Cmc08g0227581 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0227581
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	30S ribosomal protein S11, chloroplastic
Location	CMiso1.1chr08: 20764393 .. 20764659 (+)
RNA-Seq Expression	Cmc08g0227581
Synteny	Cmc08g0227581

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAATACAAGTGCATACAAAAAATTAAGCCAACAAAAAGGGAGCTCAACTAAAGAGACTCCAACTAAACAAATTAATACCACCTATAGAATTATTACAAAGAAAGGGATGCAACGAGCCGAAGTTATGATAAAGGGCCCCGGTCTCGAAAGAGATGCAGCATTAAGAGCTATTCGGAGAAGCGGTATACTATTAAGTTTCATACGGGATGTAACCCCTATGCCACATAATGGCTGTAGGCCCCCTAAAAAACGACGTGTGTAA

mRNA sequence

ATGAAAAATACAAGTGCATACAAAAAATTAAGCCAACAAAAAGGGAGCTCAACTAAAGAGACTCCAACTAAACAAATTAATACCACCTATAGAATTATTACAAAGAAAGGGATGCAACGAGCCGAAGTTATGATAAAGGGCCCCGGTCTCGAAAGAGATGCAGCATTAAGAGCTATTCGGAGAAGCGGTATACTATTAAGTTTCATACGGGATGTAACCCCTATGCCACATAATGGCTGTAGGCCCCCTAAAAAACGACGTGTGTAA

Coding sequence (CDS)

ATGAAAAATACAAGTGCATACAAAAAATTAAGCCAACAAAAAGGGAGCTCAACTAAAGAGACTCCAACTAAACAAATTAATACCACCTATAGAATTATTACAAAGAAAGGGATGCAACGAGCCGAAGTTATGATAAAGGGCCCCGGTCTCGAAAGAGATGCAGCATTAAGAGCTATTCGGAGAAGCGGTATACTATTAAGTTTCATACGGGATGTAACCCCTATGCCACATAATGGCTGTAGGCCCCCTAAAAAACGACGTGTGTAA

Protein sequence

MKNTSAYKKLSQQKGSSTKETPTKQINTTYRIITKKGMQRAEVMIKGPGLERDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV

Homology

[Close]

BLAST of Cmc08g0227581 vs. NCBI nr
Match: YP_009355638.1 (30S ribosomal protein S11 [Acer griseum] >YP_009763836.1 30S ribosomal protein S11 [Acer triflorum] >YP_009873068.1 30S ribosomal protein S11 [Acer cissifolium] >YP_009873244.1 ribosomal protein S11 [Acer mandshuricum] >YP_009873332.1 30S ribosomal protein S11 [Acer nikoense] >ARB51897.1 30S ribosomal protein S11 [Acer griseum] >QIS64367.1 30S ribosomal protein S11 [Acer triflorum] >QKT28086.1 30S ribosomal protein S11 [Acer cissifolium] >QKT28274.1 ribosomal protein S11 [Acer mandshuricum] >QKT28351.1 30S ribosomal protein S11 [Acer nikoense])

HSP 1 Score: 111.3 bits (277), Expect = 4.3e-21
Identity = 52/63 (82.54%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 26  INTTYRIITKKGMQRAEVMIKGPGLERDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKK 85
           +    R +T +GMQRAEVMIKGPGL RDAALRAIRRSGILLSF+RDVTPMPHNGCRPPKK
Sbjct: 76  VGNAIRAVTDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGCRPPKK 135

Query: 86  RRV 89
           RRV
Sbjct: 136 RRV 138

[Close]

BLAST of Cmc08g0227581 vs. NCBI nr
Match: QKY62941.1 (30S ribosomal protein S11 [Acer oblongum])

HSP 1 Score: 111.3 bits (277), Expect = 4.3e-21
Identity = 52/63 (82.54%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 26  INTTYRIITKKGMQRAEVMIKGPGLERDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKK 85
           +    R +T +GMQRAEVMIKGPGL RDAALRAIRRSGILLSF+RDVTPMPHNGCRPPKK
Sbjct: 76  VGNAIRAVTDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGCRPPKK 135

Query: 86  RRV 89
           RRV
Sbjct: 136 RRV 138

[Close]

BLAST of Cmc08g0227581 vs. NCBI nr
Match: QXO90366.1 (ribosomal protein S11 [Tara cacalaco])

HSP 1 Score: 110.9 bits (276), Expect = 5.6e-21
Identity = 53/58 (91.38%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 31  RIITKKGMQRAEVMIKGPGLERDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV 89
           R +T +GMQRAEVMIKGPGL RDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV
Sbjct: 81  RTVTDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV 138

[Close]

BLAST of Cmc08g0227581 vs. NCBI nr
Match: QGA86353.1 (ribosomal protein S11 [Xanthophyllum eurhynchum])

HSP 1 Score: 110.9 bits (276), Expect = 5.6e-21
Identity = 53/58 (91.38%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 31  RIITKKGMQRAEVMIKGPGLERDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV 89
           R IT +GMQRAEVMIKGPGL RDAALRAIRRSGILLSFIRD+TPMPHNGCRPPKKRRV
Sbjct: 81  RTITDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDITPMPHNGCRPPKKRRV 138

[Close]

BLAST of Cmc08g0227581 vs. NCBI nr
Match: QTA71780.1 (ribosomal protein S11 [Coriaria nepalensis])

HSP 1 Score: 110.9 bits (276), Expect = 5.6e-21
Identity = 53/58 (91.38%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 31  RIITKKGMQRAEVMIKGPGLERDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV 89
           RI+  +GMQRAEVMIKGPGL RDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV
Sbjct: 81  RIVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV 138

[Close]

BLAST of Cmc08g0227581 vs. ExPASy Swiss-Prot
Match: P06506 (30S ribosomal protein S11, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps11 PE=1 SV=4)

HSP 1 Score: 109.4 bits (272), Expect = 2.1e-23
Identity = 51/58 (87.93%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 31  RIITKKGMQRAEVMIKGPGLERDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV 89
           R + ++GMQRAEVMIKGPGL RDAALRAIRRSGILLSF+RDVTPMPHNGCRPPKKRRV
Sbjct: 81  RTVVEQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGCRPPKKRRV 138

[Close]

BLAST of Cmc08g0227581 vs. ExPASy Swiss-Prot
Match: Q09WY4 (30S ribosomal protein S11, chloroplastic OS=Morus indica OX=248361 GN=rps11 PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.8e-23
Identity = 52/58 (89.66%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 31  RIITKKGMQRAEVMIKGPGLERDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV 89
           R +  +GMQRAEVMIKGPGL RDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV
Sbjct: 81  RTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV 138

[Close]

BLAST of Cmc08g0227581 vs. ExPASy Swiss-Prot
Match: B1A968 (30S ribosomal protein S11, chloroplastic OS=Carica papaya OX=3649 GN=rps11 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.6e-23
Identity = 51/58 (87.93%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 31  RIITKKGMQRAEVMIKGPGLERDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV 89
           R +  +GMQRAEVMIKGPGL RDAALRAIRRSGILLSF+RDVTPMPHNGCRPPKKRRV
Sbjct: 81  RAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGCRPPKKRRV 138

[Close]

BLAST of Cmc08g0227581 vs. ExPASy Swiss-Prot
Match: A8SED6 (30S ribosomal protein S11, chloroplastic OS=Ceratophyllum demersum OX=4428 GN=rps11 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.6e-23
Identity = 51/58 (87.93%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 31  RIITKKGMQRAEVMIKGPGLERDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV 89
           R +  +GMQRAEVMIKGPGL RDAALRAIRRSGILLSF+RDVTPMPHNGCRPPKKRRV
Sbjct: 81  RTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGCRPPKKRRV 138

[Close]

BLAST of Cmc08g0227581 vs. ExPASy Swiss-Prot
Match: Q06GW4 (30S ribosomal protein S11, chloroplastic OS=Drimys granadensis OX=224735 GN=rps11 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.6e-23
Identity = 51/58 (87.93%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 31  RIITKKGMQRAEVMIKGPGLERDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV 89
           R +  +GMQRAEVMIKGPGL RDAALRAIRRSGILLSF+RDVTPMPHNGCRPPKKRRV
Sbjct: 73  RTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGCRPPKKRRV 130

[Close]

BLAST of Cmc08g0227581 vs. ExPASy TrEMBL
Match: A0A7D5B4P8 (30S ribosomal protein S11, chloroplastic OS=Acer nikoense OX=171213 GN=rps11 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.1e-21
Identity = 52/63 (82.54%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 26  INTTYRIITKKGMQRAEVMIKGPGLERDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKK 85
           +    R +T +GMQRAEVMIKGPGL RDAALRAIRRSGILLSF+RDVTPMPHNGCRPPKK
Sbjct: 76  VGNAIRAVTDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGCRPPKK 135

Query: 86  RRV 89
           RRV
Sbjct: 136 RRV 138

[Close]

BLAST of Cmc08g0227581 vs. ExPASy TrEMBL
Match: A0A7D5A884 (30S ribosomal protein S11, chloroplastic OS=Acer cissifolium OX=134796 GN=rps11 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.1e-21
Identity = 52/63 (82.54%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 26  INTTYRIITKKGMQRAEVMIKGPGLERDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKK 85
           +    R +T +GMQRAEVMIKGPGL RDAALRAIRRSGILLSF+RDVTPMPHNGCRPPKK
Sbjct: 76  VGNAIRAVTDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGCRPPKK 135

Query: 86  RRV 89
           RRV
Sbjct: 136 RRV 138

[Close]

BLAST of Cmc08g0227581 vs. ExPASy TrEMBL
Match: A0A7D4WH16 (30S ribosomal protein S11, chloroplastic OS=Acer mandshuricum OX=168564 GN=rps11 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.1e-21
Identity = 52/63 (82.54%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 26  INTTYRIITKKGMQRAEVMIKGPGLERDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKK 85
           +    R +T +GMQRAEVMIKGPGL RDAALRAIRRSGILLSF+RDVTPMPHNGCRPPKK
Sbjct: 76  VGNAIRAVTDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGCRPPKK 135

Query: 86  RRV 89
           RRV
Sbjct: 136 RRV 138

[Close]

BLAST of Cmc08g0227581 vs. ExPASy TrEMBL
Match: A0A6H0CDB5 (30S ribosomal protein S11, chloroplastic OS=Acer triflorum OX=134799 GN=rps11 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.1e-21
Identity = 52/63 (82.54%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 26  INTTYRIITKKGMQRAEVMIKGPGLERDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKK 85
           +    R +T +GMQRAEVMIKGPGL RDAALRAIRRSGILLSF+RDVTPMPHNGCRPPKK
Sbjct: 76  VGNAIRAVTDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGCRPPKK 135

Query: 86  RRV 89
           RRV
Sbjct: 136 RRV 138

[Close]

BLAST of Cmc08g0227581 vs. ExPASy TrEMBL
Match: A0A1V0G167 (30S ribosomal protein S11, chloroplastic OS=Acer griseum OX=168561 GN=rps11 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.1e-21
Identity = 52/63 (82.54%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 26  INTTYRIITKKGMQRAEVMIKGPGLERDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKK 85
           +    R +T +GMQRAEVMIKGPGL RDAALRAIRRSGILLSF+RDVTPMPHNGCRPPKK
Sbjct: 76  VGNAIRAVTDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGCRPPKK 135

Query: 86  RRV 89
           RRV
Sbjct: 136 RRV 138

[Close]

BLAST of Cmc08g0227581 vs. TAIR 10
Match: ATCG00750.1 (ribosomal protein S11 )

HSP 1 Score: 106.3 bits (264), Expect = 1.3e-23
Identity = 50/58 (86.21%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 31  RIITKKGMQRAEVMIKGPGLERDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV 89
           R +  +GMQRAEV IKGPGL RDAALRAIRRSGILLSF+RDVTPMPHNGCRPPKKRRV
Sbjct: 81  RAVVDQGMQRAEVRIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGCRPPKKRRV 138

The following BLAST results are available for this feature:

BLAST of Cmc08g0227581 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009355638.1	4.3e-21	82.54	30S ribosomal protein S11 [Acer griseum] >YP_009763836.1 30S ribosomal protein S...	[more]
QKY62941.1	4.3e-21	82.54	30S ribosomal protein S11 [Acer oblongum]	[more]
QXO90366.1	5.6e-21	91.38	ribosomal protein S11 [Tara cacalaco]	[more]
QGA86353.1	5.6e-21	91.38	ribosomal protein S11 [Xanthophyllum eurhynchum]	[more]
QTA71780.1	5.6e-21	91.38	ribosomal protein S11 [Coriaria nepalensis]	[more]

BLAST of Cmc08g0227581 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P06506	2.1e-23	87.93	30S ribosomal protein S11, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps11 P...	[more]
Q09WY4	2.8e-23	89.66	30S ribosomal protein S11, chloroplastic OS=Morus indica OX=248361 GN=rps11 PE=3...	[more]
B1A968	3.6e-23	87.93	30S ribosomal protein S11, chloroplastic OS=Carica papaya OX=3649 GN=rps11 PE=3 ...	[more]
A8SED6	3.6e-23	87.93	30S ribosomal protein S11, chloroplastic OS=Ceratophyllum demersum OX=4428 GN=rp...	[more]
Q06GW4	3.6e-23	87.93	30S ribosomal protein S11, chloroplastic OS=Drimys granadensis OX=224735 GN=rps1...	[more]

BLAST of Cmc08g0227581 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7D5B4P8	2.1e-21	82.54	30S ribosomal protein S11, chloroplastic OS=Acer nikoense OX=171213 GN=rps11 PE=...	[more]
A0A7D5A884	2.1e-21	82.54	30S ribosomal protein S11, chloroplastic OS=Acer cissifolium OX=134796 GN=rps11 ...	[more]
A0A7D4WH16	2.1e-21	82.54	30S ribosomal protein S11, chloroplastic OS=Acer mandshuricum OX=168564 GN=rps11...	[more]
A0A6H0CDB5	2.1e-21	82.54	30S ribosomal protein S11, chloroplastic OS=Acer triflorum OX=134799 GN=rps11 PE...	[more]
A0A1V0G167	2.1e-21	82.54	30S ribosomal protein S11, chloroplastic OS=Acer griseum OX=168561 GN=rps11 PE=3...	[more]

BLAST of Cmc08g0227581 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00750.1	1.3e-23	86.21	ribosomal protein S11	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001971	Ribosomal protein S11	PIRSF	PIRSF002131	RPS11p_RPS11a_RPS14e_RPS11o	coord: 3..88 e-value: 1.5E-17 score: 61.7
IPR001971	Ribosomal protein S11	PFAM	PF00411	Ribosomal_S11	coord: 23..87 e-value: 1.5E-22 score: 80.1
IPR001971	Ribosomal protein S11	PANTHER	PTHR11759	40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11	coord: 27..87
IPR036967	Ribosomal protein S11 superfamily	GENE3D	3.30.420.80	Ribosomal protein S11	coord: 3..88 e-value: 2.3E-19 score: 71.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	PANTHER	PTHR11759:SF49	30S RIBOSOMAL PROTEIN S11, CHLOROPLASTIC	coord: 27..87
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 26..88
IPR018102	Ribosomal S11, conserved site	PROSITE	PS00054	RIBOSOMAL_S11	coord: 56..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0227581.1	Cmc08g0227581.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:1990904	ribonucleoprotein complex
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome