Cmc08g0227551 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0227551
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr08: 20703024 .. 20703713 (+)
RNA-Seq Expression	Cmc08g0227551
Synteny	Cmc08g0227551

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGACGTATTCCCTATGCCTCAGTTGTGGGCAGCTTAATGTATGCTATGCTCTGCACTAGGCCAGACATTTGTTATGCAGTAGGAATAGTCAGTAGGTATCAGTCCAATCCAGGGTTAGACCATTGGACGACGATTAAAATTATTCTCAAGTATCTTAGGAGAACGAGAGACTACATGCTTGTGTATGGAGCTAAGGATTTGATCCTTACAAGATACACTGATTCTGATTTCCAAACCGATAAGGATTCTAGAAAATCCACATCGGGATCAGTGTTCACCCTAAATGATGGAGCTGTAGTATGGCGTAGCATCAAGCAAGGATGCATTGCAGACTCTACAATGGAGGCTGAATACGTCGCTGCTTGTGAAGCAGCAAAAGAAGCAGTTTGGCTTAGGAAGTTCCTACATGATTTGGAAGTTGTTCCAAACATGTACTTGCCCATCACTCTATATTGTGATAACAGTGGGGCAGTAGCCAATTCTAAAGAACCTCGCAGCCATAAACGAGAGAAACACATAGAGAGGAAGTATCACCTGATACGGGAGATTGTGCAACGAGGGGATGTGATCGTCACCAAGATCACTTCGCAGCACAACATTGATGATCCATTTACGAAGACTCTCATGGCTAAAGTGTTCGAGGGTCATATAGAAAGTCTAGGTCTACGAGATATGTACATTAGGTAA

mRNA sequence

ATGAGACGTATTCCCTATGCCTCAGTTGTGGGCAGCTTAATGTATGCTATGCTCTGCACTAGGCCAGACATTTGTTATGCAGTAGGAATAGTCAGTAGGTATCAGTCCAATCCAGGGTTAGACCATTGGACGACGATTAAAATTATTCTCAAGTATCTTAGGAGAACGAGAGACTACATGCTTGTGTATGGAGCTAAGGATTTGATCCTTACAAGATACACTGATTCTGATTTCCAAACCGATAAGGATTCTAGAAAATCCACATCGGGATCAGTGTTCACCCTAAATGATGGAGCTGTAGTATGGCGTAGCATCAAGCAAGGATGCATTGCAGACTCTACAATGGAGGCTGAATACGTCGCTGCTTGTGAAGCAGCAAAAGAAGCAGTTTGGCTTAGGAAGTTCCTACATGATTTGGAAGTTGTTCCAAACATGTACTTGCCCATCACTCTATATTGTGATAACAGTGGGGCAGTAGCCAATTCTAAAGAACCTCGCAGCCATAAACGAGAGAAACACATAGAGAGGAAGTATCACCTGATACGGGAGATTGTGCAACGAGGGGATGTGATCGTCACCAAGATCACTTCGCAGCACAACATTGATGATCCATTTACGAAGACTCTCATGGCTAAAGTGTTCGAGGGTCATATAGAAAGTCTAGGTCTACGAGATATGTACATTAGGTAA

Coding sequence (CDS)

ATGAGACGTATTCCCTATGCCTCAGTTGTGGGCAGCTTAATGTATGCTATGCTCTGCACTAGGCCAGACATTTGTTATGCAGTAGGAATAGTCAGTAGGTATCAGTCCAATCCAGGGTTAGACCATTGGACGACGATTAAAATTATTCTCAAGTATCTTAGGAGAACGAGAGACTACATGCTTGTGTATGGAGCTAAGGATTTGATCCTTACAAGATACACTGATTCTGATTTCCAAACCGATAAGGATTCTAGAAAATCCACATCGGGATCAGTGTTCACCCTAAATGATGGAGCTGTAGTATGGCGTAGCATCAAGCAAGGATGCATTGCAGACTCTACAATGGAGGCTGAATACGTCGCTGCTTGTGAAGCAGCAAAAGAAGCAGTTTGGCTTAGGAAGTTCCTACATGATTTGGAAGTTGTTCCAAACATGTACTTGCCCATCACTCTATATTGTGATAACAGTGGGGCAGTAGCCAATTCTAAAGAACCTCGCAGCCATAAACGAGAGAAACACATAGAGAGGAAGTATCACCTGATACGGGAGATTGTGCAACGAGGGGATGTGATCGTCACCAAGATCACTTCGCAGCACAACATTGATGATCCATTTACGAAGACTCTCATGGCTAAAGTGTTCGAGGGTCATATAGAAAGTCTAGGTCTACGAGATATGTACATTAGGTAA

Protein sequence

MRRIPYASVVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTTIKIILKYLRRTRDYMLVYGAKDLILTRYTDSDFQTDKDSRKSTSGSVFTLNDGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMYLPITLYCDNSGAVANSKEPRSHKREKHIERKYHLIREIVQRGDVIVTKITSQHNIDDPFTKTLMAKVFEGHIESLGLRDMYIR

Homology

[Close]

BLAST of Cmc08g0227551 vs. NCBI nr
Match: KAA0061170.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 441.8 bits (1135), Expect = 3.6e-120
Identity = 217/229 (94.76%), Postives = 221/229 (96.51%), Query Frame = 0


Query: 1   MRRIPYASVVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTTIKIILKYLRRTRDYM 60
           MRRIPYAS VGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTT+KIILKYLRRTRDYM
Sbjct: 168 MRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTTVKIILKYLRRTRDYM 227

Query: 61  LVYGAKDLILTRYTDSDFQTDKDSRKSTSGSVFTLNDGAVVWRSIKQGCIADSTMEAEYV 120
           LVYGAKDLILT YTDSDFQTDKDSRKSTSGSVFTLN+GAVVWRSIKQGCIADSTMEAEYV
Sbjct: 228 LVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNEGAVVWRSIKQGCIADSTMEAEYV 287

Query: 121 AACEAAKEAVWLRKFLHDLEVVPNMYLPITLYCDNSGAVANSKEPRSHKREKHIERKYHL 180
           AACEAAKEAVWLRKFLHDLEVVPNM LPITLYCDNSGAVANSKEPRSHKR KHIERKYHL
Sbjct: 288 AACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL 347

Query: 181 IREIVQRGDVIVTKITSQHNIDDPFTKTLMAKVFEGHIESLGLRDMYIR 230
           IREIVQRGDVIVTKI S+HNI DPFTK L AKVFEGH+ESLGLRDMYIR
Sbjct: 348 IREIVQRGDVIVTKIASEHNIADPFTKILTAKVFEGHLESLGLRDMYIR 396

[Close]

BLAST of Cmc08g0227551 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 440.7 bits (1132), Expect = 8.0e-120
Identity = 216/229 (94.32%), Postives = 220/229 (96.07%), Query Frame = 0


Query: 1    MRRIPYASVVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTTIKIILKYLRRTRDYM 60
            MRRIPYAS VGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWT +KI+LKYLRRTRDYM
Sbjct: 1007 MRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIVLKYLRRTRDYM 1066

Query: 61   LVYGAKDLILTRYTDSDFQTDKDSRKSTSGSVFTLNDGAVVWRSIKQGCIADSTMEAEYV 120
            LVYGAKDLILT YTDSDFQTDKDSRKSTSGSVFTLN GAVVWRSIKQGCIADSTMEAEYV
Sbjct: 1067 LVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 1126

Query: 121  AACEAAKEAVWLRKFLHDLEVVPNMYLPITLYCDNSGAVANSKEPRSHKREKHIERKYHL 180
            AACEAAKEAVWLRKFLHDLEVVPNM LPITLYCDNSGAVANSKEPRSHKR KHIERKYHL
Sbjct: 1127 AACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL 1186

Query: 181  IREIVQRGDVIVTKITSQHNIDDPFTKTLMAKVFEGHIESLGLRDMYIR 230
            IREIVQRGDVIVTKI S+HNI DPFTKTL AKVFEGH+ESLGLRDMYIR
Sbjct: 1187 IREIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMYIR 1235

[Close]

BLAST of Cmc08g0227551 vs. NCBI nr
Match: KAA0059226.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 440.7 bits (1132), Expect = 8.0e-120
Identity = 216/229 (94.32%), Postives = 220/229 (96.07%), Query Frame = 0


Query: 1    MRRIPYASVVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTTIKIILKYLRRTRDYM 60
            MRRIPYAS VGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWT +KI+LKYLRRTRDYM
Sbjct: 881  MRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIVLKYLRRTRDYM 940

Query: 61   LVYGAKDLILTRYTDSDFQTDKDSRKSTSGSVFTLNDGAVVWRSIKQGCIADSTMEAEYV 120
            LVYGAKDLILT YTDSDFQTDKDSRKSTSGSVFTLN GAVVWRSIKQGCIADSTMEAEYV
Sbjct: 941  LVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 1000

Query: 121  AACEAAKEAVWLRKFLHDLEVVPNMYLPITLYCDNSGAVANSKEPRSHKREKHIERKYHL 180
            AACEAAKEAVWLRKFLHDLEVVPNM LPITLYCDNSGAVANSKEPRSHKR KHIERKYHL
Sbjct: 1001 AACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL 1060

Query: 181  IREIVQRGDVIVTKITSQHNIDDPFTKTLMAKVFEGHIESLGLRDMYIR 230
            IREIVQRGDVIVTKI S+HNI DPFTKTL AKVFEGH+ESLGLRDMYIR
Sbjct: 1061 IREIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMYIR 1109

[Close]

BLAST of Cmc08g0227551 vs. NCBI nr
Match: KAA0042496.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 439.5 bits (1129), Expect = 1.8e-119
Identity = 216/229 (94.32%), Postives = 219/229 (95.63%), Query Frame = 0


Query: 1   MRRIPYASVVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTTIKIILKYLRRTRDYM 60
           MRRIPYAS VGSLMY MLCTRPDICYAVGIVSRYQSNPGLDHWT +KIILKYLRRTRDYM
Sbjct: 72  MRRIPYASAVGSLMYVMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYM 131

Query: 61  LVYGAKDLILTRYTDSDFQTDKDSRKSTSGSVFTLNDGAVVWRSIKQGCIADSTMEAEYV 120
           LVYGAKDLILT YTDSDFQTDKDSRKSTSGSVFTLN GAVVWRSIKQGCIADSTMEAEYV
Sbjct: 132 LVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 191

Query: 121 AACEAAKEAVWLRKFLHDLEVVPNMYLPITLYCDNSGAVANSKEPRSHKREKHIERKYHL 180
           AACEAAKEAVWLRKFLHDLEVVPNM LPITLYCDNSGAVANSKEPRSHKR KHIERKYHL
Sbjct: 192 AACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL 251

Query: 181 IREIVQRGDVIVTKITSQHNIDDPFTKTLMAKVFEGHIESLGLRDMYIR 230
           IREIVQRGDVIVTKI S+HNI DPFTKTL AKVFEGH+ESLGLRDMYIR
Sbjct: 252 IREIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMYIR 300

[Close]

BLAST of Cmc08g0227551 vs. NCBI nr
Match: KAA0035907.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 434.9 bits (1117), Expect = 4.4e-118
Identity = 214/229 (93.45%), Postives = 219/229 (95.63%), Query Frame = 0


Query: 1    MRRIPYASVVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTTIKIILKYLRRTRDYM 60
            MRRIPYAS VGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWT +KIILKYLRRTRDYM
Sbjct: 1007 MRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYM 1066

Query: 61   LVYGAKDLILTRYTDSDFQTDKDSRKSTSGSVFTLNDGAVVWRSIKQGCIADSTMEAEYV 120
            LVYGAKDLILT YT+SDFQTDKDSRKSTS SVFTLN GAVVWRSIKQGCIADSTMEAEYV
Sbjct: 1067 LVYGAKDLILTGYTNSDFQTDKDSRKSTSRSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 1126

Query: 121  AACEAAKEAVWLRKFLHDLEVVPNMYLPITLYCDNSGAVANSKEPRSHKREKHIERKYHL 180
            AACEAAKEAVWL+KFLHDLEVVPNM LPITLYCDNSGAVANSKEPRSHKR KHIERKYHL
Sbjct: 1127 AACEAAKEAVWLKKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL 1186

Query: 181  IREIVQRGDVIVTKITSQHNIDDPFTKTLMAKVFEGHIESLGLRDMYIR 230
            IREIVQRGDVIVTKI S+HNI DPFTKTL AKVFEGH+ESLGLRDMYIR
Sbjct: 1187 IREIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMYIR 1235

[Close]

BLAST of Cmc08g0227551 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 4.3e-52
Identity = 105/223 (47.09%), Postives = 144/223 (64.57%), Query Frame = 0


Query: 1    MRRIPYASVVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTTIKIILKYLRRTRDYM 60
            M ++PY+S VGSLMYAM+CTRPDI +AVG+VSR+  NPG +HW  +K IL+YLR T    
Sbjct: 1106 MAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDC 1165

Query: 61   LVYGAKDLILTRYTDSDFQTDKDSRKSTSGSVFTLNDGAVVWRSIKQGCIADSTMEAEYV 120
            L +G  D IL  YTD+D   D D+RKS++G +FT + GA+ W+S  Q C+A ST EAEY+
Sbjct: 1166 LCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYI 1225

Query: 121  AACEAAKEAVWLRKFLHDLEVVPNMYLPITLYCDNSGAVANSKEPRSHKREKHIERKYHL 180
            AA E  KE +WL++FL +L +    Y+   +YCD+  A+  SK    H R KHI+ +YH 
Sbjct: 1226 AATETGKEMIWLKRFLQELGLHQKEYV---VYCDSQSAIDLSKNSMYHARTKHIDVRYHW 1285

Query: 181  IREIVQRGDVIVTKITSQHNIDDPFTKTLMAKVFEGHIESLGL 224
            IRE+V    + V KI++  N  D  TK +    FE   E +G+
Sbjct: 1286 IREMVDDESLKVLKISTNENPADMLTKVVPRNKFELCKELVGM 1325

[Close]

BLAST of Cmc08g0227551 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 154.5 bits (389), Expect = 1.5e-36
Identity = 87/223 (39.01%), Postives = 129/223 (57.85%), Query Frame = 0


Query: 5    PYASVVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTTIKIILKYLRRTRDYMLVYG 64
            P  S++G LMY MLCTRPD+  AV I+SRY S    + W  +K +L+YL+ T D  L++ 
Sbjct: 1180 PCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFK 1239

Query: 65   ---AKDLILTRYTDSDFQTDKDSRKSTSGSVFTLND-GAVVWRSIKQGCIADSTMEAEYV 124
               A +  +  Y DSD+   +  RKST+G +F + D   + W + +Q  +A S+ EAEY+
Sbjct: 1240 KNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYM 1299

Query: 125  AACEAAKEAVWLRKFLHDLEVVPNMYLPITLYCDNSGAVANSKEPRSHKREKHIERKYHL 184
            A  EA +EA+WL+  L  + +   +  PI +Y DN G ++ +  P  HKR KHI+ KYH 
Sbjct: 1300 ALFEAVREALWLKFLLTSINI--KLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHF 1359

Query: 185  IREIVQRGDVIVTKITSQHNIDDPFTKTLMAKVFEGHIESLGL 224
             RE VQ   + +  I +++ + D FTK L A  F    + LGL
Sbjct: 1360 AREQVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGL 1400

[Close]

BLAST of Cmc08g0227551 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 3.0e-29
Identity = 76/219 (34.70%), Postives = 110/219 (50.23%), Query Frame = 0


Query: 6    YASVVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTTIKIILKYLRRTRDY-MLVYG 65
            Y  +VGSL Y +  TRPD+ YAV  +S+Y   P  DHW  +K +L+YL  T D+ + +  
Sbjct: 1228 YRGIVGSLQY-LAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKK 1287

Query: 66   AKDLILTRYTDSDFQTDKDSRKSTSGSVFTLNDGAVVWRSIKQGCIADSTMEAEYVAACE 125
               L L  Y+D+D+  D D   ST+G +  L    + W S KQ  +  S+ EAEY +   
Sbjct: 1288 GNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVAN 1347

Query: 126  AAKEAVWLRKFLHDLEVVPNMYLPITLYCDNSGAVANSKEPRSHKREKHIERKYHLIREI 185
             + E  W+   L +L +   +  P  +YCDN GA      P  H R KHI   YH IR  
Sbjct: 1348 TSSELQWICSLLTELGI--QLSHPPVIYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQ 1407

Query: 186  VQRGDVIVTKITSQHNIDDPFTKTLMAKVFEGHIESLGL 224
            VQ G + V  +++   + D  TK L    F+     +G+
Sbjct: 1408 VQSGALRVVHVSTHDQLADTLTKPLSRVAFQNFSRKIGV 1443

[Close]

BLAST of Cmc08g0227551 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.7e-27
Identity = 75/219 (34.25%), Postives = 110/219 (50.23%), Query Frame = 0


Query: 6    YASVVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTTIKIILKYLRRTRDY-MLVYG 65
            Y  +VGSL Y +  TRPDI YAV  +S++   P  +H   +K IL+YL  T ++ + +  
Sbjct: 1245 YRGIVGSLQY-LAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKK 1304

Query: 66   AKDLILTRYTDSDFQTDKDSRKSTSGSVFTLNDGAVVWRSIKQGCIADSTMEAEYVAACE 125
               L L  Y+D+D+  DKD   ST+G +  L    + W S KQ  +  S+ EAEY +   
Sbjct: 1305 GNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVAN 1364

Query: 126  AAKEAVWLRKFLHDLEVVPNMYLPITLYCDNSGAVANSKEPRSHKREKHIERKYHLIREI 185
             + E  W+   L +L +   +  P  +YCDN GA      P  H R KHI   YH IR  
Sbjct: 1365 TSSEMQWICSLLTELGI--RLTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQ 1424

Query: 186  VQRGDVIVTKITSQHNIDDPFTKTLMAKVFEGHIESLGL 224
            VQ G + V  +++   + D  TK L    F+     +G+
Sbjct: 1425 VQSGALRVVHVSTHDQLADTLTKPLSRTAFQNFASKIGV 1460

[Close]

BLAST of Cmc08g0227551 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.8e-27
Identity = 63/133 (47.37%), Postives = 90/133 (67.67%), Query Frame = 0


Query: 1   MRRIPYASVVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTTIKIILKYLRRTRDYM 60
           M+ +PY S VG++MY M+ TRPD+  AVG++S++ S+P   HW  +K +L+YL+ T+ Y 
Sbjct: 1   MKNVPYLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYG 60

Query: 61  LVY-GAKDLILTRYTDSDFQTDKDSRKSTSGSVFTLNDGAVVWRSIKQGCIADSTMEAEY 120
           L +  A    L  Y+D+D+  D +SR+STSG +F LN G V WRS KQ  +A S+ E EY
Sbjct: 61  LEFTRAGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEY 120

Query: 121 VAACEAAKEAVWL 133
           +A  EA +EAVWL
Sbjct: 121 MALSEATQEAVWL 133

[Close]

BLAST of Cmc08g0227551 vs. ExPASy TrEMBL
Match: A0A5A7V1F5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G00440 PE=4 SV=1)

HSP 1 Score: 441.8 bits (1135), Expect = 1.7e-120
Identity = 217/229 (94.76%), Postives = 221/229 (96.51%), Query Frame = 0


Query: 1   MRRIPYASVVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTTIKIILKYLRRTRDYM 60
           MRRIPYAS VGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTT+KIILKYLRRTRDYM
Sbjct: 168 MRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTTVKIILKYLRRTRDYM 227

Query: 61  LVYGAKDLILTRYTDSDFQTDKDSRKSTSGSVFTLNDGAVVWRSIKQGCIADSTMEAEYV 120
           LVYGAKDLILT YTDSDFQTDKDSRKSTSGSVFTLN+GAVVWRSIKQGCIADSTMEAEYV
Sbjct: 228 LVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNEGAVVWRSIKQGCIADSTMEAEYV 287

Query: 121 AACEAAKEAVWLRKFLHDLEVVPNMYLPITLYCDNSGAVANSKEPRSHKREKHIERKYHL 180
           AACEAAKEAVWLRKFLHDLEVVPNM LPITLYCDNSGAVANSKEPRSHKR KHIERKYHL
Sbjct: 288 AACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL 347

Query: 181 IREIVQRGDVIVTKITSQHNIDDPFTKTLMAKVFEGHIESLGLRDMYIR 230
           IREIVQRGDVIVTKI S+HNI DPFTK L AKVFEGH+ESLGLRDMYIR
Sbjct: 348 IREIVQRGDVIVTKIASEHNIADPFTKILTAKVFEGHLESLGLRDMYIR 396

[Close]

BLAST of Cmc08g0227551 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 440.7 bits (1132), Expect = 3.9e-120
Identity = 216/229 (94.32%), Postives = 220/229 (96.07%), Query Frame = 0


Query: 1    MRRIPYASVVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTTIKIILKYLRRTRDYM 60
            MRRIPYAS VGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWT +KI+LKYLRRTRDYM
Sbjct: 1007 MRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIVLKYLRRTRDYM 1066

Query: 61   LVYGAKDLILTRYTDSDFQTDKDSRKSTSGSVFTLNDGAVVWRSIKQGCIADSTMEAEYV 120
            LVYGAKDLILT YTDSDFQTDKDSRKSTSGSVFTLN GAVVWRSIKQGCIADSTMEAEYV
Sbjct: 1067 LVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 1126

Query: 121  AACEAAKEAVWLRKFLHDLEVVPNMYLPITLYCDNSGAVANSKEPRSHKREKHIERKYHL 180
            AACEAAKEAVWLRKFLHDLEVVPNM LPITLYCDNSGAVANSKEPRSHKR KHIERKYHL
Sbjct: 1127 AACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL 1186

Query: 181  IREIVQRGDVIVTKITSQHNIDDPFTKTLMAKVFEGHIESLGLRDMYIR 230
            IREIVQRGDVIVTKI S+HNI DPFTKTL AKVFEGH+ESLGLRDMYIR
Sbjct: 1187 IREIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMYIR 1235

[Close]

BLAST of Cmc08g0227551 vs. ExPASy TrEMBL
Match: A0A5A7UYE8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001570 PE=4 SV=1)

HSP 1 Score: 440.7 bits (1132), Expect = 3.9e-120
Identity = 216/229 (94.32%), Postives = 220/229 (96.07%), Query Frame = 0


Query: 1    MRRIPYASVVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTTIKIILKYLRRTRDYM 60
            MRRIPYAS VGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWT +KI+LKYLRRTRDYM
Sbjct: 881  MRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIVLKYLRRTRDYM 940

Query: 61   LVYGAKDLILTRYTDSDFQTDKDSRKSTSGSVFTLNDGAVVWRSIKQGCIADSTMEAEYV 120
            LVYGAKDLILT YTDSDFQTDKDSRKSTSGSVFTLN GAVVWRSIKQGCIADSTMEAEYV
Sbjct: 941  LVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 1000

Query: 121  AACEAAKEAVWLRKFLHDLEVVPNMYLPITLYCDNSGAVANSKEPRSHKREKHIERKYHL 180
            AACEAAKEAVWLRKFLHDLEVVPNM LPITLYCDNSGAVANSKEPRSHKR KHIERKYHL
Sbjct: 1001 AACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL 1060

Query: 181  IREIVQRGDVIVTKITSQHNIDDPFTKTLMAKVFEGHIESLGLRDMYIR 230
            IREIVQRGDVIVTKI S+HNI DPFTKTL AKVFEGH+ESLGLRDMYIR
Sbjct: 1061 IREIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMYIR 1109

[Close]

BLAST of Cmc08g0227551 vs. ExPASy TrEMBL
Match: A0A5A7TKM4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G00470 PE=4 SV=1)

HSP 1 Score: 439.5 bits (1129), Expect = 8.6e-120
Identity = 216/229 (94.32%), Postives = 219/229 (95.63%), Query Frame = 0


Query: 1   MRRIPYASVVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTTIKIILKYLRRTRDYM 60
           MRRIPYAS VGSLMY MLCTRPDICYAVGIVSRYQSNPGLDHWT +KIILKYLRRTRDYM
Sbjct: 72  MRRIPYASAVGSLMYVMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYM 131

Query: 61  LVYGAKDLILTRYTDSDFQTDKDSRKSTSGSVFTLNDGAVVWRSIKQGCIADSTMEAEYV 120
           LVYGAKDLILT YTDSDFQTDKDSRKSTSGSVFTLN GAVVWRSIKQGCIADSTMEAEYV
Sbjct: 132 LVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 191

Query: 121 AACEAAKEAVWLRKFLHDLEVVPNMYLPITLYCDNSGAVANSKEPRSHKREKHIERKYHL 180
           AACEAAKEAVWLRKFLHDLEVVPNM LPITLYCDNSGAVANSKEPRSHKR KHIERKYHL
Sbjct: 192 AACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL 251

Query: 181 IREIVQRGDVIVTKITSQHNIDDPFTKTLMAKVFEGHIESLGLRDMYIR 230
           IREIVQRGDVIVTKI S+HNI DPFTKTL AKVFEGH+ESLGLRDMYIR
Sbjct: 252 IREIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMYIR 300

[Close]

BLAST of Cmc08g0227551 vs. ExPASy TrEMBL
Match: A0A5A7T2V9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760 PE=4 SV=1)

HSP 1 Score: 434.9 bits (1117), Expect = 2.1e-118
Identity = 214/229 (93.45%), Postives = 219/229 (95.63%), Query Frame = 0


Query: 1    MRRIPYASVVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTTIKIILKYLRRTRDYM 60
            MRRIPYAS VGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWT +KIILKYLRRTRDYM
Sbjct: 1007 MRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYM 1066

Query: 61   LVYGAKDLILTRYTDSDFQTDKDSRKSTSGSVFTLNDGAVVWRSIKQGCIADSTMEAEYV 120
            LVYGAKDLILT YT+SDFQTDKDSRKSTS SVFTLN GAVVWRSIKQGCIADSTMEAEYV
Sbjct: 1067 LVYGAKDLILTGYTNSDFQTDKDSRKSTSRSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 1126

Query: 121  AACEAAKEAVWLRKFLHDLEVVPNMYLPITLYCDNSGAVANSKEPRSHKREKHIERKYHL 180
            AACEAAKEAVWL+KFLHDLEVVPNM LPITLYCDNSGAVANSKEPRSHKR KHIERKYHL
Sbjct: 1127 AACEAAKEAVWLKKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL 1186

Query: 181  IREIVQRGDVIVTKITSQHNIDDPFTKTLMAKVFEGHIESLGLRDMYIR 230
            IREIVQRGDVIVTKI S+HNI DPFTKTL AKVFEGH+ESLGLRDMYIR
Sbjct: 1187 IREIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMYIR 1235

[Close]

BLAST of Cmc08g0227551 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 108.6 bits (270), Expect = 6.7e-24
Identity = 63/179 (35.20%), Postives = 101/179 (56.42%), Query Frame = 0


Query: 6   YASVVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTTIKIILKYLRRTRDYMLVYGA 65
           Y  ++G LMY  + TR DI +AV  +S++   P L H   +  IL Y++ T    L Y +
Sbjct: 378 YRRLIGRLMYLQI-TRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSS 437

Query: 66  K-DLILTRYTDSDFQTDKDSRKSTSGSVFTLNDGAVVWRSIKQGCIADSTMEAEYVAACE 125
           + ++ L  ++D+ FQ+ KD+R+ST+G    L    + W+S KQ  ++ S+ EAEY A   
Sbjct: 438 QAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSF 497

Query: 126 AAKEAVWLRKFLHDLEVVPNMYLPITLYCDNSGAVANSKEPRSHKREKHIERKYHLIRE 184
           A  E +WL +F  +L++   +  P  L+CDN+ A+  +     H+R KHIE   H +RE
Sbjct: 498 ATDEMMWLAQFFRELQL--PLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRE 553

[Close]

BLAST of Cmc08g0227551 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 66.2 bits (160), Expect = 3.8e-11
Identity = 41/127 (32.28%), Postives = 67/127 (52.76%), Query Frame = 0


Query: 6   YASVVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTTIKIILKYLRRTRDY-MLVYG 65
           + S+VG+L Y  L TRPDI YAV IV +    P L  +  +K +L+Y++ T  + + ++ 
Sbjct: 100 FRSIVGALQYLTL-TRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHK 159

Query: 66  AKDLILTRYTDSDFQTDKDSRKSTSGSVFTLNDGAVVWRSIKQGCIADSTMEAEYVAACE 125
              L +  + DSD+     +R+ST+G    L    + W + +Q  ++ S+ E EY A   
Sbjct: 160 NSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALAL 219

Query: 126 AAKEAVW 132
            A E  W
Sbjct: 220 TAAELTW 225

The following BLAST results are available for this feature:

BLAST of Cmc08g0227551 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0061170.1	3.6e-120	94.76	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0025945.1	8.0e-120	94.32	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]
KAA0059226.1	8.0e-120	94.32	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0042496.1	1.8e-119	94.32	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0035907.1	4.4e-118	93.45	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc08g0227551 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	4.3e-52	47.09	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.5e-36	39.01	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	3.0e-29	34.70	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.7e-27	34.25	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P0CV72	2.8e-27	47.37	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]

BLAST of Cmc08g0227551 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V1F5	1.7e-120	94.76	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G0044...	[more]
A0A5A7TZD0	3.9e-120	94.32	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5A7UYE8	3.9e-120	94.32	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G0015...	[more]
A0A5A7TKM4	8.6e-120	94.32	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G0047...	[more]
A0A5A7T2V9	2.1e-118	93.45	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760...	[more]

BLAST of Cmc08g0227551 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	6.7e-24	35.20	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	3.8e-11	32.28	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439:SF273	RIBOSOME BIOGENESIS PROTEIN BOP1 HOMOLOG	coord: 86..186
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 86..186
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 73..209 e-value: 1.16074E-65 score: 197.691

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0227551.1	Cmc08g0227551.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding