDLRDAQ 213
           DILLIGNDVG+L DIKKWL  QFQMKDL +AQ
Sbjct: 429 DILLIGNDVGHLADIKKWLAMQFQMKDLGNAQ 459

[Close]

BLAST of Cmc08g0227681 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 2.5e-46
Identity = 94/213 (44.13%), Postives = 136/213 (63.85%), Query Frame = 0


Query: 1    MDLEMESIYFNSAWTLIDQPNDVKPFSCKWIYKRKRDKVGNVQTFKARLVAKGYTQREGV 60
            M  EMES+  N  + L++ P   +P  CKW++K K+D    +  +KARLV KG+ Q++G+
Sbjct: 830  MQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGI 889

Query: 61   DYEETFSPVAMLKSIRILLSITTFYDYEIWQKDVKTAFLNANFEESIYMAQPEGFIEKGQ 120
            D++E FSPV  + SIR +LS+    D E+ Q DVKTAFL+ + EE IYM QPEGF   G+
Sbjct: 890  DFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGK 949

Query: 121  EQKVCKLQKSIYGLKKACRSSNIRFDTTIKSYDFEQNVDKHCVH-KKVVNSIVAFLVLYV 180
            +  VCKL KS+YGLK+A R   ++FD+ +KS  + +     CV+ K+   +    L+LYV
Sbjct: 950  KHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYV 1009

Query: 181  DDILLIGNDVGYLTDIKKWLTTQFQMKDLRDAQ 213
            DD+L++G D G +  +K  L+  F MKDL  AQ
Sbjct: 1010 DDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQ 1042

[Close]

BLAST of Cmc08g0227681 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 152.1 bits (383), Expect = 6.9e-36
Identity = 77/213 (36.15%), Postives = 129/213 (60.56%), Query Frame = 0


Query: 1    MDLEMESIYFNSAWTLIDQPNDVKPFSCKWIYKRKRDKVGNVQTFKARLVAKGYTQREGV 60
            ++ E+ +   N+ WT+  +P +      +W++  K +++GN   +KARLVA+G+TQ+  +
Sbjct: 910  INTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQI 969

Query: 61   DYEETFSPVAMLKSIRILLSITTFYDYEIWQKDVKTAFLNANFEESIYMAQPEGFIEKGQ 120
            DYEETF+PVA + S R +LS+   Y+ ++ Q DVKTAFLN   +E IYM  P+G      
Sbjct: 970  DYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGI--SCN 1029

Query: 121  EQKVCKLQKSIYGLKKACRSSNIRFDTTIKSYDFEQNVDKHCVH---KKVVNSIVAFLVL 180
               VCKL K+IYGLK+A R     F+  +K  +F  +    C++   K  +N  + +++L
Sbjct: 1030 SDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENI-YVLL 1089

Query: 181  YVDDILLIGNDVGYLTDIKKWLTTQFQMKDLRD 211
            YVDD+++   D+  + + K++L  +F+M DL +
Sbjct: 1090 YVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNE 1119

[Close]

BLAST of Cmc08g0227681 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 9.9e-35
Identity = 79/208 (37.98%), Postives = 119/208 (57.21%), Query Frame = 0


Query: 1    MDLEMESIYFNSAWTLI-DQPNDVKPFSCKWIYKRKRDKVGNVQTFKARLVAKGYTQREG 60
            M  E+ +   N  W L+   P+ V    C+WI+ +K +  G++  +KARLVAKGY QR G
Sbjct: 972  MGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPG 1031

Query: 61   VDYEETFSPVAMLKSIRILLSITTFYDYEIWQKDVKTAFLNANFEESIYMAQPEGFIEKG 120
            +DY ETFSPV    SIRI+L +     + I Q DV  AFL     + +YM+QP GFI+K 
Sbjct: 1032 LDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKD 1091

Query: 121  QEQKVCKLQKSIYGLKKACRSSNIRFDTTIKSYDFEQNVDKHCVHKKVVNSIVAFLVLYV 180
            +   VCKL+K++YGLK+A R+  +     + +  F  +V    +        + ++++YV
Sbjct: 1092 RPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYV 1151

Query: 181  DDILLIGNDVGYLTDIKKWLTTQFQMKD 208
            DDIL+ GND   L +    L+ +F +KD
Sbjct: 1152 DDILITGNDPTLLHNTLDNLSQRFSVKD 1179

[Close]

BLAST of Cmc08g0227681 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.2e-34
Identity = 78/211 (36.97%), Postives = 119/211 (56.40%), Query Frame = 0


Query: 1    MDLEMESIYFNSAWTLI-DQPNDVKPFSCKWIYKRKRDKVGNVQTFKARLVAKGYTQREG 60
            M  E+ +   N  W L+   P  V    C+WI+ +K +  G++  +KARLVAKGY QR G
Sbjct: 955  MGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQRPG 1014

Query: 61   VDYEETFSPVAMLKSIRILLSITTFYDYEIWQKDVKTAFLNANFEESIYMAQPEGFIEKG 120
            +DY ETFSPV    SIRI+L +     + I Q DV  AFL     + +YM+QP GF++K 
Sbjct: 1015 LDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKD 1074

Query: 121  QEQKVCKLQKSIYGLKKACRSSNIRFDTTIKSYDFEQNVDKHCVHKKVVNSIVAFLVLYV 180
            +   VC+L+K+IYGLK+A R+  +   T + +  F  ++    +        + ++++YV
Sbjct: 1075 RPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQRGRSIIYMLVYV 1134

Query: 181  DDILLIGNDVGYLTDIKKWLTTQFQMKDLRD 211
            DDIL+ GND   L      L+ +F +K+  D
Sbjct: 1135 DDILITGNDTVLLKHTLDALSQRFSVKEHED 1165

[Close]

BLAST of Cmc08g0227681 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.5e-11
Identity = 31/81 (38.27%), Postives = 48/81 (59.26%), Query Frame = 0


Query: 1   MDLEMESIYFNSAWTLIDQPNDVKPFSCKWIYKRKRDKVGNVQTFKARLVAKGYTQREGV 60
           M  E++++  N  W L+  P +     CKW++K K    G +   KARLVAKG+ Q EG+
Sbjct: 44  MQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGI 103

Query: 61  DYEETFSPVAMLKSIRILLSI 82
            + ET+SPV    +IR +L++
Sbjct: 104 YFVETYSPVVRTATIRTILNV 124

[Close]

BLAST of Cmc08g0227681 vs. ExPASy TrEMBL
Match: E2GK51 (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 7.2e-97
Identity = 175/212 (82.55%), Postives = 191/212 (90.09%), Query Frame = 0


Query: 1    MDLEMESIYFNSAWTLIDQPNDVKPFSCKWIYKRKRDKVGNVQTFKARLVAKGYTQREGV 60
            M+LEMES+YFNS WTL+D P+DVKP  CKWIYKRKRD+ G VQTFKARLVAKGYTQ+EGV
Sbjct: 824  MNLEMESMYFNSVWTLVDLPSDVKPIGCKWIYKRKRDQAGKVQTFKARLVAKGYTQKEGV 883

Query: 61   DYEETFSPVAMLKSIRILLSITTFYDYEIWQKDVKTAFLNANFEESIYMAQPEGFIEKGQ 120
            DYEETFSPVAMLKSIRILLSI TFY+YEIWQ DVKTAFLN N EESIYM QPEGFI + Q
Sbjct: 884  DYEETFSPVAMLKSIRILLSIATFYNYEIWQMDVKTAFLNGNLEESIYMVQPEGFIAQDQ 943

Query: 121  EQKVCKLQKSIYGLKKACRSSNIRFDTTIKSYDFEQNVDKHCVHKKVVNSIVAFLVLYVD 180
            EQKVCKLQKSIYGLK+A RS NIRFDT IKSY FEQNVD+ CV+KK+VNS+VAFL+LYVD
Sbjct: 944  EQKVCKLQKSIYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKKIVNSVVAFLILYVD 1003

Query: 181  DILLIGNDVGYLTDIKKWLTTQFQMKDLRDAQ 213
            DILLIGNDV YLTD+KKWL TQFQMKDL +AQ
Sbjct: 1004 DILLIGNDVEYLTDVKKWLNTQFQMKDLGEAQ 1035

[Close]

BLAST of Cmc08g0227681 vs. ExPASy TrEMBL
Match: A0A5A7TTA2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G001350 PE=4 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 2.0e-94
Identity = 168/212 (79.25%), Postives = 190/212 (89.62%), Query Frame = 0


Query: 1   MDLEMESIYFNSAWTLIDQPNDVKPFSCKWIYKRKRDKVGNVQTFKARLVAKGYTQREGV 60
           MDL+MES+Y NS WTL+DQPN+++P  CKWIYKRKRD+   VQTF+ARLVAKGYTQ+EG+
Sbjct: 154 MDLKMESMYSNSVWTLVDQPNNIRPIGCKWIYKRKRDQTAKVQTFRARLVAKGYTQKEGI 213

Query: 61  DYEETFSPVAMLKSIRILLSITTFYDYEIWQKDVKTAFLNANFEESIYMAQPEGFIEKGQ 120
           DYEETFSP+AM+KSIRILLSI TFYDYEIWQ DVKTAFLN N EESIYM QPEGFI+KGQ
Sbjct: 214 DYEETFSPIAMIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMVQPEGFIQKGQ 273

Query: 121 EQKVCKLQKSIYGLKKACRSSNIRFDTTIKSYDFEQNVDKHCVHKKVVNSIVAFLVLYVD 180
           EQKVCKLQKSIYGLK+A RS NIRFDT IKSY FEQNVD+ CV+K+++NS VAFLVLYVD
Sbjct: 274 EQKVCKLQKSIYGLKQASRSWNIRFDTGIKSYGFEQNVDEPCVYKRIINSTVAFLVLYVD 333

Query: 181 DILLIGNDVGYLTDIKKWLTTQFQMKDLRDAQ 213
           DILLIGN+V +LTDIK+WL TQFQMKDL  AQ
Sbjct: 334 DILLIGNEVDHLTDIKEWLDTQFQMKDLGSAQ 365

[Close]

BLAST of Cmc08g0227681 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 6.3e-93
Identity = 170/212 (80.19%), Postives = 183/212 (86.32%), Query Frame = 0


Query: 1   MDLEMESIYFNSAWTLIDQPNDVKPFSCKWIYKRKRDKVGNVQTFKARLVAKGYTQREGV 60
           MDLEMES+YFNS W L+D P  VKP  CKWIYKRKRD  G VQTFKARLVAKGYTQREGV
Sbjct: 732 MDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGV 791

Query: 61  DYEETFSPVAMLKSIRILLSITTFYDYEIWQKDVKTAFLNANFEESIYMAQPEGFIEKGQ 120
           DYEETFSPVAMLKSIRILLSI TFYDYEIWQ DVKTAFLN N EESI+M+QPEGFI +GQ
Sbjct: 792 DYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQ 851

Query: 121 EQKVCKLQKSIYGLKKACRSSNIRFDTTIKSYDFEQNVDKHCVHKKVVNSIVAFLVLYVD 180
           EQKVCKL +SIYGLK+A RS NIRFDT IKSY F+QNVD+ CV+KK+    VAFLVLYVD
Sbjct: 852 EQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVD 911

Query: 181 DILLIGNDVGYLTDIKKWLTTQFQMKDLRDAQ 213
           DILLIGNDVGYLTD+K WL  QFQMKDL +AQ
Sbjct: 912 DILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQ 943

[Close]

BLAST of Cmc08g0227681 vs. ExPASy TrEMBL
Match: A0A5D3CYF4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G001110 PE=4 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 6.3e-93
Identity = 170/212 (80.19%), Postives = 183/212 (86.32%), Query Frame = 0


Query: 1   MDLEMESIYFNSAWTLIDQPNDVKPFSCKWIYKRKRDKVGNVQTFKARLVAKGYTQREGV 60
           MDLEMES+YFNS W L+D P  VKP  CKWIYKRKRD  G VQTFKARLVAKGYTQREGV
Sbjct: 342 MDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGV 401

Query: 61  DYEETFSPVAMLKSIRILLSITTFYDYEIWQKDVKTAFLNANFEESIYMAQPEGFIEKGQ 120
           DYEETFSPVAMLKSIRILLSI TFYDYEIWQ DVKTAFLN N EESI+M+QPEGFI +GQ
Sbjct: 402 DYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQ 461

Query: 121 EQKVCKLQKSIYGLKKACRSSNIRFDTTIKSYDFEQNVDKHCVHKKVVNSIVAFLVLYVD 180
           EQKVCKL +SIYGLK+A RS NIRFDT IKSY F+QNVD+ CV+KK+    VAFLVLYVD
Sbjct: 462 EQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVD 521

Query: 181 DILLIGNDVGYLTDIKKWLTTQFQMKDLRDAQ 213
           DILLIGNDVGYLTD+K WL  QFQMKDL +AQ
Sbjct: 522 DILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQ 553

[Close]

BLAST of Cmc08g0227681 vs. ExPASy TrEMBL
Match: A0A5A7UYE8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001570 PE=4 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 6.3e-93
Identity = 170/212 (80.19%), Postives = 183/212 (86.32%), Query Frame = 0


Query: 1   MDLEMESIYFNSAWTLIDQPNDVKPFSCKWIYKRKRDKVGNVQTFKARLVAKGYTQREGV 60
           MDLEMES+YFNS W L+D P  VKP  CKWIYKRKRD  G VQTFKARLVAKGYTQREGV
Sbjct: 606 MDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGV 665

Query: 61  DYEETFSPVAMLKSIRILLSITTFYDYEIWQKDVKTAFLNANFEESIYMAQPEGFIEKGQ 120
           DYEETFSPVAMLKSIRILLSI TFYDYEIWQ DVKTAFLN N EESI+M+QPEGFI +GQ
Sbjct: 666 DYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQ 725

Query: 121 EQKVCKLQKSIYGLKKACRSSNIRFDTTIKSYDFEQNVDKHCVHKKVVNSIVAFLVLYVD 180
           EQKVCKL +SIYGLK+A RS NIRFDT IKSY F+QNVD+ CV+KK+    VAFLVLYVD
Sbjct: 726 EQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVD 785

Query: 181 DILLIGNDVGYLTDIKKWLTTQFQMKDLRDAQ 213
           DILLIGNDVGYLTD+K WL  QFQMKDL +AQ
Sbjct: 786 DILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQ 817

[Close]

BLAST of Cmc08g0227681 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 167.2 bits (422), Expect = 1.5e-41
Identity = 80/212 (37.74%), Postives = 131/212 (61.79%), Query Frame = 0


Query: 1   MDLEMESIYFNSAWTLIDQPNDVKPFSCKWIYKRKRDKVGNVQTFKARLVAKGYTQREGV 60
           MD E+ ++     W +   P + KP  CKW+YK K +  G ++ +KARLVAKGYTQ+EG+
Sbjct: 102 MDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGI 161

Query: 61  DYEETFSPVAMLKSIRILLSITTFYDYEIWQKDVKTAFLNANFEESIYMAQPEGFIEKGQ 120
           D+ ETFSPV  L S++++L+I+  Y++ + Q D+  AFLN + +E IYM  P G+  +  
Sbjct: 162 DFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQG 221

Query: 121 E----QKVCKLQKSIYGLKKACRSSNIRFDTTIKSYDFEQNVDKHCVHKKVVNSIVAFLV 180
           +      VC L+KSIYGLK+A R   ++F  T+  + F Q+   H    K+  ++   ++
Sbjct: 222 DSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVL 281

Query: 181 LYVDDILLIGNDVGYLTDIKKWLTTQFQMKDL 209
           +YVDDI++  N+   + ++K  L + F+++DL
Sbjct: 282 VYVDDIIICSNNDAAVDELKSQLKSCFKLRDL 313

[Close]

BLAST of Cmc08g0227681 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-12
Identity = 31/81 (38.27%), Postives = 48/81 (59.26%), Query Frame = 0


Query: 1   MDLEMESIYFNSAWTLIDQPNDVKPFSCKWIYKRKRDKVGNVQTFKARLVAKGYTQREGV 60
           M  E++++  N  W L+  P +     CKW++K K    G +   KARLVAKG+ Q EG+
Sbjct: 44  MQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGI 103

Query: 61  DYEETFSPVAMLKSIRILLSI 82
            + ET+SPV    +IR +L++
Sbjct: 104 YFVETYSPVVRTATIRTILNV 124

The following BLAST results are available for this feature:

BLAST of Cmc08g0227681 vs. NCBI nr


Match Name	E-value	Identity	Description
ADJ18449.1	1.5e-96	82.55	gag/pol protein, partial [Bryonia dioica]	[more]
KAA0045356.1	4.1e-94	79.25	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK15984.1	1.3e-92	80.19	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0025945.1	1.3e-92	80.19	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]
TYK03644.1	1.3e-92	80.19	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc08g0227681 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	2.5e-46	44.13	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	6.9e-36	36.15	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	9.9e-35	37.98	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	2.2e-34	36.97	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P92520	1.5e-11	38.27	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc08g0227681 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
E2GK51	7.2e-97	82.55	Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1	[more]
A0A5A7TTA2	2.0e-94	79.25	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G0013...	[more]
A0A5A7TZD0	6.3e-93	80.19	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5D3CYF4	6.3e-93	80.19	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00111...	[more]
A0A5A7UYE8	6.3e-93	80.19	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G0015...	[more]

BLAST of Cmc08g0227681 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.5e-41	37.74	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	1.1e-12	38.27	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 11..211 e-value: 8.7E-60 score: 202.3
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 8..209
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 12..195

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0227681.1	Cmc08g0227681.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding