Cmc08g0227511 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0227511
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-containing protein
Location	CMiso1.1chr08: 20643362 .. 20646826 (+)
RNA-Seq Expression	Cmc08g0227511
Synteny	Cmc08g0227511

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCAACCATGACAAAAGCTTAGTATAATCTGCACATCTCTGAATTTTAATTCGGTTTCAGCAACATAAGAGCAATTAAAAGGTGAGGTTTTTTTTTTTTTTTTTTTTTTACTTTTGAATGTTTACTCATTTTATAACAATTTTTTTCAAGAAGCTTGAGCAAATTCTGATGTTAAGTTAATGAATTTCGAGGAGGAAAACAAGTCTTTATGTGAATTCATGAAGTCTCTGGTCTTTTTAGTATCCCATAGTGTACAAATTGAATTAGAAGCTCTATTGGGTATAGTTGGAAAGCTTATTAAATTTCCTGTAACTTTTATGAAGAACTCATAAGCAAAAAGTGAGAGAAAGTAGGTTTAATTTCATAAGTAAATCAAAGATTAGCAGAAGACACGAATTTGAAATAACTGTGTTTCAGGAGATTTCTGTAACAATTGATTGGGAATCTCGTTTGTATTCCTTCAAGTAAGTTGTAGAAGGTTCTAAAATAAAGAATTTGATATAAAGTACATTAATTTTAGTCAAATATTGATGAAGTTATGGGTGTTTGAAGTTAGGTTGTTGAATCTAAAAAATTCTGGGAAAAGTATAAAATGTTCTTTTATTTTTAAAGTTTAAAATTGATGAGTCTTATCTTTTGTGCACATCTTAAGTTTAATATAGAAAAACAAGACTATTTAAGATTTTGATGCTCAGTTTTGGTTTATATTGAAAGAATGAAAGACCTTACACAGTGAAGAAACTAGAAAAGACCATCAACTCACTTTAATTGAAAAGTTAAAAATACCAAATACATTGACAAATAATAGAAACAAATTTCCTATAGGCTAAGCAGGCTTCTAAAAAAAATGATACAGAGAAGAAAGAAATAAGGCACTTACGTCGTTGATGACTTTGTATCTACTAAAACTCCAAATTGAGGCACCACCACCACTTGAAACATTTATATTCTCTGAGTTAGAGATTGGTTTGTGGGAACCAATTGGAAGGGAATTTTTTTTTTAAATAGAAAATTTCTTTTTGAAAGAATTACAGTATCTCGAGATCTTCCAGAACTGTTATGAGATGTTACCCTGCTATCTCCCTCTTCTTTAAACGAAAGAGGAAGAAAGTAGAGAGAGAAAAAATAGGAACGTGGGAAATCCAGCCACGTTCCCTATTAATTTAATAACTTATATTAAATTAATATAAATATTAAAAACATTAAATAATTAATTAAATCATATTTAATTAATATTTCATTTAAATCATATTAAAATAAATATCTCTCACATAACATATAATTTTAATTTATTTAAATCAAATTAAACTAAATTATTAATTAATTCTCTAATTAATTAATTGCTAAATTAAATATCTTATATATACTTTAATCCAAATTTAAATCATATTCAAATATAAATTTCTCTTATAACCTATAGCTTTAATGTGTATCATATACATATTAAACTTTAACTTATAGTTTTAATATGAATTTAATTCACATTTATTTAATATTTGAACTCATTCACATATTTTATCTCTCATAAATTTATTTTAAATCATATCAAAAATTAAACTTATATAATATAGATTAATTAAAATATAAAATTTATATTATAATGTATCACCATACATTATATTAATTCCCAAAGTAAATTTGCTACGATTCTTCCCATCGCCCTAGGCTTTCCCCGCTTCGTGGGCATGTACCGGAAAAATCATTGATACAGTATATTAATTCTGAACGTAAATTTGAATATTTCAAATTACAACCAATATAAATAAATCTCATTACCCTTTACAAACTAGGAACGTGACCTAATGGACCTACAGATCAAAAGTCTATAACGATATGAGATTAATTGGCTAAACTCATTAACCACAATAATCAATATTCGTTAACTGTGTGTATCCACTAAAGAGTCACAACTGAACTCTTCTCACTGTAGATATATTTCTATGTCCATGGATATAAACCAATACCAGTAAGTTAGTCTTTCATAAGTGTTCGTAACACCAGTTGGGTCGAATTGTCGCTTTACCTTTGGGTTACTTCTGGCCCTTAAATACCAGTGCTCCTTTAATGAACAACCTGTTTATGGTCCAACCACTAAACAGAAACCCCTCTAGTGCCATAGAGAGGGTAGGACCCTTTGTTCAAGTCCCGGAGACACCATTTAAGGGAACACTTATCTACTTAAAGTCAGAAAGGAGTGAATTCCATCTTGTGTGATTATGTTCCCAACTCCCCACACGGTCTTGTCTCTAAAACGATAAGCATATTGAGTCGGAATCTAGCCACTCTCACCCATACAAATCAAAGGAAAATCCCTTGCGAACAAGAGTTCATAATACACTCAGGATTAAGATTAAGTTACCTAAGTCATTCTAATGAAATTGAAACCCAACTAGTTAACGAATATACATCTAGCTAGTGGTTAGTATTTTGTGGTCCGATCTTATGCAAACTAATTGGATAGGATACTCTTACTCGCATGTCAACTACATGAATGTGTTGGATTATTGAGTTTGTATCAAATACAAAGTGAGTCGTATCTATAGTGTTACTAGGATAAGGTACCCAACATTGTCCTTATACTATAGACCCTTTAAGTTGTATCTCGAACATTGATCCATATGTCTCTACATACTATTCATAACTCATCAACAACTTAGAATGTTAGTTTATTGGATTTAGATTATTAAGATAAAACTAATAATATAATCAATAACACTAATTGAAATTATGACAATACACTTTATTAATAACGGTCAATGGATTATTATATTTATTATCTACGAGTTTTAGGACATAAAACCCAACATGTGTGATAGGCCAAGAGGAAATAGGTCGAGTTTACAAACTAGGAAACTAACCCAAGGCTGTGAGTGACAGAACATATTACAAAAGTGATTTCTAAACTGTTATTTATGATTAAATGTTTTATATGCTTGATTATGAGTTTATGAATAATACATGATTTGTATGAATCATTTCGAGCATAGATTTTCCAATAAAATTTATATGTGAGCACGTGATTATTGACTTTGTGAAAATTAGTTGAAACGATATCATTTTAAGCAAAGTATGTATTAGCAAGTATTGTTTATAGATTGTTAGTTTTCCATGAACAAGTTGAGTAAGCTTGAGTTTTACGAAAGATAAAGATAAGCAGACATGTTTTAATGTTTTCATATGGCTTTCTGAAATTTCTATTAACTACATGGTGAGATATTAAGCCCGAGGTTATATGGTACCATGTGCACACAGGTTAGATTCTATTGTTGACATTGAGTGTACTCCGTGACAACGATGTGGTTGCGAGTGTTGGGCTGGCCCCACTACGAGAAAGATGATGGAAGTGCTGGGCGAGTCCCACTACATCATACATCTAATAAACGTTGGTTGTATTGGGCATGTCCAACACAACATAGATTTGTCATGTTAGTTAAAATGTTTAATATACTTGATATTTTTTGCTAG

mRNA sequence

GGCAACCATGACAAAAGCTTAGTATAATCTGCACATCTCTGAATTTTAATTCGGTTTCAGCAACATAAGAGCAATTAAAAGGTTAGATTCTATTGTTGACATTGAGTGTACTCCGTGACAACGATGTGGTTGCGAGTGTTGGGCTGGCCCCACTACGAGAAAGATGATGGAAGTGCTGGGCGAGTCCCACTACATCATACATCTAATAAACGTTGGTTGTATTGGGCATGTCCAACACAACATAGATTTGTCATGTTAGTTAAAATGTTTAATATACTTGATATTTTTTGCTAG

Coding sequence (CDS)

ATGTGGTTGCGAGTGTTGGGCTGGCCCCACTACGAGAAAGATGATGGAAGTGCTGGGCGAGTCCCACTACATCATACATCTAATAAACGTTGGTTGTATTGGGCATGTCCAACACAACATAGATTTGTCATGTTAGTTAAAATGTTTAATATACTTGATATTTTTTGCTAG

Protein sequence

MWLRVLGWPHYEKDDGSAGRVPLHHTSNKRWLYWACPTQHRFVMLVKMFNILDIFC

Homology

[Close]

BLAST of Cmc08g0227511 vs. NCBI nr
Match: KAA0065516.1 (uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 9.7e-11
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 0


Query: 7   GWPHYEKDDGSAGRVPLHHTSNKRWLYWACPTQHRFVMLVKMFNIL 53
           G PHY+KDDG+A R PLH  ++KRWLYWACPT  R VMLVK F++L
Sbjct: 556 GGPHYDKDDGNAVRAPLHRRTSKRWLYWACPTPRRSVMLVKTFDVL 601

[Close]

BLAST of Cmc08g0227511 vs. NCBI nr
Match: TYJ98800.1 (uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 9.7e-11
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 0


Query: 7   GWPHYEKDDGSAGRVPLHHTSNKRWLYWACPTQHRFVMLVKMFNIL 53
           G PHY+KDDG+A R PLH  ++KRWLYWACPT  R VMLVK F++L
Sbjct: 142 GGPHYDKDDGNAVRAPLHRRTSKRWLYWACPTPRRSVMLVKTFDVL 187

[Close]

BLAST of Cmc08g0227511 vs. NCBI nr
Match: KAA0041324.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 1.3e-07
Identity = 27/35 (77.14%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 13  KDDGSAGRVPLHHTSNKRWLYWACPTQHRFVMLVK 48
           KDDGSAGR PLH  ++KRWLYWACPTQ   VMLVK
Sbjct: 796 KDDGSAGRTPLHRRTSKRWLYWACPTQRNEVMLVK 830

[Close]

BLAST of Cmc08g0227511 vs. NCBI nr
Match: TYK02787.1 (RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 1.1e-06
Identity = 26/35 (74.29%), Postives = 28/35 (80.00%), Query Frame = 0


Query: 13  KDDGSAGRVPLHHTSNKRWLYWACPTQHRFVMLVK 48
           KDDGSAGR PLH  ++KRWLYWAC TQ   VMLVK
Sbjct: 780 KDDGSAGRTPLHRRTSKRWLYWACSTQRNEVMLVK 814

[Close]

BLAST of Cmc08g0227511 vs. ExPASy TrEMBL
Match: A0A5A7VGQ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold638G00090 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.7e-11
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 0


Query: 7   GWPHYEKDDGSAGRVPLHHTSNKRWLYWACPTQHRFVMLVKMFNIL 53
           G PHY+KDDG+A R PLH  ++KRWLYWACPT  R VMLVK F++L
Sbjct: 556 GGPHYDKDDGNAVRAPLHRRTSKRWLYWACPTPRRSVMLVKTFDVL 601

[Close]

BLAST of Cmc08g0227511 vs. ExPASy TrEMBL
Match: A0A5D3BG85 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1625G00140 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.7e-11
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 0


Query: 7   GWPHYEKDDGSAGRVPLHHTSNKRWLYWACPTQHRFVMLVKMFNIL 53
           G PHY+KDDG+A R PLH  ++KRWLYWACPT  R VMLVK F++L
Sbjct: 142 GGPHYDKDDGNAVRAPLHRRTSKRWLYWACPTPRRSVMLVKTFDVL 187

[Close]

BLAST of Cmc08g0227511 vs. ExPASy TrEMBL
Match: A0A5A7TCY8 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G003250 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.3e-08
Identity = 27/35 (77.14%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 13  KDDGSAGRVPLHHTSNKRWLYWACPTQHRFVMLVK 48
           KDDGSAGR PLH  ++KRWLYWACPTQ   VMLVK
Sbjct: 796 KDDGSAGRTPLHRRTSKRWLYWACPTQRNEVMLVK 830

[Close]

BLAST of Cmc08g0227511 vs. ExPASy TrEMBL
Match: A0A5D3BTJ5 (RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold145G00460 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.3e-07
Identity = 26/35 (74.29%), Postives = 28/35 (80.00%), Query Frame = 0


Query: 13  KDDGSAGRVPLHHTSNKRWLYWACPTQHRFVMLVK 48
           KDDGSAGR PLH  ++KRWLYWAC TQ   VMLVK
Sbjct: 780 KDDGSAGRTPLHRRTSKRWLYWACSTQRNEVMLVK 814

The following BLAST results are available for this feature:

BLAST of Cmc08g0227511 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065516.1	9.7e-11	67.39	uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]	[more]
TYJ98800.1	9.7e-11	67.39	uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]	[more]
KAA0041324.1	1.3e-07	77.14	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
TYK02787.1	1.1e-06	74.29	RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-c...	[more]

BLAST of Cmc08g0227511 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc08g0227511 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VGQ5	4.7e-11	67.39	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BG85	4.7e-11	67.39	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TCY8	6.3e-08	77.14	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3BTJ5	5.3e-07	74.29	RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-c...	[more]

BLAST of Cmc08g0227511 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0227511.1	Cmc08g0227511.1	mRNA