Cmc08g0227541 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0227541
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr08: 20700710 .. 20702197 (+)
RNA-Seq Expression	Cmc08g0227541
Synteny	Cmc08g0227541

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACACTCAAGGTTGGAACGGGAGATGTCATTTCAGCTCGTGCAGTGGGAGATGCTAAGTTGTTTTTCGGAAATAAATTCATGTTTTTGGAAAACTTGTATATAGTTCCTAAAATTAAAAGGAACTTAGTTTCCGTTTCTTGTCTTATTGAACATATGTACTCAATTAATTTTTCTATGAATGAAGCGTTCATTTCTAAGAATGGTGTACATATTTGTTCGGCTAAGCTTGGAAACAACTTGTATGTATTAAGACCTAATGAAGCAAAAGCAGTTTTAAATCATGAGATGTTTAGAACTGCTAATACTCAAAATAAAAGGCAAGGAATTTCTCCAAATAACAATAGCTATCTTCGGCATTTAAGATTAGGTCACATAAATCTTGATCGGATCGTGAGATTGGTAAAGAATGGACTTATAAACAAGTTAGAAGATGATTCATTACCTCCATGTGAATCTTGTCTTGAAGGAAAAATGACAAAGAGACCTTTTGCTGGAAAAGGTTATAGAGCCAAAGAGCCTTTAGAACTTATACATTCAGACCTTTGTGGTCCGATGAATGTAAAAGCTAGAGGGGGTTTTGAATACTTCATCTCTTTTATAGATGATTATTCAAGGTATGGTTATTTATACTTAATGGAGCATAAGTCTGAAGCTCTTGAAAAGTTCAAGGAGTATAAGGCTGAAGTTGAAAATTTATTAAGTAAAAAGATTAAAATACTTCGATCTGATCGAGGTGAAGAGTACATGGATTTGAGATTCCAGGACTATATGATAGAACATGGAATCCAATCCCAACTCTCAGCACCTGGTACACCTCAACAAAATGGTGTAACAGAAAGGAGAAATAGAACCTTGTTAGACATGGTTCGTTCAATGATGAGTTACGCTCAATTGCCTAGCTCGTTTTGGGGGTATGCAGTAGAGACTGCAGTTCATATCTTGAACAATGTTCCCTTGAAGAGTGTTTCTGAAACAACTTTCGAGTTATGGCGAGGACGTAAACCTAGTTTAAGTCATTTCAGAATTTGGGGTTGTCCAGCACATGTGTTAGTGACAAATCCCAAGAAGTTGGAACCTCATTCAAGGTTATGCCAATTTGTTGGTTACCCTAAAGAGACGAGAGGTGGTCTATTCTTCGATCCACAAGAAAATAGAGTGTTTGTATCGACAAATGCTACTTTCTTGGAAGAAAACCACATGAGAGATCATAAACCACGAAGCAAATTAGTATTAAATGAAGCTACTGATGAATCAACAAGGGTTATTGATGAAGTTGGTCCCTCATCAAGAATTGATGAAACCACCACATCAGGTCAATCTCATCCTTCTCAATCGTTGAGAATCCCTCGACGCAGTGGGAGGATTGTATCACAACCTAACCGTTATTTGAGTTTAACTGAAACTCAGGTTGTCATACCAGATGATGTTGTTGAGGATCCATTGTCCTATAAACAGGCAATGAATGATGTAGATAAGGACCAATAG

mRNA sequence

ATGACACTCAAGGTTGGAACGGGAGATGTCATTTCAGCTCGTGCAGTGGGAGATGCTAAGTTGTTTTTCGGAAATAAATTCATGTTTTTGGAAAACTTGTATATAGTTCCTAAAATTAAAAGGAACTTAGTTTCCGTTTCTTGTCTTATTGAACATATGTACTCAATTAATTTTTCTATGAATGAAGCGTTCATTTCTAAGAATGGTGTACATATTTGTTCGGCTAAGCTTGGAAACAACTTGTATGTATTAAGACCTAATGAAGCAAAAGCAGTTTTAAATCATGAGATGTTTAGAACTGCTAATACTCAAAATAAAAGGCAAGGAATTTCTCCAAATAACAATAGCTATCTTCGGCATTTAAGATTAGGTCACATAAATCTTGATCGGATCGTGAGATTGGTAAAGAATGGACTTATAAACAAGTTAGAAGATGATTCATTACCTCCATGTGAATCTTGTCTTGAAGGAAAAATGACAAAGAGACCTTTTGCTGGAAAAGGTTATAGAGCCAAAGAGCCTTTAGAACTTATACATTCAGACCTTTGTGGTCCGATGAATGTAAAAGCTAGAGGGGGTTTTGAATACTTCATCTCTTTTATAGATGATTATTCAAGGTATGGTTATTTATACTTAATGGAGCATAAGTCTGAAGCTCTTGAAAAGTTCAAGGAGTATAAGGCTGAAGTTGAAAATTTATTAAGTAAAAAGATTAAAATACTTCGATCTGATCGAGGTGAAGAGTACATGGATTTGAGATTCCAGGACTATATGATAGAACATGGAATCCAATCCCAACTCTCAGCACCTGGTACACCTCAACAAAATGGTGTAACAGAAAGGAGAAATAGAACCTTGTTAGACATGGTTCGTTCAATGATGAGTTACGCTCAATTGCCTAGCTCGTTTTGGGGGTATGCAGTAGAGACTGCAGTTCATATCTTGAACAATGTTCCCTTGAAGAGTGTTTCTGAAACAACTTTCGAGTTATGGCGAGGACGTAAACCTAGTTTAAGTCATTTCAGAATTTGGGGTTGTCCAGCACATGTGTTAGTGACAAATCCCAAGAAGTTGGAACCTCATTCAAGGTTATGCCAATTTGTTGGTTACCCTAAAGAGACGAGAGGTGGTCTATTCTTCGATCCACAAGAAAATAGAGTGTTTGTATCGACAAATGCTACTTTCTTGGAAGAAAACCACATGAGAGATCATAAACCACGAAGCAAATTAGTATTAAATGAAGCTACTGATGAATCAACAAGGGTTATTGATGAAGTTGGTCCCTCATCAAGAATTGATGAAACCACCACATCAGGTCAATCTCATCCTTCTCAATCGTTGAGAATCCCTCGACGCAGTGGGAGGATTGTATCACAACCTAACCGTTATTTGAGTTTAACTGAAACTCAGGTTGTCATACCAGATGATGTTGTTGAGGATCCATTGTCCTATAAACAGGCAATGAATGATGTAGATAAGGACCAATAG

Coding sequence (CDS)

ATGACACTCAAGGTTGGAACGGGAGATGTCATTTCAGCTCGTGCAGTGGGAGATGCTAAGTTGTTTTTCGGAAATAAATTCATGTTTTTGGAAAACTTGTATATAGTTCCTAAAATTAAAAGGAACTTAGTTTCCGTTTCTTGTCTTATTGAACATATGTACTCAATTAATTTTTCTATGAATGAAGCGTTCATTTCTAAGAATGGTGTACATATTTGTTCGGCTAAGCTTGGAAACAACTTGTATGTATTAAGACCTAATGAAGCAAAAGCAGTTTTAAATCATGAGATGTTTAGAACTGCTAATACTCAAAATAAAAGGCAAGGAATTTCTCCAAATAACAATAGCTATCTTCGGCATTTAAGATTAGGTCACATAAATCTTGATCGGATCGTGAGATTGGTAAAGAATGGACTTATAAACAAGTTAGAAGATGATTCATTACCTCCATGTGAATCTTGTCTTGAAGGAAAAATGACAAAGAGACCTTTTGCTGGAAAAGGTTATAGAGCCAAAGAGCCTTTAGAACTTATACATTCAGACCTTTGTGGTCCGATGAATGTAAAAGCTAGAGGGGGTTTTGAATACTTCATCTCTTTTATAGATGATTATTCAAGGTATGGTTATTTATACTTAATGGAGCATAAGTCTGAAGCTCTTGAAAAGTTCAAGGAGTATAAGGCTGAAGTTGAAAATTTATTAAGTAAAAAGATTAAAATACTTCGATCTGATCGAGGTGAAGAGTACATGGATTTGAGATTCCAGGACTATATGATAGAACATGGAATCCAATCCCAACTCTCAGCACCTGGTACACCTCAACAAAATGGTGTAACAGAAAGGAGAAATAGAACCTTGTTAGACATGGTTCGTTCAATGATGAGTTACGCTCAATTGCCTAGCTCGTTTTGGGGGTATGCAGTAGAGACTGCAGTTCATATCTTGAACAATGTTCCCTTGAAGAGTGTTTCTGAAACAACTTTCGAGTTATGGCGAGGACGTAAACCTAGTTTAAGTCATTTCAGAATTTGGGGTTGTCCAGCACATGTGTTAGTGACAAATCCCAAGAAGTTGGAACCTCATTCAAGGTTATGCCAATTTGTTGGTTACCCTAAAGAGACGAGAGGTGGTCTATTCTTCGATCCACAAGAAAATAGAGTGTTTGTATCGACAAATGCTACTTTCTTGGAAGAAAACCACATGAGAGATCATAAACCACGAAGCAAATTAGTATTAAATGAAGCTACTGATGAATCAACAAGGGTTATTGATGAAGTTGGTCCCTCATCAAGAATTGATGAAACCACCACATCAGGTCAATCTCATCCTTCTCAATCGTTGAGAATCCCTCGACGCAGTGGGAGGATTGTATCACAACCTAACCGTTATTTGAGTTTAACTGAAACTCAGGTTGTCATACCAGATGATGTTGTTGAGGATCCATTGTCCTATAAACAGGCAATGAATGATGTAGATAAGGACCAATAG

Protein sequence

MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLGNNLYVLRPNEAKAVLNHEMFRTANTQNKRQGISPNNNSYLRHLRLGHINLDRIVRLVKNGLINKLEDDSLPPCESCLEGKMTKRPFAGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKILRSDRGEEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVTERRNRTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPLKSVSETTFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEPHSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEENHMRDHKPRSKLVLNEATDESTRVIDEVGPSSRIDETTTSGQSHPSQSLRIPRRSGRIVSQPNRYLSLTETQVVIPDDVVEDPLSYKQAMNDVDKDQ

Homology

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BLAST of Cmc08g0227541 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 949.9 bits (2454), Expect = 8.7e-273
Identity = 470/495 (94.95%), Postives = 481/495 (97.17%), Query Frame = 0


Query: 1   MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
           MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM
Sbjct: 233 MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 292

Query: 61  NEAFISKNGVHICSAKLGNNLYVLRPNEAKAVLNHEMFRTANTQNKRQGISPNNNSYLRH 120
           NEAFI KNGVHICSAKL NNLYVLRPNEAKAVLNHEMFRTANTQNKRQ ISPNNN+YL H
Sbjct: 293 NEAFIYKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH 352

Query: 121 LRLGHINLDRIVRLVKNGLINKLEDDSLPPCESCLEGKMTKRPFAGKGYRAKEPLELIHS 180
           LRLGHINLDRI RLVKNGL+NKL+D SLPPCESCLEGKMTKRPF GKGYRAKEPLELIHS
Sbjct: 353 LRLGHINLDRIGRLVKNGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 412

Query: 181 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKI 240
           DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYK EVENLLSKKIKI
Sbjct: 413 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI 472

Query: 241 LRSDRGEEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVTERRNRTLLDMVRSMMSYAQLP 300
           LRSDRG EYMDLRFQDYMIEHGIQSQLSAPGTPQQNGV+ERRNRTLLDMVRSMMSYAQLP
Sbjct: 473 LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLP 532

Query: 301 SSFWGYAVETAVHILNNVPLKSVSETTFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEP 360
           SSFWGYAVETAVHILNNVP KSVSET FELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEP
Sbjct: 533 SSFWGYAVETAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEP 592

Query: 361 HSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEENHMRDHKPRSKLVLNEATDEST 420
            SRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEE+HMR+HKPRSKLVL+EATDEST
Sbjct: 593 RSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDEST 652

Query: 421 RVIDEVGPSSRIDETTTSGQSHPSQSLRIPRRSGRIVSQPNRYLSLTETQVVIPDDVVED 480
           RV+DEVGPSSR+DETTTSGQSHPSQSLR+PRRSGR+VSQPNRYL LTETQVVIPDD VED
Sbjct: 653 RVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVED 712

Query: 481 PLSYKQAMNDVDKDQ 496
           PLSYKQAMNDVDKDQ
Sbjct: 713 PLSYKQAMNDVDKDQ 727

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BLAST of Cmc08g0227541 vs. NCBI nr
Match: KAA0035907.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 939.5 bits (2427), Expect = 1.2e-269
Identity = 465/495 (93.94%), Postives = 478/495 (96.57%), Query Frame = 0


Query: 1   MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
           MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM
Sbjct: 233 MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 292

Query: 61  NEAFISKNGVHICSAKLGNNLYVLRPNEAKAVLNHEMFRTANTQNKRQGISPNNNSYLRH 120
           NEAFI KNGVHICSAKL NNLYVLRPNEAKAVLNHEMFRTANTQNKRQ ISPNNN+YL H
Sbjct: 293 NEAFIYKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH 352

Query: 121 LRLGHINLDRIVRLVKNGLINKLEDDSLPPCESCLEGKMTKRPFAGKGYRAKEPLELIHS 180
           LRLGHINLDRI RLVK+GL+NKL+D SLPPCESCLEGKMTKRPF GKGYRAKEPLELIHS
Sbjct: 353 LRLGHINLDRIGRLVKDGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 412

Query: 181 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKI 240
           DLCGPMNVKARG FEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYK EVENLLSKKIKI
Sbjct: 413 DLCGPMNVKARGSFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI 472

Query: 241 LRSDRGEEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVTERRNRTLLDMVRSMMSYAQLP 300
            RSDRG EYMDL FQDYMIEHGIQSQLSAPGTPQQNGV+ERRNRTLLDMVRSMMSYAQLP
Sbjct: 473 FRSDRGGEYMDLIFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLP 532

Query: 301 SSFWGYAVETAVHILNNVPLKSVSETTFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEP 360
           SSFWGYAVETAVHILNNVP KSVSET FELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEP
Sbjct: 533 SSFWGYAVETAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEP 592

Query: 361 HSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEENHMRDHKPRSKLVLNEATDEST 420
            SRLCQFVGYPKETRGGLFFDP+ENRVFVSTNATFLEE+HMR+HKPRSKLVL+EATDEST
Sbjct: 593 RSRLCQFVGYPKETRGGLFFDPKENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDEST 652

Query: 421 RVIDEVGPSSRIDETTTSGQSHPSQSLRIPRRSGRIVSQPNRYLSLTETQVVIPDDVVED 480
           RV+DEVGPSSR+DETTTSGQSHPSQSLR+PRRSGR+VSQPNRYL LTETQVVIPDD VED
Sbjct: 653 RVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVED 712

Query: 481 PLSYKQAMNDVDKDQ 496
           PLSYKQAMNDVDKDQ
Sbjct: 713 PLSYKQAMNDVDKDQ 727

[Close]

BLAST of Cmc08g0227541 vs. NCBI nr
Match: KAA0060534.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK00774.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 887.9 bits (2293), Expect = 4.1e-254
Identity = 440/485 (90.72%), Postives = 454/485 (93.61%), Query Frame = 0


Query: 1   MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
           M LKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSI+FSM
Sbjct: 205 MILKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSISFSM 264

Query: 61  NEAFISKNGVHICSAKLGNNLYVLRPNEAKAVLNHEMFRTANTQNKRQGISPNNNSYLRH 120
           NEAFISKNGVHICS KL +NLYVL+PNE KAVLNHEMFRTANTQNKRQ IS NNN+YL H
Sbjct: 265 NEAFISKNGVHICSVKLEDNLYVLKPNEGKAVLNHEMFRTANTQNKRQRISSNNNTYLWH 324

Query: 121 LRLGHINLDRIVRLVKNGLINKLEDDSLPPCESCLEGKMTKRPFAGKGYRAKEPLELIHS 180
           LRLGHINLDRI RLVKNGL+NKLEDDSLPPCESCLEGKMTKRPF GKGYRAKEPLELIHS
Sbjct: 325 LRLGHINLDRIGRLVKNGLLNKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 384

Query: 181 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKI 240
           DLCGPMNVKA GGFEYFISFIDDYS YGYLYL+EHKSEALEKFKEYK EVENLLSKKIKI
Sbjct: 385 DLCGPMNVKAIGGFEYFISFIDDYSMYGYLYLIEHKSEALEKFKEYKTEVENLLSKKIKI 444

Query: 241 LRSDRGEEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVTERRNRTLLDMVRSMMSYAQLP 300
           LRSDRG EYMDLRFQDYMIEHGIQSQLSAPGTPQQNGV+ERRNRTLLDMV SMMSY QLP
Sbjct: 445 LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVHSMMSYVQLP 504

Query: 301 SSFWGYAVETAVHILNNVPLKSVSETTFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEP 360
           SSFWGYAVETAVHILNNVP K+V ET FELWRGRKPSLSHFRIW CP HVLVTNPKKLEP
Sbjct: 505 SSFWGYAVETAVHILNNVPSKNVFETPFELWRGRKPSLSHFRIWVCPVHVLVTNPKKLEP 564

Query: 361 HSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEENHMRDHKPRSKLVLNEATDEST 420
            SRLCQFVGYPKETRGGLFFDPQENRVFVSTNATF EE+HMRDHKPR KLVL+EATDEST
Sbjct: 565 RSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFFEEDHMRDHKPRRKLVLSEATDEST 624

Query: 421 RVIDEVGPSSRIDETTTSGQSHPSQSLRIPRRSGRIVSQPNRYLSLTETQVVIPDDVVED 480
           RV+DEVGPSSR+DETTTSGQSHPSQSLR+PRRSGR +SQ  RYL LTET VVIPD  VED
Sbjct: 625 RVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRGLSQSKRYLGLTETHVVIPDVGVED 684

Query: 481 PLSYK 486
           PL YK
Sbjct: 685 PLFYK 689

[Close]

BLAST of Cmc08g0227541 vs. NCBI nr
Match: KAA0067938.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 781.6 bits (2017), Expect = 4.1e-222
Identity = 407/495 (82.22%), Postives = 417/495 (84.24%), Query Frame = 0


Query: 1   MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
           MTL VGTGDVISARAVGD KLFFG KFMFLENLYIVPKIKRNLV VSCLIEHMYSINFSM
Sbjct: 208 MTLMVGTGDVISARAVGDVKLFFGIKFMFLENLYIVPKIKRNLVFVSCLIEHMYSINFSM 267

Query: 61  NEAFISKNGVHICSAKLGNNLYVLRPNEAKAVLNHEMFRTANTQNKRQGISPNNNSYLRH 120
           NEAFISKNG     AKL +NLYVLRPNEAKAVLNHEMFRTANTQNKRQ ISPNNN+YL H
Sbjct: 268 NEAFISKNG-----AKLEDNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH 327

Query: 121 LRLGHINLDRIVRLVKNGLINKLEDDSLPPCESCLEGKMTKRPFAGKGYRAKEPLELIHS 180
           LRL HINLDRI RLVKNGL+NKL+DDSLPPCESCLEGKMTKRPF GK YRAKEPLELIHS
Sbjct: 328 LRLDHINLDRIGRLVKNGLLNKLKDDSLPPCESCLEGKMTKRPFTGKDYRAKEPLELIHS 387

Query: 181 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKI 240
           DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHK EALEKFKEYK EVENLLSKKIKI
Sbjct: 388 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKYEALEKFKEYKTEVENLLSKKIKI 447

Query: 241 LRSDRGEEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVTERRNRTLLDMVRSMMSYAQLP 300
           LRSDRG EYMDLRFQDYMIEHGIQSQLSAPGTPQQNGV+ERRNRTLLDMVRSMMSYAQLP
Sbjct: 448 LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLP 507

Query: 301 SSFWGYAVETAVHILNNVPLKSVSETTFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEP 360
           SSFWG                                                 PKKLEP
Sbjct: 508 SSFWG------------------------------------------------TPKKLEP 567

Query: 361 HSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEENHMRDHKPRSKLVLNEATDEST 420
            SRLCQFVGYPKE RGGLFFDPQENRVFVSTN TFLEE+ MRDHKPRSKLVL EATDEST
Sbjct: 568 RSRLCQFVGYPKERRGGLFFDPQENRVFVSTNTTFLEEDRMRDHKPRSKLVLCEATDEST 627

Query: 421 RVIDEVGPSSRIDETTTSGQSHPSQSLRIPRRSGRIVSQPNRYLSLTETQVVIPDDVVED 480
           RV+DEV PSSR+DETTTSGQSHPSQSLR+PRRSGRIVSQP RYL LTETQVVIPDD VED
Sbjct: 628 RVVDEVDPSSRVDETTTSGQSHPSQSLRMPRRSGRIVSQPKRYLGLTETQVVIPDDGVED 649

Query: 481 PLSYKQAMNDVDKDQ 496
           PLSYKQ MNDVDK+Q
Sbjct: 688 PLSYKQTMNDVDKNQ 649

[Close]

BLAST of Cmc08g0227541 vs. NCBI nr
Match: KAA0065386.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 766.9 bits (1979), Expect = 1.0e-217
Identity = 394/495 (79.60%), Postives = 408/495 (82.42%), Query Frame = 0


Query: 1   MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
           MTLKVGTGDVISARAVGDAK                                        
Sbjct: 151 MTLKVGTGDVISARAVGDAK---------------------------------------- 210

Query: 61  NEAFISKNGVHICSAKLGNNLYVLRPNEAKAVLNHEMFRTANTQNKRQGISPNNNSYLRH 120
                                    PNEAKAVLNHEMFRTANTQNKRQ ISPNN +YL H
Sbjct: 211 -------------------------PNEAKAVLNHEMFRTANTQNKRQRISPNNGTYLWH 270

Query: 121 LRLGHINLDRIVRLVKNGLINKLEDDSLPPCESCLEGKMTKRPFAGKGYRAKEPLELIHS 180
           LRLGHINLD+I RLVKNGL+NKLEDDSLPPCES LEGKMTKRPF GKGYRAKEPLELIHS
Sbjct: 271 LRLGHINLDQIGRLVKNGLLNKLEDDSLPPCESFLEGKMTKRPFIGKGYRAKEPLELIHS 330

Query: 181 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKI 240
           DL GPMNVKAR GFEYFISFIDDYSRYGYLYLMEHKSEALEK KEY+ EVENLLS+KIKI
Sbjct: 331 DLYGPMNVKAREGFEYFISFIDDYSRYGYLYLMEHKSEALEKLKEYETEVENLLSEKIKI 390

Query: 241 LRSDRGEEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVTERRNRTLLDMVRSMMSYAQLP 300
           LRSDRG EYMDLRFQDYMIEHGIQSQLSA GTPQQNGV+ERRNRTLLDMVRSMMSYAQ P
Sbjct: 391 LRSDRGGEYMDLRFQDYMIEHGIQSQLSALGTPQQNGVSERRNRTLLDMVRSMMSYAQFP 450

Query: 301 SSFWGYAVETAVHILNNVPLKSVSETTFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEP 360
           SSFWGYAVETAVHILNNVP KSVSE  FELWRGRKPSLSHFRIWGCP H+LVTNPKKLEP
Sbjct: 451 SSFWGYAVETAVHILNNVPSKSVSEPPFELWRGRKPSLSHFRIWGCPVHMLVTNPKKLEP 510

Query: 361 HSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEENHMRDHKPRSKLVLNEATDEST 420
            SRLCQFVGYPK+TRGGLFFDPQENRVFVSTNATFLEE+HMRDHKPRSKLVLNEAT+EST
Sbjct: 511 RSRLCQFVGYPKDTRGGLFFDPQENRVFVSTNATFLEEDHMRDHKPRSKLVLNEATNEST 570

Query: 421 RVIDEVGPSSRIDETTTSGQSHPSQSLRIPRRSGRIVSQPNRYLSLTETQVVIPDDVVED 480
           RV+DEVGPSSR+DETTTSGQSHPSQ LR+PR SGRIVS+PNRYL LTETQVVIPDD VED
Sbjct: 571 RVVDEVGPSSRVDETTTSGQSHPSQLLRMPRHSGRIVSEPNRYLGLTETQVVIPDDGVED 580

Query: 481 PLSYKQAMNDVDKDQ 496
           PLSYKQAMNDVDKDQ
Sbjct: 631 PLSYKQAMNDVDKDQ 580

[Close]

BLAST of Cmc08g0227541 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 7.4e-57
Identity = 163/527 (30.93%), Postives = 262/527 (49.72%), Query Frame = 0


Query: 2   TLKVGTGDVISARAVGDAKLFFG-NKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 61
           T+K+G         +GD  +       + L+++  VP ++ NL+S   L    Y   F+ 
Sbjct: 321 TVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLISGIALDRDGYESYFAN 380

Query: 62  NEAFISKNGVHICSAKLGNNLYVLRPNEAKAVLNHEMFRT--ANTQNKRQGISPNNNSYL 121
            +  ++K  + I                AK V    ++RT     Q +        +  L
Sbjct: 381 QKWRLTKGSLVI----------------AKGVARGTLYRTNAEICQGELNAAQDEISVDL 440

Query: 122 RHLRLGHINLDRIVRLVKNGLINKLEDDSLPPCESCLEGKMTKRPFAGKGYRAKEPLELI 181
            H R+GH++   +  L K  LI+  +  ++ PC+ CL GK  +  F     R    L+L+
Sbjct: 441 WHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNILDLV 500

Query: 182 HSDLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKI 241
           +SD+CGPM +++ GG +YF++FIDD SR  ++Y+++ K +  + F+++ A VE    +K+
Sbjct: 501 YSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKL 560

Query: 242 KILRSDRGEEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVTERRNRTLLDMVRSMMSYAQ 301
           K LRSD G EY    F++Y   HGI+ + + PGTPQ NGV ER NRT+++ VRSM+  A+
Sbjct: 561 KRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAK 620

Query: 302 LPSSFWGYAVETAVHILNNVPLKSVS-ETTFELWRGRKPSLSHFRIWGCP--AHVLVTNP 361
           LP SFWG AV+TA +++N  P   ++ E    +W  ++ S SH +++GC   AHV     
Sbjct: 621 LPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCRAFAHVPKEQR 680

Query: 362 KKLEPHSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEENHMR-----DHKPRSKL 421
            KL+  S  C F+GY  E  G   +DP + +V  S +  F  E+ +R       K ++ +
Sbjct: 681 TKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVF-RESEVRTAADMSEKVKNGI 740

Query: 422 VLNEATDESTRVIDEVGPSSRIDETTTSGQ-------------------SHPSQ---SLR 481
           + N  T  ST   +     S  DE +  G+                    HP+Q     +
Sbjct: 741 IPNFVTIPSTS-NNPTSAESTTDEVSEQGEQPGEVIEQGEQLDEGVEEVEHPTQGEEQHQ 800

Query: 482 IPRRSGRIVSQPNRYLSLTETQVVIPDDVVEDPLSYKQAMNDVDKDQ 496
             RRS R   +  RY S TE  V+I DD   +P S K+ ++  +K+Q
Sbjct: 801 PLRRSERPRVESRRYPS-TE-YVLISDD--REPESLKEVLSHPEKNQ 825

[Close]

BLAST of Cmc08g0227541 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 191.8 bits (486), Expect = 1.8e-47
Identity = 126/403 (31.27%), Postives = 208/403 (51.61%), Query Frame = 0


Query: 30  LENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHIC-SAKLGNNLYVLRPNE 89
           LE++    +   NL+SV  L E   SI F  +   ISKNG+ +  ++ + NN+       
Sbjct: 345 LEDVLFCKEAAGNLMSVKRLQEAGMSIEFDKSGVTISKNGLMVVKNSGMLNNV------- 404

Query: 90  AKAVLNHEMFRTANTQNKRQGISPNNNSYLRHLRLGHINLDRIVRLVK------NGLINK 149
              V+N + + + N ++K       NN  L H R GHI+  +++ + +        L+N 
Sbjct: 405 --PVINFQAY-SINAKHK-------NNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNN 464

Query: 150 LEDDSLPPCESCLEGKMTKRPFAGKGYRA--KEPLELIHSDLCGPMNVKARGGFEYFISF 209
           LE  S   CE CL GK  + PF     +   K PL ++HSD+CGP+         YF+ F
Sbjct: 465 LE-LSCEICEPCLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIF 524

Query: 210 IDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKILRSDRGEEYMDLRFQDYMIE 269
           +D ++ Y   YL+++KS+    F+++ A+ E   + K+  L  D G EY+    + + ++
Sbjct: 525 VDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVK 584

Query: 270 HGIQSQLSAPGTPQQNGVTERRNRTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPL 329
            GI   L+ P TPQ NGV+ER  RT+ +  R+M+S A+L  SFWG AV TA +++N +P 
Sbjct: 585 KGISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPS 644

Query: 330 KSV---SETTFELWRGRKPSLSHFRIWGCPAHVLVTNPK-KLEPHSRLCQFVGYPKETRG 389
           +++   S+T +E+W  +KP L H R++G   +V + N + K +  S    FVGY  E  G
Sbjct: 645 RALVDSSKTPYEMWHNKKPYLKHLRVFGATVYVHIKNKQGKFDDKSFKSIFVGY--EPNG 704

Query: 390 GLFFDPQENRVFVSTNATFLEENHMRDHKPRSKLVLNEATDES 420
              +D    +  V+ +    E N +     + + V  + + ES
Sbjct: 705 FKLWDAVNEKFIVARDVVVDETNMVNSRAVKFETVFLKDSKES 727

[Close]

BLAST of Cmc08g0227541 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.8e-39
Identity = 113/400 (28.25%), Postives = 198/400 (49.50%), Query Frame = 0


Query: 5   VGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIE-HMYSINFSMNEA 64
           +  G  I     G A L   ++ + L  +  VP I +NL+SV  L   +  S+ F     
Sbjct: 341 IADGSTIPITHTGSASLPTSSRSLDLNKVLYVPNIHKNLISVYRLCNTNRVSVEFFPASF 400

Query: 65  FIS--KNGVHICSAKLGNNLYVLRPNEAKAVLNHEMFRTANTQNKRQGISPNNNSYLRHL 124
            +     GV +   K  + LY      ++AV    MF +  ++         ++S+  H 
Sbjct: 401 QVKDLNTGVPLLQGKTKDELYEWPIASSQAV---SMFASPCSK-------ATHSSW--HS 460

Query: 125 RLGHINLDRIVRLVKNGLINKLE-DDSLPPCESCLEGKMTKRPFAGKGYRAKEPLELIHS 184
           RLGH +L  +  ++ N  +  L     L  C  C   K  K PF+     + +PLE I+S
Sbjct: 461 RLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEYIYS 520

Query: 185 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKI 244
           D+     + +   + Y++ F+D ++RY +LY ++ KS+  + F  +K+ VEN    +I  
Sbjct: 521 DVWS-SPILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGT 580

Query: 245 LRSDRGEEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVTERRNRTLLDMVRSMMSYAQLP 304
           L SD G E++ LR  DY+ +HGI    S P TP+ NG++ER++R +++M  +++S+A +P
Sbjct: 581 LYSDNGGEFVVLR--DYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLSHASVP 640

Query: 305 SSFWGYAVETAVHILNNVPLKSVS-ETTFELWRGRKPSLSHFRIWGCPAHVLVT--NPKK 364
            ++W YA   AV+++N +P   +  ++ F+   G+ P+    +++GC  +  +   N  K
Sbjct: 641 KTYWPYAFSVAVYLINRLPTPLLQLQSPFQKLFGQPPNYEKLKVFGCACYPWLRPYNRHK 700

Query: 365 LEPHSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLE 398
           LE  S+ C F+GY       L       R++ S +  F E
Sbjct: 701 LEDKSKQCAFMGYSLTQSAYLCLHIPTGRLYTSRHVQFDE 725

[Close]

BLAST of Cmc08g0227541 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.9e-37
Identity = 120/465 (25.81%), Postives = 211/465 (45.38%), Query Frame = 0


Query: 5   VGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIE------HMYSINF 64
           V  G  I     G   L   ++ + L N+  VP I +NL+SV  L          +  +F
Sbjct: 362 VADGSTIPISHTGSTSLSTKSRPLNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASF 421

Query: 65  SMNEAFISKNGVHICSAKLGNNLYVLRPNEAKAVLNHEMFRTANTQNKRQGISPNNNSYL 124
            + +      GV +   K  + LY      ++ V    +F + +++         ++S+ 
Sbjct: 422 QVKDL---NTGVPLLQGKTKDELYEWPIASSQPV---SLFASPSSK-------ATHSSW- 481

Query: 125 RHLRLGHINLDRIVRLVKNGLINKLE-DDSLPPCESCLEGKMTKRPFAGKGYRAKEPLEL 184
            H RLGH     +  ++ N  ++ L        C  CL  K  K PF+     +  PLE 
Sbjct: 482 -HARLGHPAPSILNSVISNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPLEY 541

Query: 185 IHSDLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKK 244
           I+SD+     + +   + Y++ F+D ++RY +LY ++ KS+  E F  +K  +EN    +
Sbjct: 542 IYSDVWS-SPILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTR 601

Query: 245 IKILRSDRGEEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVTERRNRTLLDMVRSMMSYA 304
           I    SD G E++ L   +Y  +HGI    S P TP+ NG++ER++R +++   +++S+A
Sbjct: 602 IGTFYSDNGGEFVAL--WEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHA 661

Query: 305 QLPSSFWGYAVETAVHILNNVPLKSVS-ETTFELWRGRKPSLSHFRIWGCPAHVLVT--N 364
            +P ++W YA   AV+++N +P   +  E+ F+   G  P+    R++GC  +  +   N
Sbjct: 662 SIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKLFGTSPNYDKLRVFGCACYPWLRPYN 721

Query: 365 PKKLEPHSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEE-----------NHMRD 424
             KL+  SR C F+GY       L    Q +R+++S +  F E            + +++
Sbjct: 722 QHKLDDKSRQCVFLGYSLTQSAYLCLHLQTSRLYISRHVRFDENCFPFSNYLATLSPVQE 781

Query: 425 HKPRSKLVLNEATDESTRVIDEVGPSSRIDETTTSGQSHPSQSLR 449
            +  S  V +  T   TR      PS        +  S PS   R
Sbjct: 782 QRRESSCVWSPHTTLPTRTPVLPAPSCSDPHHAATPPSSPSAPFR 808

[Close]

BLAST of Cmc08g0227541 vs. ExPASy Swiss-Prot
Match: Q12491 (Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-B PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.2e-24
Identity = 121/505 (23.96%), Postives = 213/505 (42.18%), Query Frame = 0


Query: 11  ISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFISKNGV 70
           I   A+G+    F N           P I  +L+S+S L     +  F+ N    S   V
Sbjct: 490 IPINAIGNLHFNFQNGTKTSIKALHTPNIAYDLLSLSELANQNITACFTRNTLERSDGTV 549

Query: 71  HICSAKLGNNLYVLRPNEAKAVLNHEMFRTANTQNKRQGISPNNNSY-LRHLRLGHINLD 130
                K G+  ++   ++   + +H    T N  NK + +  N   Y L H  LGH N  
Sbjct: 550 LAPIVKHGDFYWL---SKKYLIPSHISKLTINNVNKSKSV--NKYPYPLIHRMLGHANFR 609

Query: 131 RIVRLVKNGLINKLEDDSLP-------PCESCLEGKMTKRPFAGKGYRAK-----EPLEL 190
            I + +K   +  L++  +         C  CL GK TK     KG R K     EP + 
Sbjct: 610 SIQKSLKKNAVTYLKESDIEWSNASTYQCPDCLIGKSTKHRHV-KGSRLKYQESYEPFQY 669

Query: 191 IHSDLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSE--ALEKFKEYKAEVENLLS 250
           +H+D+ GP++   +    YFISF D+ +R+ ++Y +  + E   L  F    A ++N  +
Sbjct: 670 LHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSILAFIKNQFN 729

Query: 251 KKIKILRSDRGEEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVTERRNRTLLDMVRSMMS 310
            ++ +++ DRG EY +     +    GI +  +     + +GV ER NRTLL+  R+++ 
Sbjct: 730 ARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLNRTLLNDCRTLLH 789

Query: 311 YAQLPSSFWGYAVETAVHILNNVPLKSVSETTFELWRGRKPSLSHFRIWGCPAHVLVTNP 370
            + LP+  W  AVE +  I N++      ++  +        ++    +G P  V   NP
Sbjct: 790 CSGLPNHLWFSAVEFSTIIRNSLVSPKNDKSARQHAGLAGLDITTILPFGQPVIVNNHNP 849

Query: 371 -KKLEPHSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEENHMR-DHKPRSKLV-- 430
             K+ P       +   + + G + + P   +   +TN   L++N  + D      L   
Sbjct: 850 DSKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQDNQSKLDQFNYDTLTFD 909

Query: 431 --LNEATDESTRVIDEVGPSSRIDETTTSGQSHPSQSLRIPRRSGRIVSQPNRYLSLTET 490
             LN  T  +   I++       D+ T S   + S+   I   S  +V+          +
Sbjct: 910 DDLNRLTAHNQSFIEQNETEQSYDQNTESDHDYQSE---IEINSDPLVND-------FSS 969

Query: 491 QVVIPDDVVEDPLSYKQAMNDVDKD 495
           Q + P  +  +P+   +A+ +VD D
Sbjct: 970 QSMNPLQLDHEPVQKVRALKEVDAD 978

[Close]

BLAST of Cmc08g0227541 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 949.9 bits (2454), Expect = 4.2e-273
Identity = 470/495 (94.95%), Postives = 481/495 (97.17%), Query Frame = 0


Query: 1   MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
           MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM
Sbjct: 233 MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 292

Query: 61  NEAFISKNGVHICSAKLGNNLYVLRPNEAKAVLNHEMFRTANTQNKRQGISPNNNSYLRH 120
           NEAFI KNGVHICSAKL NNLYVLRPNEAKAVLNHEMFRTANTQNKRQ ISPNNN+YL H
Sbjct: 293 NEAFIYKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH 352

Query: 121 LRLGHINLDRIVRLVKNGLINKLEDDSLPPCESCLEGKMTKRPFAGKGYRAKEPLELIHS 180
           LRLGHINLDRI RLVKNGL+NKL+D SLPPCESCLEGKMTKRPF GKGYRAKEPLELIHS
Sbjct: 353 LRLGHINLDRIGRLVKNGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 412

Query: 181 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKI 240
           DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYK EVENLLSKKIKI
Sbjct: 413 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI 472

Query: 241 LRSDRGEEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVTERRNRTLLDMVRSMMSYAQLP 300
           LRSDRG EYMDLRFQDYMIEHGIQSQLSAPGTPQQNGV+ERRNRTLLDMVRSMMSYAQLP
Sbjct: 473 LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLP 532

Query: 301 SSFWGYAVETAVHILNNVPLKSVSETTFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEP 360
           SSFWGYAVETAVHILNNVP KSVSET FELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEP
Sbjct: 533 SSFWGYAVETAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEP 592

Query: 361 HSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEENHMRDHKPRSKLVLNEATDEST 420
            SRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEE+HMR+HKPRSKLVL+EATDEST
Sbjct: 593 RSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDEST 652

Query: 421 RVIDEVGPSSRIDETTTSGQSHPSQSLRIPRRSGRIVSQPNRYLSLTETQVVIPDDVVED 480
           RV+DEVGPSSR+DETTTSGQSHPSQSLR+PRRSGR+VSQPNRYL LTETQVVIPDD VED
Sbjct: 653 RVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVED 712

Query: 481 PLSYKQAMNDVDKDQ 496
           PLSYKQAMNDVDKDQ
Sbjct: 713 PLSYKQAMNDVDKDQ 727

[Close]

BLAST of Cmc08g0227541 vs. ExPASy TrEMBL
Match: A0A5A7T2V9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760 PE=4 SV=1)

HSP 1 Score: 939.5 bits (2427), Expect = 5.7e-270
Identity = 465/495 (93.94%), Postives = 478/495 (96.57%), Query Frame = 0


Query: 1   MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
           MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM
Sbjct: 233 MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 292

Query: 61  NEAFISKNGVHICSAKLGNNLYVLRPNEAKAVLNHEMFRTANTQNKRQGISPNNNSYLRH 120
           NEAFI KNGVHICSAKL NNLYVLRPNEAKAVLNHEMFRTANTQNKRQ ISPNNN+YL H
Sbjct: 293 NEAFIYKNGVHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH 352

Query: 121 LRLGHINLDRIVRLVKNGLINKLEDDSLPPCESCLEGKMTKRPFAGKGYRAKEPLELIHS 180
           LRLGHINLDRI RLVK+GL+NKL+D SLPPCESCLEGKMTKRPF GKGYRAKEPLELIHS
Sbjct: 353 LRLGHINLDRIGRLVKDGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 412

Query: 181 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKI 240
           DLCGPMNVKARG FEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYK EVENLLSKKIKI
Sbjct: 413 DLCGPMNVKARGSFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKI 472

Query: 241 LRSDRGEEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVTERRNRTLLDMVRSMMSYAQLP 300
            RSDRG EYMDL FQDYMIEHGIQSQLSAPGTPQQNGV+ERRNRTLLDMVRSMMSYAQLP
Sbjct: 473 FRSDRGGEYMDLIFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLP 532

Query: 301 SSFWGYAVETAVHILNNVPLKSVSETTFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEP 360
           SSFWGYAVETAVHILNNVP KSVSET FELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEP
Sbjct: 533 SSFWGYAVETAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEP 592

Query: 361 HSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEENHMRDHKPRSKLVLNEATDEST 420
            SRLCQFVGYPKETRGGLFFDP+ENRVFVSTNATFLEE+HMR+HKPRSKLVL+EATDEST
Sbjct: 593 RSRLCQFVGYPKETRGGLFFDPKENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDEST 652

Query: 421 RVIDEVGPSSRIDETTTSGQSHPSQSLRIPRRSGRIVSQPNRYLSLTETQVVIPDDVVED 480
           RV+DEVGPSSR+DETTTSGQSHPSQSLR+PRRSGR+VSQPNRYL LTETQVVIPDD VED
Sbjct: 653 RVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVSQPNRYLGLTETQVVIPDDGVED 712

Query: 481 PLSYKQAMNDVDKDQ 496
           PLSYKQAMNDVDKDQ
Sbjct: 713 PLSYKQAMNDVDKDQ 727

[Close]

BLAST of Cmc08g0227541 vs. ExPASy TrEMBL
Match: A0A5D3BNE1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00410 PE=4 SV=1)

HSP 1 Score: 887.9 bits (2293), Expect = 2.0e-254
Identity = 440/485 (90.72%), Postives = 454/485 (93.61%), Query Frame = 0


Query: 1   MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
           M LKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSI+FSM
Sbjct: 205 MILKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSISFSM 264

Query: 61  NEAFISKNGVHICSAKLGNNLYVLRPNEAKAVLNHEMFRTANTQNKRQGISPNNNSYLRH 120
           NEAFISKNGVHICS KL +NLYVL+PNE KAVLNHEMFRTANTQNKRQ IS NNN+YL H
Sbjct: 265 NEAFISKNGVHICSVKLEDNLYVLKPNEGKAVLNHEMFRTANTQNKRQRISSNNNTYLWH 324

Query: 121 LRLGHINLDRIVRLVKNGLINKLEDDSLPPCESCLEGKMTKRPFAGKGYRAKEPLELIHS 180
           LRLGHINLDRI RLVKNGL+NKLEDDSLPPCESCLEGKMTKRPF GKGYRAKEPLELIHS
Sbjct: 325 LRLGHINLDRIGRLVKNGLLNKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHS 384

Query: 181 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKI 240
           DLCGPMNVKA GGFEYFISFIDDYS YGYLYL+EHKSEALEKFKEYK EVENLLSKKIKI
Sbjct: 385 DLCGPMNVKAIGGFEYFISFIDDYSMYGYLYLIEHKSEALEKFKEYKTEVENLLSKKIKI 444

Query: 241 LRSDRGEEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVTERRNRTLLDMVRSMMSYAQLP 300
           LRSDRG EYMDLRFQDYMIEHGIQSQLSAPGTPQQNGV+ERRNRTLLDMV SMMSY QLP
Sbjct: 445 LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVHSMMSYVQLP 504

Query: 301 SSFWGYAVETAVHILNNVPLKSVSETTFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEP 360
           SSFWGYAVETAVHILNNVP K+V ET FELWRGRKPSLSHFRIW CP HVLVTNPKKLEP
Sbjct: 505 SSFWGYAVETAVHILNNVPSKNVFETPFELWRGRKPSLSHFRIWVCPVHVLVTNPKKLEP 564

Query: 361 HSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEENHMRDHKPRSKLVLNEATDEST 420
            SRLCQFVGYPKETRGGLFFDPQENRVFVSTNATF EE+HMRDHKPR KLVL+EATDEST
Sbjct: 565 RSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFFEEDHMRDHKPRRKLVLSEATDEST 624

Query: 421 RVIDEVGPSSRIDETTTSGQSHPSQSLRIPRRSGRIVSQPNRYLSLTETQVVIPDDVVED 480
           RV+DEVGPSSR+DETTTSGQSHPSQSLR+PRRSGR +SQ  RYL LTET VVIPD  VED
Sbjct: 625 RVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRGLSQSKRYLGLTETHVVIPDVGVED 684

Query: 481 PLSYK 486
           PL YK
Sbjct: 685 PLFYK 689

[Close]

BLAST of Cmc08g0227541 vs. ExPASy TrEMBL
Match: A0A5A7VJG3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001110 PE=4 SV=1)

HSP 1 Score: 781.6 bits (2017), Expect = 2.0e-222
Identity = 407/495 (82.22%), Postives = 417/495 (84.24%), Query Frame = 0


Query: 1   MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
           MTL VGTGDVISARAVGD KLFFG KFMFLENLYIVPKIKRNLV VSCLIEHMYSINFSM
Sbjct: 208 MTLMVGTGDVISARAVGDVKLFFGIKFMFLENLYIVPKIKRNLVFVSCLIEHMYSINFSM 267

Query: 61  NEAFISKNGVHICSAKLGNNLYVLRPNEAKAVLNHEMFRTANTQNKRQGISPNNNSYLRH 120
           NEAFISKNG     AKL +NLYVLRPNEAKAVLNHEMFRTANTQNKRQ ISPNNN+YL H
Sbjct: 268 NEAFISKNG-----AKLEDNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWH 327

Query: 121 LRLGHINLDRIVRLVKNGLINKLEDDSLPPCESCLEGKMTKRPFAGKGYRAKEPLELIHS 180
           LRL HINLDRI RLVKNGL+NKL+DDSLPPCESCLEGKMTKRPF GK YRAKEPLELIHS
Sbjct: 328 LRLDHINLDRIGRLVKNGLLNKLKDDSLPPCESCLEGKMTKRPFTGKDYRAKEPLELIHS 387

Query: 181 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKI 240
           DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHK EALEKFKEYK EVENLLSKKIKI
Sbjct: 388 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKYEALEKFKEYKTEVENLLSKKIKI 447

Query: 241 LRSDRGEEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVTERRNRTLLDMVRSMMSYAQLP 300
           LRSDRG EYMDLRFQDYMIEHGIQSQLSAPGTPQQNGV+ERRNRTLLDMVRSMMSYAQLP
Sbjct: 448 LRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLP 507

Query: 301 SSFWGYAVETAVHILNNVPLKSVSETTFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEP 360
           SSFWG                                                 PKKLEP
Sbjct: 508 SSFWG------------------------------------------------TPKKLEP 567

Query: 361 HSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEENHMRDHKPRSKLVLNEATDEST 420
            SRLCQFVGYPKE RGGLFFDPQENRVFVSTN TFLEE+ MRDHKPRSKLVL EATDEST
Sbjct: 568 RSRLCQFVGYPKERRGGLFFDPQENRVFVSTNTTFLEEDRMRDHKPRSKLVLCEATDEST 627

Query: 421 RVIDEVGPSSRIDETTTSGQSHPSQSLRIPRRSGRIVSQPNRYLSLTETQVVIPDDVVED 480
           RV+DEV PSSR+DETTTSGQSHPSQSLR+PRRSGRIVSQP RYL LTETQVVIPDD VED
Sbjct: 628 RVVDEVDPSSRVDETTTSGQSHPSQSLRMPRRSGRIVSQPKRYLGLTETQVVIPDDGVED 649

Query: 481 PLSYKQAMNDVDKDQ 496
           PLSYKQ MNDVDK+Q
Sbjct: 688 PLSYKQTMNDVDKNQ 649

[Close]

BLAST of Cmc08g0227541 vs. ExPASy TrEMBL
Match: A0A5A7VGC7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G00530 PE=4 SV=1)

HSP 1 Score: 766.9 bits (1979), Expect = 5.1e-218
Identity = 394/495 (79.60%), Postives = 408/495 (82.42%), Query Frame = 0


Query: 1   MTLKVGTGDVISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSM 60
           MTLKVGTGDVISARAVGDAK                                        
Sbjct: 151 MTLKVGTGDVISARAVGDAK---------------------------------------- 210

Query: 61  NEAFISKNGVHICSAKLGNNLYVLRPNEAKAVLNHEMFRTANTQNKRQGISPNNNSYLRH 120
                                    PNEAKAVLNHEMFRTANTQNKRQ ISPNN +YL H
Sbjct: 211 -------------------------PNEAKAVLNHEMFRTANTQNKRQRISPNNGTYLWH 270

Query: 121 LRLGHINLDRIVRLVKNGLINKLEDDSLPPCESCLEGKMTKRPFAGKGYRAKEPLELIHS 180
           LRLGHINLD+I RLVKNGL+NKLEDDSLPPCES LEGKMTKRPF GKGYRAKEPLELIHS
Sbjct: 271 LRLGHINLDQIGRLVKNGLLNKLEDDSLPPCESFLEGKMTKRPFIGKGYRAKEPLELIHS 330

Query: 181 DLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKI 240
           DL GPMNVKAR GFEYFISFIDDYSRYGYLYLMEHKSEALEK KEY+ EVENLLS+KIKI
Sbjct: 331 DLYGPMNVKAREGFEYFISFIDDYSRYGYLYLMEHKSEALEKLKEYETEVENLLSEKIKI 390

Query: 241 LRSDRGEEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGVTERRNRTLLDMVRSMMSYAQLP 300
           LRSDRG EYMDLRFQDYMIEHGIQSQLSA GTPQQNGV+ERRNRTLLDMVRSMMSYAQ P
Sbjct: 391 LRSDRGGEYMDLRFQDYMIEHGIQSQLSALGTPQQNGVSERRNRTLLDMVRSMMSYAQFP 450

Query: 301 SSFWGYAVETAVHILNNVPLKSVSETTFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEP 360
           SSFWGYAVETAVHILNNVP KSVSE  FELWRGRKPSLSHFRIWGCP H+LVTNPKKLEP
Sbjct: 451 SSFWGYAVETAVHILNNVPSKSVSEPPFELWRGRKPSLSHFRIWGCPVHMLVTNPKKLEP 510

Query: 361 HSRLCQFVGYPKETRGGLFFDPQENRVFVSTNATFLEENHMRDHKPRSKLVLNEATDEST 420
            SRLCQFVGYPK+TRGGLFFDPQENRVFVSTNATFLEE+HMRDHKPRSKLVLNEAT+EST
Sbjct: 511 RSRLCQFVGYPKDTRGGLFFDPQENRVFVSTNATFLEEDHMRDHKPRSKLVLNEATNEST 570

Query: 421 RVIDEVGPSSRIDETTTSGQSHPSQSLRIPRRSGRIVSQPNRYLSLTETQVVIPDDVVED 480
           RV+DEVGPSSR+DETTTSGQSHPSQ LR+PR SGRIVS+PNRYL LTETQVVIPDD VED
Sbjct: 571 RVVDEVGPSSRVDETTTSGQSHPSQLLRMPRHSGRIVSEPNRYLGLTETQVVIPDDGVED 580

Query: 481 PLSYKQAMNDVDKDQ 496
           PLSYKQAMNDVDKDQ
Sbjct: 631 PLSYKQAMNDVDKDQ 580

[Close]

BLAST of Cmc08g0227541 vs. TAIR 10
Match: ATMG00710.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 57.0 bits (136), Expect = 5.0e-08
Identity = 29/82 (35.37%), Postives = 48/82 (58.54%), Query Frame = 0


Query: 283 NRTLLDMVRSMMSYAQLPSSFWGYAVETAVHILNNVPLKSVS-ETTFELWRGRKPSLSHF 342
           NRT+++ VRSM+    LP +F   A  TAVHI+N  P  +++     E+W    P+ S+ 
Sbjct: 2   NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61

Query: 343 RIWGCPAHVLVTNPKKLEPHSR 364
           R +GC A++   +  KL+P ++
Sbjct: 62  RRFGCVAYI-HCDEGKLKPRAK 82

[Close]

BLAST of Cmc08g0227541 vs. TAIR 10
Match: ATMG00300.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 51.6 bits (122), Expect = 2.1e-06
Identity = 26/71 (36.62%), Postives = 39/71 (54.93%), Query Frame = 0


Query: 118 LRHLRLGHINLDRIVRLVKNGLINKLEDDSLPPCESCLEGKMTKRPFAGKGYRAKEPLEL 177
           L H RL H++   +  LVK G ++  +  SL  CE C+ GK  +  F+   +  K PL+ 
Sbjct: 71  LWHSRLAHMSQRGMELLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTKNPLDY 130

Query: 178 IHSDLCGPMNV 189
           +HSDL G  +V
Sbjct: 131 VHSDLWGAPSV 141

The following BLAST results are available for this feature:

BLAST of Cmc08g0227541 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025945.1	8.7e-273	94.95	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]
KAA0035907.1	1.2e-269	93.94	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0060534.1	4.1e-254	90.72	gag/pol protein [Cucumis melo var. makuwa] >TYK00774.1 gag/pol protein [Cucumis ...	[more]
KAA0067938.1	4.1e-222	82.22	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0065386.1	1.0e-217	79.60	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc08g0227541 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	7.4e-57	30.93	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.8e-47	31.27	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	1.8e-39	28.25	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	2.9e-37	25.81	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q12491	2.2e-24	23.96	Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc08g0227541 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TZD0	4.2e-273	94.95	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5A7T2V9	5.7e-270	93.94	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760...	[more]
A0A5D3BNE1	2.0e-254	90.72	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G0041...	[more]
A0A5A7VJG3	2.0e-222	82.22	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G0011...	[more]
A0A5A7VGC7	5.1e-218	79.60	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G00530...	[more]

BLAST of Cmc08g0227541 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00710.1	5.0e-08	35.37	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
ATMG00300.1	2.1e-06	36.62	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 216..236
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 416..454
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 430..454
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 120..452
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 172..273 e-value: 1.2E-12 score: 48.1
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 170..335 score: 23.540461
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 167..343 e-value: 1.3E-40 score: 140.8
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 108..159 e-value: 5.8E-10 score: 38.9
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 169..329

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0227541.1	Cmc08g0227541.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding